assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003031975.1_ASM303197v1	CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	1	531896-532119	1,1	PILER-CR,CRISPRCasFinder	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAATTT,TTTTAGTTACTTATTGTGAAATGTAAAT	31,28	0	0	NA	NA	I-A:I-A	3,3	3	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA|133aa|up_5|CP025560.1_526887_527286_+,NA|193aa|down_0|CP025560.1_532508_533087_+	NA|217aa|up_9|CP025560.1_522950_523601_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|CP025560.1_523709_525770_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|CP025560.1_525773_526376_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|CP025560.1_526403_526871_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|CP025560.1_526887_527286_+	NA	NA|217aa|up_4|CP025560.1_527296_527947_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|CP025560.1_527943_528990_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|CP025560.1_529005_529299_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|CP025560.1_529313_530585_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|CP025560.1_530724_531660_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|CP025560.1_532508_533087_+	NA	NA|227aa|down_1|CP025560.1_533194_533875_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|CP025560.1_533899_534259_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|CP025560.1_534265_534724_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|CP025560.1_535105_536941_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|CP025560.1_537041_537473_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|CP025560.1_537519_538950_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|CP025560.1_539070_539886_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|CP025560.1_540238_540961_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|CP025560.1_540976_542665_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCA_003031975.1_ASM303197v1	CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	2	548544-551810	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	1	1	548897-548933	CP025560.1_2088424-2088460	I-A:I-A:I-A	49,50,50	50	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA,NA|148aa|down_5|CP025560.1_557357_557801_+,NA|492aa|down_9|CP025560.1_562109_563585_+	NA|477aa|up_9|CP025560.1_537519_538950_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|CP025560.1_539070_539886_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|CP025560.1_540238_540961_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|CP025560.1_540976_542665_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|CP025560.1_542654_543524_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|CP025560.1_543501_544284_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|CP025560.1_544351_546559_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|CP025560.1_546572_547061_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|330aa|up_1|CP025560.1_547073_548063_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|CP025560.1_548067_548346_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|CP025560.1_551881_552250_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|CP025560.1_552397_553813_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|CP025560.1_553944_554949_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|CP025560.1_554980_556297_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|CP025560.1_556499_557252_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|CP025560.1_557357_557801_+	NA	NA|554aa|down_6|CP025560.1_557846_559508_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|CP025560.1_559763_561095_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|CP025560.1_561139_561880_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|CP025560.1_562109_563585_+	NA
GCA_003031975.1_ASM303197v1	CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3	2582968-2583129	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA|140aa|up_7|CP025560.1_2568256_2568676_-,NA|58aa|down_3|CP025560.1_2585314_2585488_-	WYL|299aa|up_9|CP025560.1_2566570_2567467_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|CP025560.1_2567511_2568081_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|CP025560.1_2568256_2568676_-	NA	NA|1311aa|up_6|CP025560.1_2569625_2573558_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|CP025560.1_2573572_2574517_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|CP025560.1_2574576_2577852_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|CP025560.1_2578234_2579143_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|CP025560.1_2579198_2579663_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|CP025560.1_2579678_2582060_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|CP025560.1_2582093_2582840_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|CP025560.1_2583203_2583437_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|CP025560.1_2583536_2584280_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|CP025560.1_2584462_2585182_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|CP025560.1_2585314_2585488_-	NA	NA|431aa|down_4|CP025560.1_2585589_2586882_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|CP025560.1_2587017_2588550_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|CP025560.1_2588551_2589307_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|CP025560.1_2589352_2590543_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|CP025560.1_2590677_2591688_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|CP025560.1_2591719_2592766_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCA_003031975.1_ASM303197v1	CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	4	2842956-2843066	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA,NA|74aa|down_2|CP025560.1_2843835_2844057_-,NA|52aa|down_4|CP025560.1_2845997_2846153_+,NA|214aa|down_5|CP025560.1_2846724_2847366_-	NA|330aa|up_9|CP025560.1_2834881_2835871_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|CP025560.1_2835892_2836489_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|CP025560.1_2836492_2836867_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|CP025560.1_2836972_2837824_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|CP025560.1_2837942_2838782_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|CP025560.1_2838902_2839745_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|CP025560.1_2839790_2840036_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|CP025560.1_2840050_2840647_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|CP025560.1_2840755_2841073_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|CP025560.1_2841102_2842842_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|CP025560.1_2843168_2843633_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|CP025560.1_2843650_2843833_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|CP025560.1_2843835_2844057_-	NA	NA|455aa|down_3|CP025560.1_2844191_2845556_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|CP025560.1_2845997_2846153_+	NA	NA|214aa|down_5|CP025560.1_2846724_2847366_-	NA	NA|505aa|down_6|CP025560.1_2848063_2849578_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|CP025560.1_2849693_2850632_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|311aa|down_8|CP025560.1_2850674_2851607_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|CP025560.1_2851748_2853488_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
