The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	118768	125293	3015231	tail	Listeria_phage(33.33%)	10	NA	NA
AVU88535.1|118768_119221_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
AVU88536.1|119226_119562_-	XRE family transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
AVU88537.1|119778_120207_+	hypothetical protein	NA	NA	NA	NA	NA
AVU88538.1|120218_120635_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	7.7e-21
AVU88539.1|120912_121302_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
AVU88540.1|121314_121827_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
AVU88541.1|121874_122177_+	segregation and condensation protein B	NA	NA	NA	NA	NA
AVU88542.1|122218_122623_+	phenylalanine racemase	NA	NA	NA	NA	NA
AVU88543.1|122609_124478_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
AVU88544.1|124474_125293_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	682486	738867	3015231	transposase,portal,protease,integrase,tail,capsid,holin,terminase,head	Listeria_phage(42.42%)	66	692180:692197	727868:727885
AVU89046.1|682486_683638_-|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	46.3	3.4e-87
AVU89047.1|683659_684373_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89048.1|684427_684928_-	hypothetical protein	NA	A0A1S7FYX8	Listeria_phage	31.9	1.9e-13
AVU89049.1|684940_685267_-	XRE family transcriptional regulator	NA	Q0H244	Geobacillus_phage	47.1	1.6e-13
AVU89050.1|685440_685632_+	XRE family transcriptional regulator	NA	Q0H243	Geobacillus_phage	57.6	4.7e-10
AVU89051.1|685729_686056_+	DUF771 domain-containing protein	NA	A0A2H4J474	uncultured_Caudovirales_phage	41.1	4.9e-15
AVU89052.1|686228_687143_+	hypothetical protein	NA	A0A1W6JNI1	Staphylococcus_phage	51.5	7.8e-58
AVU89053.1|687144_687501_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AVU89054.1|687497_687914_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89055.1|688101_688821_+	DUF2786 domain-containing protein	NA	A0A1U9WR73	Streptococcus_virus	29.7	3.5e-21
AVU89056.1|688824_689127_+	hypothetical protein	NA	A0A059T695	Listeria_phage	94.3	3.3e-21
AVU89057.1|689123_689525_+	hypothetical protein	NA	A8ASP1	Listeria_phage	58.2	6.0e-39
AVU89058.1|689521_690007_+	pentapeptide repeat-containing protein	NA	A0A059T6G6	Listeria_phage	93.2	2.0e-44
AVU89059.1|690003_690465_+	hypothetical protein	NA	D9J0I6	Brochothrix_phage	35.9	6.7e-18
AVU89060.1|690461_690845_+	preprotein translocase subunit YajC	NA	A8ATZ3	Listeria_phage	77.2	5.4e-45
AVU89061.1|690865_691114_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	84.0	5.0e-28
AVU89062.1|691113_691695_+	DUF3310 domain-containing protein	NA	A0A059T5J6	Listeria_phage	76.3	2.3e-76
AVU89063.1|691694_692174_+	single-stranded DNA-binding protein	NA	A8ASP5	Listeria_phage	83.8	2.3e-69
692180:692197	attL	AAAGGAGCGATGAAAATG	NA	NA	NA	NA
AVU89064.1|692194_692434_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89065.1|692424_692610_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89066.1|692680_693199_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AVU89067.1|693195_693738_+|integrase	site-specific integrase	integrase	H0USV4	Bacillus_phage	53.3	2.5e-48
AVU89068.1|693753_694086_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89069.1|694356_694683_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89070.1|694679_695039_+	HNH endonuclease	NA	A0A075M5R4	Enterococcus_phage	46.2	5.4e-15
AVU89071.1|695137_695665_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	46.7	6.1e-31
AVU89072.1|695633_697385_+|terminase	terminase large subunit	terminase	A0A2H4JCI4	uncultured_Caudovirales_phage	50.7	4.1e-156
AVU89073.1|697391_697592_+	DUF1056 domain-containing protein	NA	NA	NA	NA	NA
AVU89074.1|697594_698830_+|portal	phage portal protein	portal	A0A2H4JAR2	uncultured_Caudovirales_phage	42.1	3.6e-82
AVU89075.1|698826_699393_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1D6Z2A7	Staphylococcus_phage	52.2	1.0e-44
AVU89076.1|699450_700626_+|capsid	phage major capsid protein	capsid	A0A060AI54	Enterococcus_phage	38.1	2.2e-44
AVU89077.1|700674_701013_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	37.8	8.1e-13
AVU89078.1|700982_701303_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AVU89079.1|701296_701662_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89080.1|701664_702063_+	hypothetical protein	NA	NA	NA	NA	NA
AVU91334.1|702083_702659_+|tail	phage tail protein	tail	M1PRQ7	Streptococcus_phage	42.4	1.2e-32
AVU89081.1|702748_703096_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89082.1|703292_707492_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	33.0	1.2e-12
AVU89083.1|707484_709728_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	29.4	1.2e-56
AVU89084.1|709733_712025_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	37.9	4.4e-134
AVU89085.1|712017_713079_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	51.0	1.2e-94
AVU89086.1|713117_713483_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
AVU89087.1|713495_713780_+|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.5e-41
AVU89088.1|716013_716928_+	peptidase	NA	NA	NA	NA	NA
AVU89089.1|716927_717287_+	DUF3221 domain-containing protein	NA	NA	NA	NA	NA
AVU89090.1|717818_718352_+	transcriptional regulator	NA	NA	NA	NA	NA
AVU89091.1|718415_719333_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVU89092.1|721564_722293_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89093.1|722435_723086_+	transaldolase	NA	M4SLG0	Cyanophage	30.2	2.6e-15
AVU89094.1|723128_724949_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	28.3	2.2e-48
AVU89095.1|725183_726575_+	amino acid transporter	NA	NA	NA	NA	NA
AVU89096.1|726663_727503_+	glyoxalase	NA	NA	NA	NA	NA
AVU89097.1|727585_727870_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89098.1|727967_728918_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
727868:727885	attR	CATTTTCATCGCTCCTTT	NA	NA	NA	NA
AVU89099.1|728941_729583_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVU89100.1|729625_732316_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
AVU89101.1|732361_733009_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVU89102.1|733017_733554_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVU91335.1|733540_734461_-	DUF975 domain-containing protein	NA	NA	NA	NA	NA
AVU89103.1|734651_734861_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89104.1|734928_735636_+	serine/threonine protein phosphatase	NA	A0A249Y183	Enterococcus_phage	27.8	2.5e-19
AVU89105.1|735679_736243_-	DUF420 domain-containing protein	NA	NA	NA	NA	NA
AVU89106.1|736362_736779_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89107.1|736830_737466_+	endonuclease III domain-containing protein	NA	NA	NA	NA	NA
AVU89108.1|737455_738352_-	Rgg family transcriptional regulator	NA	NA	NA	NA	NA
AVU89109.1|738582_738867_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1158399	1165823	3015231		Hokovirus(33.33%)	8	NA	NA
AVU89533.1|1158399_1158783_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
AVU89534.1|1158804_1159788_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
AVU89535.1|1159802_1160816_+	glycosyl transferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
AVU89536.1|1161024_1162515_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
AVU89537.1|1162526_1163351_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	4.4e-68
AVU89538.1|1163363_1163672_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AVU89539.1|1163733_1164138_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AVU89540.1|1164266_1165823_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 4
CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1252466	1354315	3015231	portal,protease,integrase,tail,capsid,holin,terminase,head,tRNA	Listeria_phage(70.49%)	113	1259742:1259758	1298418:1298434
AVU89645.1|1252466_1253519_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.9	1.3e-29
AVU89646.1|1253518_1255927_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AVU89647.1|1256087_1256789_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	3.0e-33
AVU89648.1|1256802_1260213_+	ABC transporter permease	NA	NA	NA	NA	NA
1259742:1259758	attL	TAGTAAAGCAATTTTAA	NA	NA	NA	NA
AVU89649.1|1260310_1260763_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVU89650.1|1260778_1263979_+	MMPL family transporter	NA	NA	NA	NA	NA
AVU89651.1|1264085_1264760_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	1.7e-49
AVU89652.1|1264796_1265723_-	ribonuclease HIII	NA	NA	NA	NA	NA
AVU89653.1|1265876_1266140_+	cell division protein ZapA	NA	NA	NA	NA	NA
AVU89654.1|1266139_1266682_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AVU89655.1|1266774_1268487_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	3.9e-18
AVU89656.1|1268509_1270867_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
AVU89657.1|1270947_1271259_+	thiol reductase thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	5.4e-19
AVU89658.1|1271334_1273146_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AVU89659.1|1273334_1274549_+	aspartate kinase	NA	NA	NA	NA	NA
AVU89660.1|1274604_1275099_-	DUF2507 domain-containing protein	NA	NA	NA	NA	NA
AVU89661.1|1275246_1276047_+	glutamate racemase	NA	NA	NA	NA	NA
AVU89662.1|1276059_1276806_+	ribonuclease PH	NA	NA	NA	NA	NA
AVU89663.1|1276809_1277421_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
AVU89664.1|1277457_1277982_+	metallophosphoesterase	NA	NA	NA	NA	NA
AVU89665.1|1278266_1279421_-|integrase	site-specific integrase	integrase	A0A059T688	Listeria_phage	93.8	3.0e-208
AVU89666.1|1279575_1280385_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89667.1|1280404_1280974_-	DUF4352 domain-containing protein	NA	R4IBV3	Listeria_phage	91.7	4.1e-09
AVU89668.1|1281024_1281477_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	92.0	1.4e-79
AVU89669.1|1281493_1281817_-	XRE family transcriptional regulator	NA	R4IDX0	Listeria_phage	71.0	5.0e-36
AVU89670.1|1282084_1282288_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89671.1|1282255_1282648_-	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	41.8	2.2e-17
AVU89672.1|1282714_1283038_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89673.1|1283052_1283259_+	XRE family transcriptional regulator	NA	Q8W5X9	Listeria_phage	94.1	4.6e-27
AVU89674.1|1283261_1283504_+	hypothetical protein	NA	Q8W5X8	Listeria_phage	97.5	9.2e-43
AVU89675.1|1283506_1283692_+	hypothetical protein	NA	A0A059T7Z3	Listeria_phage	93.4	4.6e-26
AVU89676.1|1284417_1284717_+	hypothetical protein	NA	A8ASN6	Listeria_phage	92.2	3.7e-41
AVU89677.1|1284697_1285141_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89678.1|1285157_1285715_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	50.5	2.4e-46
AVU89679.1|1285717_1285915_+	hypothetical protein	NA	A0A0B5CU49	Listeria_phage	95.4	2.0e-27
AVU89680.1|1285911_1286295_+	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	58.3	2.3e-35
AVU89681.1|1286291_1286687_+	hypothetical protein	NA	A8ASP3	Listeria_phage	78.8	2.9e-38
AVU89682.1|1286683_1287076_+	hypothetical protein	NA	A8ATD9	Listeria_phage	82.8	6.9e-56
AVU89683.1|1287179_1287452_+	hypothetical protein	NA	A0A059T7Z9	Listeria_phage	86.7	1.5e-38
AVU89684.1|1287448_1287643_+	hypothetical protein	NA	A8ASP4	Listeria_phage	79.7	1.4e-22
AVU89685.1|1287697_1288258_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89686.1|1288529_1288730_+	hypothetical protein	NA	A8ATE8	Listeria_phage	55.4	1.2e-11
AVU89687.1|1288726_1289338_+	hypothetical protein	NA	B6D7K1	Listeria_phage	50.0	4.0e-50
AVU89688.1|1289353_1289587_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89689.1|1289583_1290354_+	DUF1351 domain-containing protein	NA	B6D7K2	Listeria_phage	27.0	6.6e-18
AVU89690.1|1290356_1290992_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89691.1|1291059_1292748_+	hypothetical protein	NA	A8ATS1	Listeria_phage	43.1	5.2e-124
AVU89692.1|1292750_1294556_+	DNA primase	NA	A8ATS2	Listeria_phage	40.8	9.7e-129
AVU89693.1|1294860_1295130_+	hypothetical protein	NA	W0GBM0	Listeria_phage	84.3	9.6e-17
AVU91343.1|1295240_1295771_+	DUF3310 domain-containing protein	NA	A0A059T7T5	Listeria_phage	72.3	5.3e-67
AVU89694.1|1295962_1296388_+	DUF722 domain-containing protein	NA	A8ATF6	Listeria_phage	98.6	1.5e-72
AVU89695.1|1296994_1297309_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	99.0	3.8e-57
AVU89696.1|1297357_1297714_+	hypothetical protein	NA	A0A059T7Y1	Listeria_phage	97.0	4.5e-46
AVU89697.1|1297710_1299354_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	98.7	0.0e+00
1298418:1298434	attR	TAGTAAAGCAATTTTAA	NA	NA	NA	NA
AVU89698.1|1299363_1299753_-	DUF2513 domain-containing protein	NA	A0A2I7SCV0	Paenibacillus_phage	36.4	9.7e-18
AVU89699.1|1299803_1300934_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	96.3	3.9e-208
AVU89700.1|1300930_1301647_+|protease	Clp protease ClpP	protease	A0A1S5SFF8	Streptococcus_phage	56.5	6.1e-66
AVU89701.1|1301673_1302825_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	92.7	7.9e-201
AVU89702.1|1303011_1303311_+	hypothetical protein	NA	A0A059T7R0	Listeria_phage	97.0	1.3e-46
AVU89703.1|1303294_1303660_+|head,tail	phage head-tail adapter protein	head,tail	A0A059T6F2	Listeria_phage	96.7	2.7e-62
AVU89704.1|1303656_1304058_+	hypothetical protein	NA	A8ATA2	Listeria_phage	96.2	3.4e-66
AVU89705.1|1304054_1304438_+	DUF3168 domain-containing protein	NA	A0A059T681	Listeria_phage	94.5	5.2e-64
AVU89706.1|1304458_1305046_+|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	97.4	2.4e-105
AVU89707.1|1305115_1305448_+	hypothetical protein	NA	A8ATA5	Listeria_phage	90.9	1.3e-47
AVU89708.1|1305663_1310586_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	95.5	0.0e+00
AVU89709.1|1310582_1312232_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	98.9	0.0e+00
AVU89710.1|1312247_1314542_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	97.5	0.0e+00
AVU89711.1|1314531_1315626_+	carbohydrate-binding protein CenC	NA	A0A059T7R4	Listeria_phage	97.3	1.2e-201
AVU89712.1|1315677_1315986_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	88.9	3.9e-38
AVU89713.1|1315985_1316252_+|holin	phage holin	holin	A0A059T684	Listeria_phage	97.7	2.8e-40
AVU89714.1|1316251_1317097_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	94.7	1.4e-138
AVU89715.1|1317284_1317770_+	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	40.6	4.6e-17
AVU89716.1|1318279_1318513_+	hypothetical protein	NA	R4IDW6	Listeria_phage	96.1	1.0e-35
AVU89717.1|1318509_1318692_+	hypothetical protein	NA	A0A059T5E7	Listeria_phage	50.9	3.6e-07
AVU89718.1|1318712_1319366_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89719.1|1320159_1321518_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
AVU89720.1|1321560_1322154_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89721.1|1322307_1322715_-	VOC family protein	NA	NA	NA	NA	NA
AVU89722.1|1322879_1323479_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
AVU89723.1|1323510_1323771_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89724.1|1323894_1325307_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
AVU89725.1|1325331_1325595_+	DUF3116 domain-containing protein	NA	NA	NA	NA	NA
AVU89726.1|1325762_1326239_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
AVU89727.1|1326276_1326522_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89728.1|1326518_1327724_-	MFS transporter	NA	NA	NA	NA	NA
AVU89729.1|1327720_1327930_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89730.1|1327928_1328588_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AVU89731.1|1328629_1328824_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89732.1|1328890_1329739_-	YitT family protein	NA	NA	NA	NA	NA
AVU89733.1|1330358_1331072_+	trehalose operon repressor	NA	NA	NA	NA	NA
AVU89734.1|1331102_1332749_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
AVU89735.1|1332767_1334252_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
AVU89736.1|1334367_1334820_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AVU89737.1|1334866_1335331_-	hypothetical protein	NA	NA	NA	NA	NA
AVU89738.1|1335519_1336440_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVU89739.1|1336459_1337707_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
AVU89740.1|1337690_1338521_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
AVU89741.1|1338656_1339796_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVU89742.1|1339876_1340272_-	XRE family transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
AVU89743.1|1340422_1340638_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVU89744.1|1340756_1341290_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89745.1|1341307_1341973_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89746.1|1342234_1343173_+	hypothetical protein	NA	NA	NA	NA	NA
AVU89747.1|1343287_1344571_+	trigger factor	NA	NA	NA	NA	NA
AVU89748.1|1344756_1346016_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
AVU89749.1|1346134_1346701_+	signal peptidase I	NA	NA	NA	NA	NA
AVU89750.1|1346735_1347305_+	signal peptidase I	NA	NA	NA	NA	NA
AVU89751.1|1347406_1347949_+	signal peptidase I	NA	NA	NA	NA	NA
AVU89752.1|1347958_1348822_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
AVU89753.1|1348818_1349604_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
AVU89754.1|1349737_1350598_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AVU89755.1|1350869_1352948_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
AVU89756.1|1353010_1354315_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
>prophage 5
CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1818272	1865293	3015231	portal,protease,tail,capsid,holin,terminase,head	Erysipelothrix_phage(71.43%)	50	NA	NA
AVU90179.1|1818272_1819718_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	56.0	2.6e-140
AVU90180.1|1819896_1820439_+	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	30.2	1.8e-17
AVU90181.1|1820532_1822101_-	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	59.4	2.3e-166
AVU90182.1|1822102_1822519_-	recombinase	NA	NA	NA	NA	NA
AVU90183.1|1822518_1824081_-	recombinase family protein	NA	A0A2K5B2B2	Erysipelothrix_phage	48.4	6.4e-137
AVU90184.1|1824134_1824362_-	hypothetical protein	NA	NA	NA	NA	NA
AVU90185.1|1824501_1824846_+	ArsR family transcriptional regulator	NA	A0A218MNF3	uncultured_virus	40.6	3.8e-10
AVU90186.1|1824842_1826156_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	70.1	4.4e-163
AVU90187.1|1826171_1826573_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	68.0	2.1e-47
AVU90188.1|1826688_1827882_-	ChrA protein	NA	NA	NA	NA	NA
AVU90189.1|1827893_1828202_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVU90190.1|1828398_1829106_-	amidase	NA	H7BVK7	unidentified_phage	41.3	3.5e-42
AVU90191.1|1829102_1829513_-|holin	holin	holin	A0A2K5B2A2	Erysipelothrix_phage	69.1	6.3e-52
AVU90192.1|1829589_1832061_-	glycosyl hydrolase	NA	A0A2K5B2A1	Erysipelothrix_phage	64.6	0.0e+00
AVU91355.1|1832057_1832633_-	hypothetical protein	NA	A0A2K5B2A0	Erysipelothrix_phage	51.9	1.3e-47
AVU90193.1|1832648_1832843_-	hypothetical protein	NA	A0A2K5B299	Erysipelothrix_phage	55.4	1.4e-14
AVU90194.1|1832854_1835374_-	hypothetical protein	NA	A0A2K5B298	Erysipelothrix_phage	60.6	3.6e-307
AVU90195.1|1835381_1836155_-|tail	phage tail family protein	tail	A0A2I4R672	Erysipelothrix_phage	47.3	9.7e-70
AVU90196.1|1836170_1838792_-|tail	phage tail tape measure protein	tail	B6CXF2	Clostridium_phage	47.8	4.3e-69
AVU90197.1|1839051_1839438_-	hypothetical protein	NA	A0A2K5B295	Erysipelothrix_phage	64.3	6.6e-35
AVU90198.1|1839450_1840047_-|tail	phage tail protein	tail	A0A2K5B294	Erysipelothrix_phage	77.4	1.7e-82
AVU90199.1|1840050_1840398_-	hypothetical protein	NA	A0A2K5B293	Erysipelothrix_phage	50.9	9.2e-28
AVU90200.1|1840394_1840826_-	hypothetical protein	NA	A0A2K5B292	Erysipelothrix_phage	62.2	3.0e-44
AVU90201.1|1840818_1841154_-|head,tail	head-tail adaptor protein	head,tail	A0A2K5B291	Erysipelothrix_phage	51.4	3.5e-24
AVU90202.1|1841157_1841466_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2K5B290	Erysipelothrix_phage	77.5	5.4e-40
AVU90203.1|1841480_1841708_-	Head fiber protein	NA	A0A2K5B289	Erysipelothrix_phage	64.0	9.0e-16
AVU90204.1|1841726_1842923_-|capsid	phage major capsid protein	capsid	A0A2I4R671	Erysipelothrix_phage	68.1	1.6e-156
AVU90205.1|1842938_1843622_-|protease	Clp protease ClpP	protease	Q6DMU1	Streptococcus_phage	62.8	8.3e-73
AVU90206.1|1843590_1844874_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	78.3	2.5e-187
AVU91356.1|1844895_1846494_-|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	77.7	1.8e-243
AVU90207.1|1846562_1847027_-	gamma-glutamylcyclotransferase	NA	G3MAQ5	Bacillus_virus	35.0	1.4e-15
AVU90208.1|1847069_1847969_-	amidoligase	NA	A0A2K9V489	Faecalibacterium_phage	38.6	6.5e-49
AVU90209.1|1848071_1848299_-	DUF4314 domain-containing protein	NA	NA	NA	NA	NA
AVU90210.1|1848295_1848946_-	virulence protein	NA	A0A2K5B280	Erysipelothrix_phage	45.0	2.1e-41
AVU90211.1|1849034_1850273_-	DNA modification methylase	NA	A0A2I4R670	Erysipelothrix_phage	68.4	3.5e-170
AVU90212.1|1850253_1851429_-	methionine adenosyltransferase	NA	A0A2K5B278	Erysipelothrix_phage	67.3	4.1e-152
AVU90213.1|1851447_1851999_-|terminase	terminase	terminase	A0A2K5B277	Erysipelothrix_phage	66.7	1.5e-69
AVU90214.1|1852104_1852470_-	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	60.5	1.9e-39
AVU90215.1|1852684_1853143_-	hypothetical protein	NA	NA	NA	NA	NA
AVU90216.1|1853139_1854498_-	ATP-dependent helicase	NA	A0A2K5B273	Erysipelothrix_phage	66.0	5.9e-155
AVU90217.1|1854478_1854760_-	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.6	3.6e-22
AVU90218.1|1855019_1857365_-	hypothetical protein	NA	A0A2K5B271	Erysipelothrix_phage	48.6	5.9e-219
AVU91357.1|1857383_1858160_-	phage antirepressor	NA	A0A0B5A507	Paenibacillus_phage	49.0	6.6e-66
AVU90219.1|1858252_1860187_-	hypothetical protein	NA	A0A2K5B2B0	Erysipelothrix_phage	63.4	9.1e-242
AVU90220.1|1860183_1860738_-	DUF2815 domain-containing protein	NA	A0A2K5B2A9	Erysipelothrix_phage	71.3	3.6e-66
AVU90221.1|1860740_1861871_-	DUF2800 domain-containing protein	NA	A0A2K5B2A8	Erysipelothrix_phage	65.0	1.4e-141
AVU90222.1|1861867_1862185_-	rRNA biogenesis protein rrp5	NA	A0A2K5B2A7	Erysipelothrix_phage	42.3	1.3e-12
AVU90223.1|1862186_1862390_-	hypothetical protein	NA	NA	NA	NA	NA
AVU90224.1|1862492_1862996_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AVU90225.1|1863403_1865293_-	XRE family transcriptional regulator	NA	E4ZFJ9	Streptococcus_phage	31.0	1.2e-81
>prophage 6
CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	1941088	1949374	3015231		Synechococcus_phage(33.33%)	8	NA	NA
AVU90293.1|1941088_1941655_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
AVU90294.1|1941651_1942701_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	1.7e-61
AVU90295.1|1942719_1944147_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
AVU90296.1|1944131_1946351_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	1.3e-159
AVU90297.1|1946343_1947027_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVU90298.1|1947030_1947276_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVU90299.1|1947287_1948001_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
AVU90300.1|1948081_1949374_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 7
CP025560	Listeria monocytogenes strain PIR00545 chromosome, complete genome	3015231	2605893	2613737	3015231		Streptococcus_phage(50.0%)	7	NA	NA
AVU90919.1|2605893_2606865_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
AVU90920.1|2606872_2607841_-	gluconeogenesis factor	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
AVU90921.1|2607842_2608718_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
AVU90922.1|2608825_2610556_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	4.3e-174
AVU90923.1|2610597_2611659_-	galactose mutarotase	NA	NA	NA	NA	NA
AVU90924.1|2611675_2612659_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
AVU90925.1|2612777_2613737_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 1
CP025561	Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence	57553	0	54223	57553	protease,transposase	Streptococcus_phage(19.23%)	57	NA	NA
AVU91384.1|268_1138_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	51.1	7.1e-69
AVU91385.1|1227_1944_-	AP2 domain-containing protein	NA	O03945	Lactobacillus_phage	31.0	3.8e-20
AVU91386.1|1959_2682_-	CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
AVU91387.1|2685_3111_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91388.1|3111_3360_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91389.1|3481_3970_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91390.1|4128_4512_-	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	53.4	2.2e-14
AVU91391.1|4524_5187_-	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
AVU91392.1|5186_5513_-	hypothetical protein	NA	A0A2K9V3N4	Faecalibacterium_phage	40.8	3.2e-06
AVU91393.1|5643_5895_+	hypothetical protein	NA	NA	NA	NA	NA
AVU91394.1|5955_6198_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AVU91395.1|6191_6533_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
AVU91396.1|6725_8861_-	cadmium-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	1.6e-247
AVU91397.1|8860_9220_-	cadmium resistance transcriptional regulator CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
AVU91398.1|9499_10054_+	resolvase	NA	A0A0A7NPV4	Enterobacteria_phage	46.1	5.4e-38
AVU91399.1|10057_12973_+|transposase	DDE transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	1.9e-174
AVU91400.1|14155_16312_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.0	1.1e-70
AVU91401.1|16527_17091_+	transposon DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	2.0e-40
AVU91402.1|17341_18553_+	hypothetical protein	NA	NA	NA	NA	NA
AVU91403.1|18545_20399_+	DUF87 domain-containing protein	NA	NA	NA	NA	NA
AVU91404.1|20883_21525_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	3.0e-101
AVU91441.1|21644_23528_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.3	5.6e-87
AVU91405.1|23990_24782_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91406.1|24945_25266_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91407.1|25265_25505_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91408.1|25625_26495_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVU91409.1|26740_28105_-	oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.5	1.9e-07
AVU91410.1|28728_29409_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	2.6e-119
AVU91411.1|29974_31477_-	hypothetical protein	NA	H2DE57	Erwinia_phage	46.0	5.2e-11
AVU91412.1|31480_31879_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91413.1|32052_32388_+	XRE family transcriptional regulator	NA	A0A139ZPK3	Marinitoga_camini_virus	35.0	2.8e-05
AVU91414.1|32424_32955_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91415.1|33068_33833_-	Fic family protein	NA	A0A0G3Y4Q5	Ostreid_herpesvirus	29.4	2.6e-06
AVU91416.1|33852_34224_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91417.1|34234_35575_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91418.1|35567_36008_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91419.1|36019_36259_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91420.1|36656_37574_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91421.1|37576_37966_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91422.1|37928_38165_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91423.1|38180_38297_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91424.1|38508_39735_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	60.6	4.7e-135
AVU91425.1|39703_40501_+|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	63.2	3.3e-81
AVU91426.1|40577_41180_+	DDE domain-containing protein	NA	U5P429	Shigella_phage	41.7	2.0e-33
AVU91427.1|41213_41969_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91428.1|42243_43878_-	plasmid replication protein	NA	NA	NA	NA	NA
AVU91429.1|44617_45592_+	chromosome partitioning protein ParA	NA	F0PIG8	Enterococcus_phage	35.0	2.4e-33
AVU91430.1|45569_45866_+	replication and copy control-associated protein	NA	NA	NA	NA	NA
AVU91431.1|45916_47197_-	excinuclease ABC subunit A	NA	O64031	Bacillus_phage	44.9	5.2e-92
AVU91432.1|47184_47529_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91442.1|47733_48468_-	ParA family protein	NA	NA	NA	NA	NA
AVU91433.1|48642_49983_-|transposase	transposase	transposase	A0A0C5AC89	Paenibacillus_phage	38.6	1.1e-31
AVU91434.1|50258_52373_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.1	3.4e-117
AVU91443.1|52800_53037_-	XRE family transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	53.4	6.7e-14
AVU91444.1|52999_53278_+	hypothetical protein	NA	NA	NA	NA	NA
AVU91435.1|53397_53625_-	hypothetical protein	NA	NA	NA	NA	NA
AVU91436.1|53614_54223_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	42.9	1.0e-21
