assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003031835.1_ASM303183v1	CP020565	Salmonella enterica subsp. enterica serovar Typhimurium strain FORC58 chromosome, complete genome	2	941033-942403	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,22,22	22	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|49aa|up_0|CP020565.1_940766_940913_+,NA|59aa|down_6|CP020565.1_949821_949998_-	NA|919aa|up_9|CP020565.1_928017_930774_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_8|CP020565.1_930831_932127_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|CP020565.1_932178_934413_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|96aa|up_6|CP020565.1_934565_934853_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_5|CP020565.1_934818_935115_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_4|CP020565.1_935882_936683_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|CP020565.1_936910_938548_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|CP020565.1_938630_939929_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_1|CP020565.1_940064_940736_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|49aa|up_0|CP020565.1_940766_940913_+	NA	NA|266aa|down_0|CP020565.1_942500_943298_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP020565.1_943385_943748_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|CP020565.1_944171_945971_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|CP020565.1_945970_947683_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|CP020565.1_947758_948493_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|361aa|down_5|CP020565.1_948705_949788_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|59aa|down_6|CP020565.1_949821_949998_-	NA	cas3|851aa|down_7|CP020565.1_950213_952766_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_8|CP020565.1_952777_954337_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_9|CP020565.1_954333_954894_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCA_003031835.1_ASM303183v1	CP020565	Salmonella enterica subsp. enterica serovar Typhimurium strain FORC58 chromosome, complete genome	3	958662-959301	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	10,10	10	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|59aa|up_8|CP020565.1_949821_949998_-,NA	NA|361aa|up_9|CP020565.1_948705_949788_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|59aa|up_8|CP020565.1_949821_949998_-	NA	cas3|851aa|up_7|CP020565.1_950213_952766_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|CP020565.1_952777_954337_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP020565.1_954333_954894_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP020565.1_954907_955966_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP020565.1_955976_956723_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP020565.1_956704_957355_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP020565.1_957351_958272_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP020565.1_958271_958565_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP020565.1_959315_960362_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP020565.1_960612_961521_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP020565.1_961530_962970_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP020565.1_962956_963562_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|93aa|down_4|CP020565.1_963657_963936_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP020565.1_964126_964438_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP020565.1_964456_965167_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP020565.1_965166_965646_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP020565.1_965642_966692_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP020565.1_966672_967434_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
