The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	7549	59744	4723880	protease,transposase	Acidithiobacillus_phage(16.67%)	37	NA	NA
AVU01266.1|7549_8386_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVU01267.1|8570_9377_+	M48 family peptidase	NA	NA	NA	NA	NA
AVU01268.1|9653_10847_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AVU01269.1|11000_11669_+	energy transducer TonB	NA	NA	NA	NA	NA
AVU01270.1|11753_12515_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AVU01271.1|12561_12984_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AVU01272.1|12987_13401_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AVU01273.1|13696_14464_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AVU01274.1|14474_14744_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01275.1|14818_16279_-	cardiolipin synthase	NA	NA	NA	NA	NA
AVU01276.1|17424_18801_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.1	1.9e-76
AVU01277.1|19029_19908_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.7	1.5e-87
AVU01278.1|19913_21033_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.6	1.1e-42
AVU01279.1|21293_22421_-	radical SAM protein	NA	NA	NA	NA	NA
AVU01280.1|23491_24832_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01281.1|25049_25742_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AVU04535.1|25858_26179_+	DUF1820 domain-containing protein	NA	NA	NA	NA	NA
AVU01282.1|27476_29000_-	peptidase S41	NA	A0A0R6PIZ1	Moraxella_phage	29.2	1.0e-25
AVU01283.1|29104_30340_-	peptidase M23	NA	NA	NA	NA	NA
AVU01284.1|30500_31157_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01285.1|31319_33131_+	aminopeptidase	NA	NA	NA	NA	NA
AVU01286.1|33278_33629_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AVU01287.1|33935_35066_-	cellulase	NA	NA	NA	NA	NA
AVU01288.1|35848_36901_-	cellulase	NA	NA	NA	NA	NA
AVU01289.1|37601_38675_-	cellulase	NA	NA	NA	NA	NA
AVU01290.1|38791_38998_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01291.1|38983_40042_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	45.7	3.9e-77
AVU01292.1|43012_44494_-	glutamate synthase small subunit	NA	NA	NA	NA	NA
AVU01293.1|44688_49161_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
AVU01294.1|49362_49743_-	Elastase inhibitor AFLEI Flags: Precursor	NA	NA	NA	NA	NA
AVU01295.1|49889_51077_+	DNA topoisomerase	NA	A0A0U2TSJ7	Niemeyer_virus	35.3	1.3e-41
AVU01296.1|51279_51585_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04536.1|52771_53911_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AVU01297.1|54224_55010_-	DUF1868 domain-containing protein	NA	NA	NA	NA	NA
AVU01298.1|55020_57609_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AVU01299.1|57781_58939_+	ROK family protein	NA	NA	NA	NA	NA
AVU01300.1|58981_59744_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	327315	390637	4723880	transposase	Ralstonia_phage(33.33%)	53	NA	NA
AVU01483.1|327315_328436_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.6	3.9e-43
AVU01484.1|329284_329731_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01485.1|329727_331728_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01486.1|332501_332972_-	4-hydroxyphenylacetate 3-monooxygenase	NA	NA	NA	NA	NA
AVU01487.1|333388_333631_-	serine kinase	NA	NA	NA	NA	NA
AVU01488.1|333640_334579_-	serine kinase	NA	NA	NA	NA	NA
AVU01489.1|334575_335403_-	4-hydroxyphenylacetate catabolism regulator HpaA	NA	NA	NA	NA	NA
AVU01490.1|335399_335660_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVU01491.1|335664_336309_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVU01492.1|336295_337249_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AVU01493.1|337341_337983_-	type III secretion protein HpaP	NA	NA	NA	NA	NA
AVU01494.1|337982_339905_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVU04566.1|339913_340987_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AVU01495.1|341202_341658_+	HrpB1 family type III secretion system apparatus protein	NA	NA	NA	NA	NA
AVU01496.1|341691_342084_+	type III secretion protein HrpB2	NA	NA	NA	NA	NA
AVU01497.1|342085_342850_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AVU01498.1|342857_343487_+	type III secretion protein HrpB4	NA	NA	NA	NA	NA
AVU01499.1|343471_344173_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AVU01500.1|344162_345491_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AVU01501.1|345483_345993_+	type III secretion protein HrpB7	NA	NA	NA	NA	NA
AVU01502.1|345989_346820_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AVU01503.1|346902_348726_+	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AVU01504.1|349465_349897_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01505.1|350307_350871_+	lytic transglycosylase	NA	A0A0K2QQJ4	Ralstonia_phage	39.4	5.2e-12
AVU01506.1|351334_352888_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01507.1|354154_354496_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04567.1|354680_357239_+	DUF3772 domain-containing protein	NA	NA	NA	NA	NA
AVU01508.1|357257_357518_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01509.1|357597_358566_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
AVU01510.1|358691_360416_-	AarF/ABC1/UbiB kinase family protein	NA	A0A0P0CRE2	Ostreococcus_lucimarinus_virus	28.7	3.0e-34
AVU01511.1|360426_360639_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01512.1|360656_361598_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
AVU01513.1|363150_364779_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AVU01514.1|365316_366846_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
AVU01515.1|366842_369074_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
AVU01516.1|369076_370834_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AVU04568.1|370890_372780_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
AVU01517.1|372776_375380_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AVU01518.1|375402_375588_+	DUF2934 domain-containing protein	NA	NA	NA	NA	NA
AVU01519.1|375701_377864_+	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AVU04569.1|377880_378513_+	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AVU01520.1|378878_380255_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU01521.1|380336_381092_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AVU01522.1|381055_381361_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01523.1|381469_382879_+	FAD-binding protein	NA	NA	NA	NA	NA
AVU01524.1|383034_383229_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01525.1|383227_383659_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01526.1|384129_385506_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.7	3.2e-63
AVU01527.1|385698_387075_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU01528.1|387111_387306_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01529.1|387745_389035_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.2	6.0e-40
AVU01530.1|389042_389294_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01531.1|389656_390637_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	56.7	1.4e-89
>prophage 3
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	488107	573693	4723880	transposase,tRNA	Acidithiobacillus_phage(20.0%)	55	NA	NA
AVU01606.1|488107_488671_-|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein RimN	tRNA	NA	NA	NA	NA
AVU01607.1|488681_491174_-	DNA topoisomerase I	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	35.3	1.9e-114
AVU01608.1|491356_492631_-	RDD family protein	NA	NA	NA	NA	NA
AVU01609.1|492672_493395_-	DUF4339 domain-containing protein	NA	NA	NA	NA	NA
AVU01610.1|493435_493909_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01611.1|493951_495094_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AVU01612.1|495165_496302_-	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	57.1	1.7e-09
AVU01613.1|496434_496947_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.0	2.6e-18
AVU01614.1|497340_498264_+|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
AVU01615.1|498263_499577_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
AVU01616.1|501518_502796_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AVU01617.1|502993_503818_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AVU01618.1|503818_504877_+	CDP-glycerol glycerophosphotransferase	NA	NA	NA	NA	NA
AVU01619.1|505043_506549_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04581.1|506545_507055_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01620.1|507164_508298_-	GTP cyclohydrolase II RibA	NA	A0A2H4PQS2	Staphylococcus_phage	44.2	6.1e-28
AVU01621.1|508540_509062_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVU01622.1|509260_510175_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AVU01623.1|510275_510716_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AVU01624.1|510824_512699_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.5	1.8e-37
AVU01625.1|512891_513212_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01626.1|513829_514063_-	hypothetical protein	NA	V9IQN0	Stenotrophomonas_phage	53.1	4.1e-16
AVU01627.1|515939_517829_-	transcription termination factor Rho	NA	NA	NA	NA	NA
AVU01628.1|518045_518387_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	44.4	2.3e-15
AVU01629.1|518585_520310_+	ATP-dependent RNA helicase RhlB	NA	A0A1V0SBR7	Catovirus	29.1	1.8e-47
AVU01630.1|520385_521072_+	cell division ATP-binding protein FtsE	NA	NA	NA	NA	NA
AVU01631.1|521068_522019_+	ABC transporter permease	NA	NA	NA	NA	NA
AVU04582.1|522075_522870_+	response regulator	NA	NA	NA	NA	NA
AVU01632.1|522866_523592_+	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	44.3	4.7e-50
AVU01633.1|523808_524684_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	39.5	3.6e-44
AVU01634.1|524762_525377_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
AVU01635.1|525429_526722_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AVU01636.1|529012_529300_+	co-chaperone GroES	NA	A0A221S331	uncultured_virus	40.0	5.1e-16
AVU01637.1|529443_531084_+	molecular chaperone GroEL	NA	A0A2I7SAK5	Vibrio_phage	63.5	5.1e-177
AVU01638.1|531384_533661_-	type III secretion system effector protein	NA	NA	NA	NA	NA
AVU01639.1|534768_535737_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	9.6e-99
AVU04583.1|537870_539247_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.0	6.0e-62
AVU01640.1|539630_540599_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU01641.1|541530_542604_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	47.9	4.3e-84
AVU01642.1|543120_545298_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01643.1|545391_547809_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01644.1|548072_548993_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
AVU01645.1|548992_549511_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01646.1|549672_552498_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
AVU01647.1|552593_553154_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	30.2	1.4e-12
AVU01648.1|554427_555804_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	52.7	3.9e-61
AVU01649.1|555701_556304_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01650.1|558809_559310_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01651.1|560210_561158_-	nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA	NA
AVU01652.1|561293_561884_+	malonic semialdehyde reductase	NA	NA	NA	NA	NA
AVU01653.1|562094_562838_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AVU01654.1|565153_567841_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AVU01655.1|567927_568665_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04584.1|568675_570088_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	7.3e-63
AVU01656.1|572316_573693_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	7.1e-63
>prophage 4
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	579957	664475	4723880	protease,transposase	Leptospira_phage(15.38%)	49	NA	NA
AVU04586.1|579957_581059_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	2.2e-43
AVU01659.1|581546_582923_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.0	6.0e-62
AVU01660.1|583827_584790_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AVU01661.1|585938_589763_+	avirulence protein	NA	NA	NA	NA	NA
AVU01662.1|590832_592416_-	oxidoreductase	NA	M1NLX1	Moumouvirus	27.5	6.5e-36
AVU01663.1|592806_592998_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01664.1|595498_597823_-	S9 family peptidase	NA	NA	NA	NA	NA
AVU01665.1|599726_600818_-	DUF1615 domain-containing protein	NA	NA	NA	NA	NA
AVU04587.1|601782_602661_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVU01666.1|602849_603734_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVU01667.1|604011_605784_-	cellulase	NA	NA	NA	NA	NA
AVU01668.1|606181_607882_-	1,4-beta-cellobiosidase	NA	NA	NA	NA	NA
AVU01669.1|609036_610413_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA	NA
AVU04588.1|610499_611495_-	type III secretion system effector protein	NA	NA	NA	NA	NA
AVU01670.1|611740_612652_+	magnesium transporter	NA	NA	NA	NA	NA
AVU01671.1|613186_613471_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01672.1|613800_614247_+	autotransporter	NA	NA	NA	NA	NA
AVU01673.1|614558_615660_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	5.0e-43
AVU01674.1|616369_617746_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.7	3.2e-63
AVU01675.1|618918_620610_-	alpha,alpha-trehalase TreA	NA	NA	NA	NA	NA
AVU01676.1|620862_621648_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AVU01677.1|622891_623896_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01678.1|623934_624864_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AVU01679.1|625399_628288_-	insulinase family protein	NA	NA	NA	NA	NA
AVU01680.1|628540_631123_+	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	29.2	3.2e-08
AVU01681.1|631700_632499_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU01682.1|635102_636557_-	endoglucanase	NA	H2DE45	Erwinia_phage	32.6	5.2e-48
AVU01683.1|636764_638252_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	57.1	2.4e-125
AVU04589.1|638531_639485_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	38.0	1.7e-15
AVU01684.1|639653_641303_+	peptidase M20	NA	NA	NA	NA	NA
AVU01685.1|642294_644232_+	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA	NA
AVU01686.1|644383_645052_+	carboxylesterase	NA	NA	NA	NA	NA
AVU01687.1|645056_646109_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.6	1.4e-18
AVU01688.1|646139_646877_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVU01689.1|646907_647822_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
AVU01690.1|648384_649185_-	DUF481 domain-containing protein	NA	NA	NA	NA	NA
AVU01691.1|649746_650712_+	YafY family transcriptional regulator	NA	NA	NA	NA	NA
AVU01692.1|650820_651390_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01693.1|651774_652086_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01694.1|652153_654247_+	S9 family peptidase	NA	NA	NA	NA	NA
AVU01695.1|654841_656026_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVU01696.1|656135_658271_+	oligopeptidase B	NA	F2Y2Z7	Organic_Lake_phycodnavirus	26.1	1.8e-28
AVU04590.1|658614_659013_+	DUF454 domain-containing protein	NA	NA	NA	NA	NA
AVU01697.1|659070_659313_+	sugar transporter	NA	NA	NA	NA	NA
AVU01698.1|659302_660157_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AVU01699.1|660144_660825_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AVU04591.1|661018_661936_+	tyrosine recombinase XerC	NA	A0A142F2H8	Mycobacterium_phage	28.1	1.7e-12
AVU01700.1|662451_663003_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AVU01701.1|663107_664475_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A2H5BJT2	Erwinia_phage	29.5	4.7e-43
>prophage 5
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	682311	769748	4723880	tail,protease,transposase	Ralstonia_phage(16.67%)	59	NA	NA
AVU01716.1|682311_683343_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	7.9e-75
AVU01717.1|684644_686036_+	endopolygalacturonase	NA	NA	NA	NA	NA
AVU01718.1|686304_687444_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AVU01719.1|687440_688856_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	50.6	4.3e-15
AVU01720.1|689357_690563_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.9	1.6e-66
AVU01721.1|691642_691921_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01722.1|691908_692607_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
AVU01723.1|692621_693635_+	lipoyl synthase	NA	NA	NA	NA	NA
AVU01724.1|694033_696217_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	31.4	3.7e-82
AVU01725.1|696508_697375_-	endonuclease	NA	NA	NA	NA	NA
AVU01726.1|697536_698592_+	NUDIX domain-containing protein	NA	A0A1B0V161	Roseobacter_phage	47.1	3.7e-80
AVU01727.1|698714_700118_+	nicotinate phosphoribosyltransferase	NA	A0A218M332	Acidovorax_phage	52.6	6.6e-133
AVU01728.1|702337_703099_+	DUF2242 domain-containing protein	NA	NA	NA	NA	NA
AVU01729.1|703223_703604_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AVU01730.1|703775_705113_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01731.1|705133_706075_+	6-phosphogluconate dehydrogenase (decarboxylating)	NA	M4SJX8	Cyanophage	44.6	8.5e-68
AVU01732.1|706414_707473_-	oxidoreductase	NA	NA	NA	NA	NA
AVU04593.1|707632_707995_+	BON domain-containing protein	NA	NA	NA	NA	NA
AVU01733.1|708279_710091_+	PAS domain S-box protein	NA	A0A2K9L0Z8	Tupanvirus	27.8	3.5e-09
AVU01734.1|710087_710528_+	response regulator	NA	NA	NA	NA	NA
AVU01735.1|710531_712034_+	hybrid sensor histidine kinase/response regulator	NA	A0A2K9L5I4	Tupanvirus	26.9	4.9e-09
AVU01736.1|712125_712641_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVU01737.1|712809_713547_-	KR domain-containing protein	NA	NA	NA	NA	NA
AVU01738.1|713614_714799_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVU01739.1|716199_717168_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.7	2.3e-100
AVU01740.1|718196_720905_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AVU01741.1|721055_723950_+	DUF4982 domain-containing protein	NA	L0N6M2	Herpes_simplex_virus	25.2	2.0e-22
AVU01742.1|723946_726343_+	alpha-N-acetylglucosaminidase	NA	NA	NA	NA	NA
AVU01743.1|726476_727643_+	DUF5009 domain-containing protein	NA	NA	NA	NA	NA
AVU01744.1|727857_728625_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVU01745.1|728669_729947_+	glucose/galactose MFS transporter	NA	NA	NA	NA	NA
AVU01746.1|729987_731055_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AVU01747.1|731061_732090_+	SIS domain-containing protein	NA	NA	NA	NA	NA
AVU01748.1|732092_733247_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
AVU01749.1|733751_734357_-	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD	NA	NA	NA	NA	NA
AVU01750.1|734353_735607_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
AVU01751.1|735608_737507_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
AVU01752.1|737508_739551_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
AVU01753.1|740764_741997_-	multifunctional CCA addition/repair protein	NA	K4IEX3	Salmonella_phage	41.5	2.3e-73
AVU01754.1|742217_743186_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
AVU01755.1|748580_749639_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
AVU01756.1|749633_750377_-	endonuclease	NA	NA	NA	NA	NA
AVU01757.1|750426_751242_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
AVU01758.1|751333_751984_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
AVU04594.1|752077_752818_-	cytochrome c4	NA	NA	NA	NA	NA
AVU01759.1|753019_753643_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
AVU04595.1|753736_754432_-	VIT family protein	NA	NA	NA	NA	NA
AVU01760.1|754647_756012_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AVU01761.1|758434_758920_-	hypothetical protein	NA	NA	NA	NA	NA
AVU01762.1|759862_760783_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01763.1|760815_762315_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.1	3.6e-12
AVU01764.1|762311_763031_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVU01765.1|763169_764270_+	glycosyltransferase	NA	A0A142BZU7	Faustovirus	28.5	9.8e-15
AVU01766.1|765405_765681_+	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA	NA
AVU01767.1|765745_766855_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.4	3.8e-35
AVU01768.1|766923_767499_+	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA	NA
AVU01769.1|767558_768389_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AVU01770.1|768518_768728_+	DUF4386 domain-containing protein	NA	NA	NA	NA	NA
AVU01771.1|768779_769748_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
>prophage 6
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1025785	1149212	4723880	protease,transposase	Ralstonia_phage(18.52%)	101	NA	NA
AVU01980.1|1025785_1026844_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.2	1.8e-74
AVU01981.1|1027877_1028846_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	2.8e-98
AVU01982.1|1030748_1032122_-	MFS transporter	NA	NA	NA	NA	NA
AVU01983.1|1032220_1034260_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA	NA
AVU01984.1|1034467_1035490_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AVU04616.1|1035463_1035658_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01985.1|1035905_1037003_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01986.1|1037195_1037705_+	hypothetical protein	NA	NA	NA	NA	NA
AVU01987.1|1037724_1038585_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AVU01988.1|1038535_1038928_-	HNH endonuclease	NA	NA	NA	NA	NA
AVU01989.1|1038930_1040139_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	26.5	2.9e-20
AVU01990.1|1040229_1041327_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVU01991.1|1041330_1042191_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AVU01992.1|1042187_1043141_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AVU04617.1|1043148_1044183_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	2.0e-25
AVU01993.1|1044542_1045256_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04618.1|1045325_1046348_-	L-threonine 3-dehydrogenase	NA	NA	NA	NA	NA
AVU01994.1|1046863_1049197_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AVU01995.1|1051611_1053762_+	S46 family peptidase	NA	NA	NA	NA	NA
AVU01996.1|1053854_1054499_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AVU01997.1|1055469_1056768_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AVU01998.1|1056835_1057918_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AVU01999.1|1058132_1058873_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AVU02000.1|1058909_1060376_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	40.1	8.3e-86
AVU04619.1|1060514_1061339_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AVU02001.1|1062058_1062857_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU02002.1|1063319_1063739_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02003.1|1063918_1064662_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
AVU02004.1|1065289_1065832_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AVU02005.1|1065812_1066949_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AVU02006.1|1067153_1068680_-	exopolyphosphatase	NA	NA	NA	NA	NA
AVU02007.1|1068851_1070954_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AVU02008.1|1071057_1072401_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	33.8	5.0e-29
AVU02009.1|1072458_1073148_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	35.7	5.9e-34
AVU02010.1|1073322_1074969_-	peptidase	NA	NA	NA	NA	NA
AVU02011.1|1075118_1075427_+	glutaredoxin 3	NA	A0A2L0UZG6	Agrobacterium_phage	43.2	4.7e-07
AVU02012.1|1075423_1075819_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AVU02013.1|1076033_1077041_+	isocitrate dehydrogenase	NA	NA	NA	NA	NA
AVU02014.1|1077181_1077943_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02015.1|1079149_1080208_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	42.9	2.6e-73
AVU02016.1|1081524_1082493_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	9.6e-99
AVU02017.1|1084780_1086073_+	trigger factor	NA	NA	NA	NA	NA
AVU02018.1|1086165_1086792_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.4	1.0e-56
AVU02019.1|1086916_1088203_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.9	9.0e-137
AVU02020.1|1088346_1090818_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.4	9.9e-225
AVU02021.1|1091031_1091304_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	64.0	2.2e-21
AVU02022.1|1091918_1093886_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVU02023.1|1094584_1095763_-	lytic transglycosylase	NA	NA	NA	NA	NA
AVU02024.1|1095759_1096527_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AVU02025.1|1096539_1097196_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02026.1|1097223_1097676_+	ribonuclease HI	NA	A0A1Q2U2R0	Vibrio_phage	55.4	2.8e-40
AVU02027.1|1097684_1098419_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	40.6	1.1e-35
AVU02028.1|1098712_1100089_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	7.1e-63
AVU02029.1|1100373_1101078_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
AVU02030.1|1101823_1102201_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02031.1|1102670_1103624_-	DUF4102 domain-containing protein	NA	A0A077K814	Ralstonia_phage	62.1	1.9e-59
AVU02032.1|1104023_1104428_+	hypothetical protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	35.9	5.0e-17
AVU02033.1|1104638_1105688_-	lipopolysaccharide heptosyltransferase family protein	NA	NA	NA	NA	NA
AVU02034.1|1105708_1106458_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
AVU02035.1|1106457_1107207_+	MBL fold metallo-hydrolase	NA	A0A0A0RUN7	Bacillus_phage	26.0	4.2e-09
AVU02036.1|1107206_1108238_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AVU02037.1|1108234_1108615_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AVU04620.1|1108640_1109126_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AVU02038.1|1109134_1109380_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AVU02039.1|1109376_1109826_+	molybdopterin-converting factor chain 2	NA	NA	NA	NA	NA
AVU04622.1|1110271_1111383_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	57.3	2.4e-85
AVU04621.1|1111321_1112413_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.0	9.3e-42
AVU02040.1|1112410_1112902_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02041.1|1113272_1115369_+	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	40.7	3.1e-46
AVU02042.1|1115375_1115696_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AVU02043.1|1115793_1116387_+	recombination protein RecR	NA	NA	NA	NA	NA
AVU02044.1|1116488_1116839_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
AVU02045.1|1116958_1117492_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02046.1|1117491_1119441_-	DUF3488 domain-containing protein	NA	NA	NA	NA	NA
AVU02047.1|1119433_1120390_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AVU02048.1|1120395_1121349_-	MoxR family ATPase	NA	NA	NA	NA	NA
AVU02049.1|1121386_1123255_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04623.1|1123405_1125199_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02050.1|1125303_1125879_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AVU02051.1|1125991_1126501_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02052.1|1126598_1126793_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AVU02053.1|1126882_1127860_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AVU02054.1|1128091_1128532_+	MEKHLA domain-containing protein	NA	NA	NA	NA	NA
AVU02055.1|1128809_1129754_+	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AVU02056.1|1129815_1130559_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.5	5.2e-12
AVU02057.1|1130763_1131003_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	5.9e-10
AVU02058.1|1131144_1132380_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AVU02059.1|1132550_1133906_+	aminodeoxychorismate synthase, component I	NA	NA	NA	NA	NA
AVU02060.1|1133966_1135040_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AVU02061.1|1135036_1135996_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AVU02062.1|1135992_1136346_+	pilus assembly protein PilZ	NA	NA	NA	NA	NA
AVU02063.1|1136933_1138310_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.0	6.0e-62
AVU04624.1|1138404_1138863_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04625.1|1139066_1139393_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02064.1|1139629_1141405_-	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA	NA
AVU02065.1|1141373_1142270_+	methylisocitrate lyase	NA	NA	NA	NA	NA
AVU02066.1|1142345_1143500_+	2-methylcitrate synthase	NA	NA	NA	NA	NA
AVU02067.1|1143429_1143708_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02068.1|1143706_1146298_+	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA	NA
AVU02069.1|1146842_1147046_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02070.1|1148243_1149212_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.7	2.3e-100
>prophage 7
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1164997	1214057	4723880	protease,transposase	Pithovirus(12.5%)	33	NA	NA
AVU02081.1|1164997_1166125_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AVU02082.1|1166124_1166988_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AVU02083.1|1167282_1167468_+	DUF2065 domain-containing protein	NA	NA	NA	NA	NA
AVU02084.1|1167806_1169099_+	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	37.7	2.2e-74
AVU02085.1|1169424_1172097_+	aminopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	28.2	4.7e-79
AVU02086.1|1172582_1173614_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AVU02087.1|1175034_1176579_-	SAM-dependent methyltransferase	NA	A0A220A2U5	Liberibacter_phage	24.2	6.8e-14
AVU02088.1|1176625_1177624_-	abortive infection protein	NA	NA	NA	NA	NA
AVU04627.1|1177763_1181237_-	type I restriction-modification system endonuclease	NA	A0A1B1IW48	uncultured_Mediterranean_phage	23.2	5.1e-09
AVU04628.1|1181814_1182081_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02089.1|1182329_1183904_-	serine/threonine protein kinase	NA	NA	NA	NA	NA
AVU04629.1|1184071_1184323_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02090.1|1184310_1185087_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02091.1|1185414_1186170_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02092.1|1186230_1186860_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVU04630.1|1187075_1187855_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AVU02093.1|1188965_1189763_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU02094.1|1190221_1190647_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A1B3AYM0	Gordonia_phage	42.9	2.2e-07
AVU02095.1|1190656_1190878_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AVU02096.1|1191027_1191633_+	repressor LexA	NA	A0A1W6JNS2	Morganella_phage	39.2	3.3e-12
AVU04632.1|1191682_1192285_+	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA	NA
AVU02097.1|1192294_1193713_+	DNA polymerase Y family protein	NA	NA	NA	NA	NA
AVU04631.1|1193948_1197146_+	error-prone DNA polymerase	NA	A0A1B1PA77	Streptomyces_phage	25.0	5.4e-82
AVU04633.1|1197457_1198276_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
AVU02098.1|1198388_1199786_-|protease	serine protease	protease	NA	NA	NA	NA
AVU02099.1|1200213_1202184_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AVU02100.1|1203028_1203874_+	transporter	NA	NA	NA	NA	NA
AVU04634.1|1204162_1206283_+	S9 family peptidase	NA	NA	NA	NA	NA
AVU02101.1|1206559_1207021_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02102.1|1207152_1207878_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVU02103.1|1208695_1210837_+	outer protein P	NA	NA	NA	NA	NA
AVU02104.1|1210953_1213089_+	outer protein P	NA	NA	NA	NA	NA
AVU02105.1|1213251_1214057_-|transposase	IS5/IS1182 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	37.1	5.3e-10
>prophage 8
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1264174	1306876	4723880	plate,transposase	Leptospira_phage(38.46%)	28	NA	NA
AVU02144.1|1264174_1265233_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
AVU02145.1|1265304_1268124_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	28.4	1.0e-52
AVU04638.1|1268629_1269646_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.3	5.6e-49
AVU02146.1|1270753_1272130_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.8	3.0e-77
AVU02147.1|1272273_1273650_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	46.3	2.5e-60
AVU02148.1|1274314_1275283_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
AVU02149.1|1275438_1276497_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.2	2.4e-74
AVU02150.1|1277253_1277457_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02151.1|1277472_1278531_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.2	1.8e-74
AVU04639.1|1280085_1281462_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	4.6e-78
AVU02152.1|1281795_1282620_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02153.1|1282740_1283799_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
AVU02154.1|1283811_1284396_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04640.1|1286873_1287662_-	type VI secretion system protein ImpK	NA	NA	NA	NA	NA
AVU02155.1|1287661_1288996_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AVU02156.1|1289147_1289756_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AVU02157.1|1290141_1290630_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02158.1|1290676_1291177_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AVU02159.1|1291180_1292677_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AVU02160.1|1292818_1293316_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AVU02161.1|1293463_1293952_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AVU02162.1|1293954_1295790_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AVU02163.1|1295753_1296845_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AVU02164.1|1296930_1299663_+	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	29.6	7.1e-91
AVU02165.1|1299693_1300047_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02166.1|1300139_1302872_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	27.4	4.0e-41
AVU02167.1|1302846_1303719_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02168.1|1305755_1306876_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	3.0e-43
>prophage 9
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1332809	1358191	4723880	protease,transposase	Ralstonia_phage(33.33%)	21	NA	NA
AVU04643.1|1332809_1334186_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	46.3	1.1e-60
AVU02189.1|1334328_1334514_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02190.1|1334775_1336173_-|protease	serine protease	protease	NA	NA	NA	NA
AVU02191.1|1336614_1337997_-	amino acid permease	NA	NA	NA	NA	NA
AVU02192.1|1338189_1338954_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AVU02193.1|1339267_1340209_+	amino acid amidase	NA	NA	NA	NA	NA
AVU02194.1|1340964_1342353_+	amino acid permease	NA	NA	NA	NA	NA
AVU02195.1|1344302_1345757_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	41.0	9.0e-93
AVU02196.1|1345713_1346616_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02197.1|1346615_1347857_-	DNA (cytosine-5-)-methyltransferase	NA	M1PSQ0	Streptococcus_phage	34.7	3.2e-54
AVU02198.1|1348089_1349058_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	1.6e-98
AVU04644.1|1350178_1351195_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AVU04645.1|1351255_1352050_-	phospholipase	NA	NA	NA	NA	NA
AVU02199.1|1352209_1353571_-	magnesium transporter	NA	NA	NA	NA	NA
AVU02200.1|1353633_1353858_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02201.1|1353858_1355589_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	24.1	1.0e-10
AVU02202.1|1355647_1355917_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AVU02203.1|1355909_1356302_-	PTS fructose IIA subunit family protein	NA	NA	NA	NA	NA
AVU02204.1|1356378_1356693_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02205.1|1356695_1357664_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	5.6e-99
AVU02206.1|1357789_1358191_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1417609	1486595	4723880	tRNA,transposase	uncultured_Caudovirales_phage(20.0%)	47	NA	NA
AVU02269.1|1417609_1418578_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	9.6e-99
AVU02270.1|1418580_1418874_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02271.1|1418832_1419831_-	octaprenyl-diphosphate synthase	NA	NA	NA	NA	NA
AVU02272.1|1420106_1420640_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	60.9	1.9e-32
AVU02273.1|1420922_1422407_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.5	5.0e-14
AVU02274.1|1422700_1423408_+	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
AVU02275.1|1425919_1426597_+	HAD family hydrolase	NA	NA	NA	NA	NA
AVU02276.1|1426832_1427039_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02277.1|1427133_1427358_-	putative selenoprotein	NA	NA	NA	NA	NA
AVU02278.1|1427357_1429430_-	carbon starvation protein A	NA	NA	NA	NA	NA
AVU02279.1|1429661_1430519_+	pirin family protein	NA	NA	NA	NA	NA
AVU02280.1|1430605_1430977_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02281.1|1431380_1434197_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	28.6	4.7e-53
AVU02282.1|1434196_1435093_+	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
AVU02283.1|1435089_1435554_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AVU04649.1|1435577_1436057_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AVU04650.1|1436206_1436686_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AVU02284.1|1436772_1438509_+	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
AVU02285.1|1439289_1440666_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	48.1	9.9e-65
AVU02286.1|1441316_1441913_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AVU02287.1|1441912_1444144_+	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
AVU02288.1|1445098_1445560_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02289.1|1446875_1447523_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04651.1|1447799_1448513_-	deoxyribonuclease V	NA	NA	NA	NA	NA
AVU02290.1|1448616_1449366_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
AVU04652.1|1450807_1451929_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AVU02291.1|1451943_1452771_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA	NA
AVU02292.1|1452754_1454038_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AVU02293.1|1454064_1454580_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVU02294.1|1454590_1456747_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	61.5	1.4e-09
AVU04653.1|1456658_1456841_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02295.1|1463504_1464047_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVU04654.1|1464471_1465380_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AVU02296.1|1466910_1467723_-	peptidase C1	NA	NA	NA	NA	NA
AVU02297.1|1468668_1469280_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVU02298.1|1469398_1470283_+	nitrilase	NA	NA	NA	NA	NA
AVU02299.1|1470304_1471396_+	DUF3616 domain-containing protein	NA	NA	NA	NA	NA
AVU02300.1|1471464_1472868_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AVU02301.1|1472881_1473388_+	Fur family transcriptional regulator	NA	NA	NA	NA	NA
AVU02302.1|1473790_1474249_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AVU02303.1|1475026_1475230_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02304.1|1475393_1476537_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	56.9	1.2e-84
AVU02305.1|1476646_1477663_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	1.9e-49
AVU02306.1|1477948_1479325_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	53.7	8.9e-74
AVU04655.1|1479352_1480243_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02307.1|1480929_1481526_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02308.1|1485536_1486595_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
>prophage 11
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1496325	1621593	4723880	tRNA,protease,transposase	Ralstonia_phage(22.22%)	108	NA	NA
AVU02313.1|1496325_1497294_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	5.6e-99
AVU02314.1|1497581_1498127_-	cysteine methyltransferase	NA	A0A1S5V092	Saudi_moumouvirus	50.6	1.6e-13
AVU04656.1|1499075_1500338_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02315.1|1500414_1500669_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02316.1|1500743_1500938_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02317.1|1501070_1501604_+	DUF4019 domain-containing protein	NA	NA	NA	NA	NA
AVU02318.1|1501629_1502031_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02319.1|1502120_1502363_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
AVU02320.1|1502399_1503047_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02321.1|1503075_1503573_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AVU02322.1|1503744_1505649_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.2	3.8e-59
AVU02323.1|1505912_1508318_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.3	1.6e-14
AVU02324.1|1508453_1509176_+	23S rRNA pseudouridine synthase F	NA	NA	NA	NA	NA
AVU02325.1|1509363_1510311_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVU02326.1|1510720_1511554_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AVU02327.1|1512126_1512627_+	ribonuclease E inhibitor RraA	NA	NA	NA	NA	NA
AVU02328.1|1512568_1514245_+	serine hydrolase	NA	NA	NA	NA	NA
AVU02329.1|1514391_1515648_+	cation/H(+) antiporter	NA	NA	NA	NA	NA
AVU02330.1|1515715_1516909_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.9	3.1e-22
AVU02331.1|1516905_1517595_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	29.2	1.2e-07
AVU02332.1|1517700_1519170_+	outer membrane channel protein	NA	NA	NA	NA	NA
AVU02333.1|1519189_1520026_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AVU02334.1|1520051_1521155_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVU02335.1|1521151_1524208_+	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
AVU02336.1|1524273_1524870_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
AVU02337.1|1525037_1526870_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.9	6.2e-30
AVU02338.1|1527191_1528997_-	DUF885 domain-containing protein	NA	NA	NA	NA	NA
AVU02339.1|1529229_1529586_+	aldehyde-activating protein	NA	NA	NA	NA	NA
AVU02340.1|1529582_1530392_+	DUF4349 domain-containing protein	NA	NA	NA	NA	NA
AVU02341.1|1530454_1531423_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
AVU02342.1|1531746_1532040_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04657.1|1532118_1532532_-	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
AVU02343.1|1533223_1534210_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVU02344.1|1534260_1534494_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
AVU02345.1|1534967_1535261_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02346.1|1536153_1536603_-	DUF4442 domain-containing protein	NA	NA	NA	NA	NA
AVU02347.1|1536868_1537726_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.8	1.0e-11
AVU02348.1|1537930_1538542_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
AVU02349.1|1538640_1541283_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	40.0	4.7e-172
AVU02350.1|1541796_1542432_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02351.1|1542454_1543483_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AVU02352.1|1543479_1544379_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AVU02353.1|1544435_1544852_+	ribosome silencing factor	NA	NA	NA	NA	NA
AVU02354.1|1544863_1545979_+	J domain-containing protein	NA	NA	NA	NA	NA
AVU02355.1|1547068_1547539_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AVU02356.1|1547976_1548651_-	energy transducer TonB	NA	NA	NA	NA	NA
AVU02357.1|1548961_1552072_-	Oar protein	NA	NA	NA	NA	NA
AVU02358.1|1552538_1553273_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
AVU02359.1|1553411_1553984_+	Maf-like protein	NA	NA	NA	NA	NA
AVU02360.1|1553983_1555483_+	ribonuclease G	NA	NA	NA	NA	NA
AVU02361.1|1555623_1559544_+	TIGR02099 family protein	NA	NA	NA	NA	NA
AVU04658.1|1559549_1560302_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02362.1|1560400_1561846_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AVU02363.1|1562102_1562684_-	DUF615 domain-containing protein	NA	NA	NA	NA	NA
AVU02364.1|1562829_1564197_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AVU04659.1|1564271_1564676_+	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
AVU02365.1|1564727_1565189_+	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
AVU02366.1|1565258_1566356_-|protease	protease	protease	NA	NA	NA	NA
AVU02367.1|1566762_1567560_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU02368.1|1567672_1568548_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AVU02369.1|1568549_1568810_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AVU02370.1|1568841_1570146_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AVU02371.1|1570179_1571886_-	alkaline phosphatase	NA	NA	NA	NA	NA
AVU02372.1|1572028_1573369_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AVU02373.1|1573378_1574215_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVU02374.1|1574461_1574953_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AVU02375.1|1575160_1575910_-	NlpC/P60 family protein	NA	A0A0K2SUC1	Clostridium_phage	38.5	1.2e-19
AVU02376.1|1576019_1576556_-	NlpC/P60 family protein	NA	A0A1V0DZX6	Clostridioides_phage	40.5	3.2e-19
AVU02377.1|1576666_1577146_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVU02378.1|1577374_1578619_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
AVU02379.1|1578626_1579877_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AVU02380.1|1579873_1581244_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.8	2.4e-34
AVU02381.1|1582801_1583098_+	cysteine methyltransferase	NA	NA	NA	NA	NA
AVU02382.1|1583138_1583837_+	DUF1751 domain-containing protein	NA	NA	NA	NA	NA
AVU02383.1|1584087_1585056_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	9.6e-99
AVU02384.1|1585639_1586665_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	1.9e-49
AVU02385.1|1587717_1588206_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02386.1|1588174_1589276_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	2.2e-43
AVU02387.1|1590267_1592283_-	M13 family peptidase	NA	NA	NA	NA	NA
AVU04660.1|1592952_1593969_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	3.3e-49
AVU02388.1|1594365_1595334_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU02389.1|1595561_1595987_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02390.1|1596352_1597204_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AVU02391.1|1597299_1597869_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	74.9	4.5e-72
AVU04661.1|1597903_1598089_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02392.1|1598234_1598663_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02393.1|1598665_1599634_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU02394.1|1599793_1599961_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02395.1|1599988_1600423_-	HIT family protein	NA	NA	NA	NA	NA
AVU02396.1|1600419_1601082_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AVU02397.1|1601262_1602627_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVU02398.1|1602689_1603658_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	3.3e-99
AVU04662.1|1604305_1604818_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AVU02399.1|1604976_1606096_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.2	2.4e-40
AVU04663.1|1606300_1607317_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	2.5e-49
AVU02400.1|1607393_1607972_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02401.1|1607991_1609497_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	45.4	5.5e-85
AVU04664.1|1609686_1609872_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02402.1|1609791_1611375_+	lytic transglycosylase	NA	I1VXB7	Halocynthia_phage	30.6	4.7e-10
AVU02403.1|1611924_1612773_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
AVU02404.1|1612769_1613420_-	SCO family protein	NA	NA	NA	NA	NA
AVU02405.1|1613500_1614427_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AVU02406.1|1614437_1615541_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	40.7	1.4e-74
AVU02407.1|1615533_1616607_+	D-glycerate dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	24.1	1.2e-14
AVU02408.1|1616690_1617716_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AVU04665.1|1618176_1620243_+	ferrous iron transporter B	NA	NA	NA	NA	NA
AVU02409.1|1620239_1620647_+	VOC family protein	NA	NA	NA	NA	NA
AVU02410.1|1620819_1621593_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
>prophage 12
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1699788	1761829	4723880	tRNA,terminase,integrase,transposase	Xylella_phage(22.73%)	66	1710224:1710241	1775687:1775704
AVU02483.1|1699788_1701144_+	DNA (cytosine-5-)-methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	37.0	3.1e-55
AVU02484.1|1701314_1701506_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02485.1|1701705_1702146_+	hypothetical protein	NA	A0A0H5AUD0	Pseudomonas_phage	45.6	1.3e-26
AVU02486.1|1702142_1703207_+	site-specific DNA-methyltransferase	NA	A0A060D598	Salmonella_phage	46.7	7.9e-78
AVU02487.1|1703206_1703392_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02488.1|1703391_1703835_+	HNH endonuclease	NA	NA	NA	NA	NA
AVU02489.1|1703831_1704152_+	DUF1364 domain-containing protein	NA	Q8W6N7	Burkholderia_virus	47.9	7.2e-11
AVU02490.1|1704444_1704645_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02491.1|1704637_1705024_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02492.1|1705020_1705260_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02493.1|1705256_1705730_+	hypothetical protein	NA	R9ZZU8	Cellulophaga_phage	47.5	8.1e-27
AVU02494.1|1705726_1705960_+	DUF3310 domain-containing protein	NA	NA	NA	NA	NA
AVU02495.1|1705956_1706406_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02496.1|1706597_1707080_+	hypothetical protein	NA	A0A0M3LSH2	Mannheimia_phage	54.3	4.1e-42
AVU02497.1|1707079_1707406_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02498.1|1707402_1707618_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02499.1|1707663_1708125_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02500.1|1708545_1708935_+	hypothetical protein	NA	X2CY93	Brucella_phage	51.4	1.2e-23
AVU02501.1|1708906_1710232_+|terminase	PBSX family phage terminase large subunit	terminase	F8TUR5	EBPR_podovirus	67.4	9.2e-169
AVU02502.1|1710222_1712295_+	hypothetical protein	NA	C8CLI5	Xylella_phage	44.3	4.5e-138
1710224:1710241	attL	TGGGCCTAATGCGCGATG	NA	NA	NA	NA
AVU02503.1|1712302_1713208_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02504.1|1713223_1714432_+	hypothetical protein	NA	A0A1B1IR95	uncultured_Mediterranean_phage	33.0	1.6e-47
AVU02505.1|1714443_1714656_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02506.1|1714665_1714977_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02507.1|1715152_1715443_+	hypothetical protein	NA	C8CLI8	Xylella_phage	49.5	1.6e-17
AVU02508.1|1715442_1717758_+	hypothetical protein	NA	C8CLI9	Xylella_phage	47.1	2.1e-120
AVU02509.1|1717754_1717976_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02510.1|1718056_1718440_+	hypothetical protein	NA	I3PUW8	Vibrio_phage	40.4	1.6e-20
AVU02511.1|1718436_1719084_+	hypothetical protein	NA	C8CLJ1	Xylella_phage	48.0	3.2e-26
AVU02512.1|1719083_1720535_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02513.1|1720537_1722628_+	hypothetical protein	NA	C8CLJ3	Xylella_phage	32.0	1.7e-07
AVU02514.1|1722587_1722809_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02515.1|1722895_1723669_+	hypothetical protein	NA	A0A2I7RHI9	Vibrio_phage	42.7	1.2e-06
AVU02516.1|1723908_1724883_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02517.1|1724885_1725509_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02518.1|1725508_1726237_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02519.1|1726324_1726633_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02520.1|1728564_1729293_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02521.1|1729422_1730517_-	acyltransferase	NA	NA	NA	NA	NA
AVU02522.1|1730977_1732645_-	urocanate hydratase	NA	NA	NA	NA	NA
AVU02523.1|1732661_1733519_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AVU02524.1|1733703_1735245_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	42.8	2.7e-79
AVU02525.1|1735258_1736464_-	imidazolonepropionase	NA	NA	NA	NA	NA
AVU02526.1|1736524_1737895_+	formimidoylglutamate deiminase	NA	NA	NA	NA	NA
AVU02527.1|1738248_1738953_+	histidine utilization repressor	NA	NA	NA	NA	NA
AVU02528.1|1739109_1740120_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02529.1|1740686_1741250_-	poly(hydroxyalcanoate) granule associated protein	NA	NA	NA	NA	NA
AVU02530.1|1741411_1741687_-	polyhydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AVU04670.1|1741927_1742737_+	FHA domain-containing protein	NA	NA	NA	NA	NA
AVU02531.1|1742678_1743335_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AVU02532.1|1743636_1744605_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AVU02533.1|1744779_1745865_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	43.6	1.7e-75
AVU02534.1|1745947_1747156_+	prephenate dehydratase	NA	NA	NA	NA	NA
AVU02535.1|1747277_1748591_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AVU02536.1|1748632_1749430_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU02537.1|1749607_1750727_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	3.0e-43
AVU04671.1|1751147_1751615_-	energy transducer TonB	NA	NA	NA	NA	NA
AVU02538.1|1752045_1753014_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.7	3.0e-100
AVU02539.1|1753135_1753903_-	energy transducer TonB	NA	NA	NA	NA	NA
AVU02540.1|1753909_1755301_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	49.6	1.0e-93
AVU02541.1|1755761_1756346_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
AVU02542.1|1756445_1757462_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVU04672.1|1758084_1759503_+|integrase	integrase	integrase	NA	NA	NA	NA
AVU02543.1|1759598_1759841_+	PbsX family transcriptional regulator	NA	NA	NA	NA	NA
AVU02544.1|1759834_1760176_+	toxin MazF	NA	NA	NA	NA	NA
AVU02545.1|1760710_1761829_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.6	7.3e-42
1775687:1775704	attR	CATCGCGCATTAGGCCCA	NA	NA	NA	NA
>prophage 13
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1841376	1851264	4723880	tRNA	Micromonas_sp._RCC1109_virus(16.67%)	9	NA	NA
AVU04689.1|1841376_1843053_+	2-polyprenylphenol 6-hydroxylase	NA	E5EQ95	Micromonas_sp._RCC1109_virus	27.3	2.1e-37
AVU02603.1|1843141_1843783_+	LexA repressor 2	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
AVU02604.1|1843955_1844990_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	61.0	1.6e-112
AVU02605.1|1845058_1845280_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04690.1|1845291_1845780_+	recombination regulator RecX	NA	NA	NA	NA	NA
AVU02606.1|1845881_1848530_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.8	2.4e-83
AVU02607.1|1848669_1848882_+	carbon storage regulator	NA	J7I430	Pseudomonas_phage	76.5	1.3e-13
AVU02608.1|1849355_1849592_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02609.1|1850772_1851264_+	lysozyme	NA	D5LH07	Escherichia_phage	67.1	1.7e-56
>prophage 14
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	1959789	2039087	4723880	tRNA,transposase	uncultured_Caudovirales_phage(42.11%)	46	NA	NA
AVU02700.1|1959789_1960910_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.0	1.5e-42
AVU02701.1|1960916_1961225_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02702.1|1961468_1962671_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AVU02703.1|1962667_1963387_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AVU02704.1|1963818_1964535_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
AVU02705.1|1964774_1965899_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	31.9	4.6e-44
AVU02706.1|1965898_1966342_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02707.1|1966350_1969593_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AVU02708.1|1969589_1970066_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AVU02709.1|1970082_1971003_+	phosphoglycerate mutase	NA	NA	NA	NA	NA
AVU02710.1|1970999_1972739_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.0	4.6e-43
AVU04701.1|1974193_1975408_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02711.1|1975567_1976515_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
AVU02712.1|1976768_1977893_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.7	9.4e-05
AVU02713.1|1978098_1979616_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	38.5	8.6e-86
AVU02714.1|1979757_1980894_+	two-component system response regulator	NA	NA	NA	NA	NA
AVU02715.1|1980895_1981234_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02716.1|1981258_1983436_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	33.1	1.3e-47
AVU02717.1|1983447_1984317_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AVU02718.1|1984493_1986176_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.2	2.1e-32
AVU02719.1|1986825_1989594_-	aconitate hydratase AcnA	NA	NA	NA	NA	NA
AVU02720.1|1989741_1989990_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AVU02721.1|1989986_1990397_+	PIN domain-containing protein	NA	NA	NA	NA	NA
AVU02722.1|1990462_1993054_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
AVU02723.1|1993407_1994223_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVU04702.1|1994878_1997122_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
AVU02724.1|1997230_1998307_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AVU02725.1|1998303_1998900_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AVU02726.1|1998896_1999763_-	chemotaxis protein CheR	NA	NA	NA	NA	NA
AVU02727.1|2000008_2002399_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	58.3	3.9e-08
AVU04703.1|2002477_2002822_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02728.1|2003176_2003659_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVU02729.1|2003794_2004592_-	flagellar brake protein	NA	NA	NA	NA	NA
AVU02730.1|2005633_2007895_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.5	1.3e-10
AVU02731.1|2008306_2010568_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	2.5e-12
AVU02732.1|2011158_2013633_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	47.4	1.9e-10
AVU02733.1|2013678_2014737_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	1.1e-74
AVU02734.1|2017737_2019981_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.8	3.4e-14
AVU02735.1|2020490_2021867_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU02736.1|2022148_2024362_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.2	1.9e-09
AVU02737.1|2024559_2026929_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	61.7	2.7e-09
AVU02738.1|2026942_2027704_-	transporter	NA	NA	NA	NA	NA
AVU02739.1|2033211_2035473_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	61.4	2.8e-08
AVU04704.1|2035591_2036608_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	2.5e-49
AVU02740.1|2036584_2037371_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU02741.1|2038028_2039087_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
>prophage 15
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	2185099	2390281	4723880	capsid,coat,plate,transposase	Xanthomonas_phage(26.92%)	95	NA	NA
AVU04714.1|2185099_2186116_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	3.3e-49
AVU02855.1|2186453_2187209_-	DUF1264 domain-containing protein	NA	NA	NA	NA	NA
AVU04715.1|2187335_2187725_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02856.1|2187663_2188041_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02857.1|2188246_2189500_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AVU02858.1|2189537_2190107_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
AVU02859.1|2190090_2190453_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02860.1|2192827_2193805_-	siroheme synthase	NA	NA	NA	NA	NA
AVU02861.1|2195126_2195315_+	nitrate transport ATP-binding protein	NA	NA	NA	NA	NA
AVU02862.1|2195327_2195603_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02863.1|2196247_2196505_+	stress-induced protein	NA	NA	NA	NA	NA
AVU02864.1|2196730_2197699_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.3e-98
AVU02865.1|2198340_2198826_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
AVU02866.1|2198932_2199853_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AVU02867.1|2201042_2202854_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AVU02868.1|2208153_2209530_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU02869.1|2214824_2215436_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVU04716.1|2215432_2216455_-	sensor histidine kinase	NA	NA	NA	NA	NA
AVU02870.1|2216573_2218058_-	histidine kinase	NA	NA	NA	NA	NA
AVU02871.1|2218054_2221147_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA	NA
AVU02872.1|2221139_2222255_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVU02873.1|2222744_2225480_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AVU04717.1|2227200_2227563_+	type VI secretion protein	NA	NA	NA	NA	NA
AVU02874.1|2227619_2231924_+	avirulence protein	NA	NA	NA	NA	NA
AVU02875.1|2232055_2235139_+	avirulence protein	NA	NA	NA	NA	NA
AVU02876.1|2235270_2239572_+	avirulence protein	NA	NA	NA	NA	NA
AVU04718.1|2241503_2242397_+	transcriptional activator feaR	NA	NA	NA	NA	NA
AVU02877.1|2242651_2244304_-	hypothetical protein	NA	A0A2K9L3I8	Tupanvirus	27.5	9.1e-41
AVU02878.1|2244430_2245105_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02879.1|2244954_2245356_-	hypothetical protein	NA	A0A0N9SHJ4	Paenibacillus_phage	37.1	2.6e-10
AVU02880.1|2245408_2249719_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	25.7	4.9e-54
AVU02881.1|2249797_2252437_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.9	4.1e-67
AVU02882.1|2252364_2253072_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02883.1|2253302_2272784_-	non-ribosomal peptide synthase/polyketide synthase	NA	A0A2K9KZV5	Tupanvirus	25.1	9.2e-132
AVU02884.1|2272789_2295202_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	25.0	1.1e-133
AVU02885.1|2295198_2309685_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.9	1.4e-124
AVU02886.1|2309815_2310061_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02887.1|2310216_2311311_+	type III polyketide synthase	NA	NA	NA	NA	NA
AVU02888.1|2311350_2312094_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AVU02889.1|2312090_2313368_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AVU02890.1|2313355_2314711_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AVU02891.1|2314707_2315505_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AVU02892.1|2315581_2317288_+	cyclic peptide export ABC transporter	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	22.4	2.0e-06
AVU02893.1|2317386_2317605_+	antibiotic synthesis protein MbtH	NA	NA	NA	NA	NA
AVU04719.1|2317987_2319571_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AVU02894.1|2322014_2322413_-	hypothetical protein	NA	A0A1D6ZIU9	Xanthomonas_phage	46.8	6.2e-20
AVU02895.1|2322538_2322763_+	hypothetical protein	NA	A0A1W6DXK4	Xanthomonas_phage	88.4	2.3e-24
AVU02896.1|2322925_2323105_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04720.1|2323420_2324461_+	replication initiation protein	NA	A0A077JDC0	Xanthomonas_phage	98.0	9.4e-201
AVU02897.1|2324457_2324754_+	DNA-binding protein	NA	A0A1W6DXU2	Xanthomonas_phage	99.0	4.7e-49
AVU02898.1|2324785_2324917_+|coat	coat protein	coat	NA	NA	NA	NA
AVU02899.1|2324892_2325009_+|coat	Phi-Lf prophage-derived minor coat protein	coat	NA	NA	NA	NA
AVU02900.1|2325033_2325162_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AVU04721.1|2325763_2326042_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02901.1|2326035_2326275_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	93.7	1.6e-34
AVU02902.1|2326285_2326606_+|coat	phage coat protein	coat	Q4LAU3	Stenotrophomonas_phage	46.2	1.5e-21
AVU02903.1|2326607_2327930_+	hypothetical protein	NA	Q4LAU4	Stenotrophomonas_phage	55.9	1.5e-131
AVU04722.1|2328047_2328296_+	hypothetical protein	NA	NA	NA	NA	NA
AVU02904.1|2328355_2328667_-	chloride channel protein	NA	A0A1W6DXV7	Xanthomonas_phage	98.1	5.1e-54
AVU02905.1|2328732_2329116_-	hypothetical protein	NA	A0A077JDD0	Xanthomonas_phage	86.6	8.5e-59
AVU02906.1|2330748_2333874_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AVU02907.1|2333925_2335038_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVU02908.1|2335161_2335740_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVU02909.1|2338306_2340394_+	type III effector	NA	NA	NA	NA	NA
AVU02910.1|2342331_2345421_+	histidine kinase	NA	NA	NA	NA	NA
AVU02911.1|2347398_2347704_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02912.1|2347705_2348413_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVU02913.1|2348409_2349402_+	cytochrome-c peroxidase	NA	NA	NA	NA	NA
AVU02914.1|2349398_2351858_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AVU02915.1|2351971_2352952_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVU02916.1|2352960_2353989_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AVU02917.1|2354161_2354488_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02918.1|2354484_2357388_-	serine/threonine protein kinase	NA	A0A2R8FF19	Brazilian_cedratvirus	25.0	1.9e-09
AVU02919.1|2357384_2358107_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
AVU02920.1|2358103_2358751_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
AVU02921.1|2358747_2362206_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
AVU02922.1|2362209_2363526_-	type VI secretion system protein TssL	NA	NA	NA	NA	NA
AVU02923.1|2363527_2364865_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AVU02924.1|2364861_2366250_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AVU02925.1|2366246_2366786_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02926.1|2366794_2368732_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.6	7.7e-39
AVU02927.1|2368995_2369457_-	hypothetical protein	NA	NA	NA	NA	NA
AVU02928.1|2369559_2369763_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04723.1|2371731_2372748_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	2.5e-49
AVU02929.1|2373424_2374393_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	5.6e-99
AVU02930.1|2374834_2377606_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.3	1.2e-77
AVU02931.1|2377638_2378649_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AVU02932.1|2378612_2380490_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AVU02933.1|2380493_2380997_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AVU02934.1|2380984_2381818_-	ImpE protein	NA	NA	NA	NA	NA
AVU02935.1|2381853_2382357_-	Hcp1 family type VI secretion system effector	NA	NA	NA	NA	NA
AVU02936.1|2382456_2383971_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AVU04724.1|2383963_2384470_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AVU02937.1|2384814_2385612_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU02938.1|2389312_2390281_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	2.1e-98
>prophage 16
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	2610993	2780745	4723880	protease,transposase,tRNA	Ralstonia_phage(19.35%)	112	NA	NA
AVU03110.1|2610993_2612061_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVU03111.1|2612205_2613543_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	35.8	6.5e-37
AVU03112.1|2613838_2615101_-	virulence factor	NA	NA	NA	NA	NA
AVU03113.1|2615570_2616539_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	9.6e-99
AVU03114.1|2616541_2616757_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03115.1|2616919_2618755_-	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	33.1	9.5e-23
AVU03116.1|2619026_2620118_+	ribonuclease D	NA	NA	NA	NA	NA
AVU03117.1|2622167_2622332_-	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
AVU03118.1|2622556_2622958_+	histone-like nucleoid-structuring protein	NA	NA	NA	NA	NA
AVU03119.1|2623231_2623465_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03120.1|2623768_2624854_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
AVU03121.1|2624896_2625406_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVU03122.1|2625417_2627076_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	26.6	2.7e-08
AVU03123.1|2630136_2630553_+	DUF3301 domain-containing protein	NA	NA	NA	NA	NA
AVU03124.1|2631124_2631565_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	46.0	7.1e-25
AVU03125.1|2631643_2632279_-	stringent starvation protein A	NA	NA	NA	NA	NA
AVU04741.1|2632675_2633419_-	cytochrome c1	NA	NA	NA	NA	NA
AVU03126.1|2633426_2634686_-	cytochrome b	NA	NA	NA	NA	NA
AVU03127.1|2634685_2635330_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AVU03128.1|2635857_2636844_-	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	56.0	1.3e-29
AVU03129.1|2638196_2638490_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AVU03130.1|2638515_2638746_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03131.1|2638784_2640239_+|tRNA	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	tRNA	NA	NA	NA	NA
AVU03132.1|2640662_2641649_+	PhoH family protein	NA	A0A1B2ICF6	Erwinia_phage	47.7	4.8e-45
AVU03133.1|2642079_2642724_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03134.1|2642778_2643264_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AVU03135.1|2643263_2643782_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03136.1|2643876_2644755_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVU03137.1|2644751_2646032_+	DUF4105 domain-containing protein	NA	NA	NA	NA	NA
AVU03138.1|2646047_2647049_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
AVU04742.1|2647200_2648565_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AVU03139.1|2649039_2649888_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
AVU03140.1|2649884_2650796_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
AVU03141.1|2650924_2652058_-	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.3	7.4e-26
AVU03142.1|2652203_2653715_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03143.1|2653701_2655288_-	MFS transporter	NA	NA	NA	NA	NA
AVU03144.1|2655284_2656487_-	HlyD family secretion protein	NA	NA	NA	NA	NA
AVU03145.1|2657335_2658304_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	3.6e-98
AVU03146.1|2660923_2662309_-	glutamine synthetase	NA	NA	NA	NA	NA
AVU04743.1|2662955_2664335_+	glutamine synthetase	NA	NA	NA	NA	NA
AVU03147.1|2664334_2665651_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AVU03148.1|2665787_2667038_+	diguanylate cyclase response regulator	NA	A0A127AWB9	Bacillus_phage	35.9	4.8e-18
AVU03149.1|2667343_2668624_-	MFS transporter	NA	NA	NA	NA	NA
AVU03150.1|2668925_2669234_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03151.1|2669193_2671542_-	CbbBc protein	NA	NA	NA	NA	NA
AVU03152.1|2671538_2672384_-	sulfurtransferase FdhD	NA	NA	NA	NA	NA
AVU03153.1|2672390_2674070_-	MFS transporter	NA	NA	NA	NA	NA
AVU03154.1|2674598_2675951_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AVU03155.1|2676011_2679143_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03156.1|2679307_2680162_+	plasmid replication/partition related protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	38.7	3.2e-13
AVU03157.1|2680332_2681637_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVU03158.1|2681778_2685873_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	28.4	5.0e-56
AVU03159.1|2685906_2686893_+	HD domain-containing protein	NA	W8CYM9	Bacillus_phage	26.8	4.8e-05
AVU03160.1|2687077_2688046_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
AVU03161.1|2688838_2690182_+	MFS transporter	NA	NA	NA	NA	NA
AVU03162.1|2691729_2691888_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03163.1|2692279_2692537_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04744.1|2692547_2693915_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	3.1e-79
AVU03164.1|2694105_2694522_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03165.1|2694632_2695601_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU03166.1|2695898_2697000_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	2.2e-43
AVU03167.1|2697231_2702241_-	glutamate dehydrogenase	NA	NA	NA	NA	NA
AVU03168.1|2702518_2703178_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVU03169.1|2703192_2704500_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVU03170.1|2704512_2707683_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AVU03171.1|2710374_2711370_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AVU03172.1|2711530_2714047_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	28.5	6.3e-09
AVU03173.1|2714043_2715000_+	1-phosphofructokinase	NA	NA	NA	NA	NA
AVU03174.1|2715158_2716901_+	PTS fructose transporter subunit EIIBC	NA	NA	NA	NA	NA
AVU04745.1|2717219_2718356_+	carbohydrate porin	NA	NA	NA	NA	NA
AVU03175.1|2718750_2721513_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	27.4	3.6e-42
AVU03176.1|2721783_2722509_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03177.1|2722520_2725505_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03178.1|2725501_2726245_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03179.1|2726861_2728238_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.7	9.2e-63
AVU03180.1|2728577_2729679_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	2.2e-43
AVU03181.1|2729887_2730856_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	29.9	6.8e-28
AVU03182.1|2730969_2732814_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AVU03183.1|2733004_2733358_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
AVU03184.1|2733489_2734635_-|tRNA	tRNA-guanine(34) transglycosylase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.2	2.2e-86
AVU04746.1|2734704_2735775_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AVU03185.1|2735940_2736372_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AVU03186.1|2736494_2737991_+	lysine 6-aminotransferase	NA	NA	NA	NA	NA
AVU03187.1|2738339_2739047_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03188.1|2739182_2739632_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03189.1|2739914_2741036_-	phytase	NA	NA	NA	NA	NA
AVU03190.1|2744818_2745451_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AVU03191.1|2745804_2747598_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AVU03192.1|2747594_2747879_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	57.0	1.4e-18
AVU03193.1|2747869_2748052_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04747.1|2748110_2748596_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03194.1|2748654_2749161_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	41.8	2.1e-25
AVU03195.1|2749157_2749778_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
AVU03196.1|2750017_2751922_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.7	3.0e-112
AVU03197.1|2752534_2753911_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	46.6	5.1e-61
AVU03198.1|2755889_2756210_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03199.1|2756334_2758680_-	S9 family peptidase	NA	NA	NA	NA	NA
AVU03200.1|2759002_2760589_-	glycosyl hydrolase family 43	NA	NA	NA	NA	NA
AVU03201.1|2760585_2764944_-	carbohydrate-binding protein	NA	NA	NA	NA	NA
AVU03202.1|2765182_2768020_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	25.7	1.3e-47
AVU03203.1|2768498_2770856_-	Tat pathway signal protein	NA	NA	NA	NA	NA
AVU03204.1|2771126_2771345_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03205.1|2771319_2772891_+	peptidase S53	NA	A0A1V0SLL0	Klosneuvirus	37.6	4.7e-71
AVU03206.1|2773098_2773395_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03207.1|2773391_2773736_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03208.1|2773739_2774330_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03209.1|2774305_2774611_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03210.1|2774577_2774793_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03211.1|2774835_2775123_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03212.1|2777490_2778459_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU04748.1|2778621_2779642_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.5	8.8e-95
AVU03213.1|2779794_2780745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	2925675	2988434	4723880	transposase	Bacillus_phage(18.75%)	46	NA	NA
AVU03331.1|2925675_2926644_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU03332.1|2928148_2929051_-	CAP domain-containing protein	NA	NA	NA	NA	NA
AVU03333.1|2929248_2930616_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.7	4.8e-112
AVU03334.1|2930872_2931385_+	DUF3060 domain-containing protein	NA	NA	NA	NA	NA
AVU03335.1|2931314_2931554_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AVU03336.1|2931896_2933396_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AVU03337.1|2933392_2934325_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVU03338.1|2934505_2937334_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AVU03339.1|2937376_2938579_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AVU03340.1|2938820_2940257_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.8	3.7e-38
AVU03341.1|2940455_2941049_+	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	27.5	1.6e-11
AVU04758.1|2941313_2941907_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	41.2	8.1e-16
AVU03342.1|2941903_2943673_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.5	5.2e-58
AVU03343.1|2943915_2944770_+	RND transporter	NA	NA	NA	NA	NA
AVU03344.1|2944766_2946170_+	TolC family protein	NA	NA	NA	NA	NA
AVU04759.1|2946521_2946716_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03345.1|2946995_2948117_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AVU03346.1|2948113_2949031_-	pyridoxal kinase	NA	NA	NA	NA	NA
AVU03347.1|2949558_2950689_-	molecular chaperone DnaJ	NA	Q8QNB4	Ectocarpus_siliculosus_virus	30.3	1.8e-24
AVU03348.1|2950848_2952774_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.6	2.2e-147
AVU03349.1|2952915_2953434_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AVU03350.1|2953534_2954587_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
AVU03351.1|2954703_2956368_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AVU03352.1|2956810_2957236_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
AVU03353.1|2957325_2957721_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AVU03354.1|2958067_2958343_-	RnfH family protein	NA	NA	NA	NA	NA
AVU03355.1|2958356_2958788_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AVU03356.1|2958848_2959352_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	41.9	5.8e-23
AVU03357.1|2959495_2961943_-	serine peptidase	NA	A0A218KC60	Bacillus_phage	26.7	2.6e-15
AVU03358.1|2963692_2964661_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.7	5.1e-100
AVU03359.1|2964883_2966260_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	48.1	9.9e-65
AVU04760.1|2967028_2967721_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04761.1|2968643_2969745_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	2.2e-43
AVU03360.1|2970724_2970973_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03361.1|2971249_2972404_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
AVU03362.1|2972403_2973726_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA	NA
AVU04762.1|2973752_2974793_+	dihydrorhizobitoxine desaturase	NA	NA	NA	NA	NA
AVU04763.1|2974810_2975671_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
AVU03363.1|2975706_2976306_+	LysE family translocator	NA	NA	NA	NA	NA
AVU03364.1|2976372_2977308_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
AVU03365.1|2977373_2978726_+	glutamine synthetase	NA	NA	NA	NA	NA
AVU03366.1|2979274_2980651_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.1	1.9e-76
AVU03367.1|2983611_2984586_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.0	2.6e-19
AVU03368.1|2986448_2987174_-	OmpA family lipoprotein	NA	G3M9Z0	Bacillus_virus	33.9	1.8e-09
AVU04764.1|2987183_2987363_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03369.1|2987636_2988434_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	3001246	3070531	4723880	protease,transposase,coat,tRNA	Ralstonia_phage(20.0%)	54	NA	NA
AVU03378.1|3001246_3002077_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AVU03379.1|3002149_3002578_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03380.1|3002709_3003189_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AVU03381.1|3003439_3003655_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	59.7	6.5e-16
AVU03382.1|3003621_3003855_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03383.1|3003882_3004368_+	DUF456 domain-containing protein	NA	NA	NA	NA	NA
AVU03384.1|3006986_3009218_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	59.7	1.5e-09
AVU03385.1|3009361_3010738_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	4.6e-78
AVU03386.1|3011856_3012825_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	5.6e-99
AVU03387.1|3013146_3014196_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03388.1|3014392_3015361_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	1.5e-99
AVU03389.1|3016451_3017087_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AVU03390.1|3017222_3018740_-	fumarate hydratase	NA	NA	NA	NA	NA
AVU03391.1|3018779_3019040_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03392.1|3019074_3020955_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	38.9	5.2e-24
AVU03393.1|3021143_3021923_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AVU03394.1|3022004_3022490_-	glutathione peroxidase	NA	A0A1S7DM81	Molluscum_contagiosum_virus	36.2	2.8e-14
AVU03395.1|3022467_3022716_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04765.1|3024947_3025187_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03396.1|3025436_3026150_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03397.1|3027663_3028170_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AVU04766.1|3028331_3028910_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03398.1|3029001_3029502_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVU03399.1|3029568_3030414_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03400.1|3030464_3030743_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVU03401.1|3030962_3031151_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03402.1|3031564_3032173_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AVU03403.1|3033369_3035187_+	peptidase M14	NA	NA	NA	NA	NA
AVU04767.1|3035315_3037505_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AVU03404.1|3037950_3038748_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU03405.1|3038934_3039150_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03406.1|3040614_3042195_-	MFS transporter	NA	NA	NA	NA	NA
AVU03407.1|3042201_3043395_-	multidrug transporter	NA	NA	NA	NA	NA
AVU03408.1|3043417_3044923_-	multidrug RND transporter	NA	NA	NA	NA	NA
AVU04768.1|3044919_3045360_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVU03409.1|3045482_3046334_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVU03410.1|3046394_3048638_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	34.6	7.2e-81
AVU03411.1|3049083_3049569_-	bacterioferritin	NA	NA	NA	NA	NA
AVU03412.1|3049715_3052133_+	penicillin acylase family protein	NA	NA	NA	NA	NA
AVU03413.1|3052105_3052378_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03414.1|3052715_3054842_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AVU03415.1|3055283_3056390_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
AVU03416.1|3056458_3058153_-	asparagine synthase B	NA	A0A0P0C1V4	Ostreococcus_lucimarinus_virus	38.8	1.3e-87
AVU03417.1|3058447_3059578_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AVU03418.1|3059582_3060098_-	GNAT family N-acetyltransferase	NA	A0A1X9I687	Streptococcus_phage	36.9	1.6e-20
AVU03419.1|3060094_3060451_-	arsenate reductase	NA	NA	NA	NA	NA
AVU03420.1|3060447_3060918_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03421.1|3060914_3062111_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AVU03422.1|3062127_3064737_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AVU03423.1|3064733_3065510_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AVU04769.1|3065828_3066353_+	SCPU domain-containing protein	NA	NA	NA	NA	NA
AVU03424.1|3066361_3067132_+	molecular chaperone	NA	NA	NA	NA	NA
AVU03425.1|3067148_3069500_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AVU03426.1|3069496_3070531_+|coat	spore coat protein U	coat	NA	NA	NA	NA
>prophage 19
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	3198127	3285727	4723880	protease,transposase	Hokovirus(25.0%)	53	NA	NA
AVU03530.1|3198127_3199504_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	48.1	1.2e-62
AVU03531.1|3200418_3200772_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03532.1|3200938_3202870_-	alpha-L-fucosidase	NA	NA	NA	NA	NA
AVU04775.1|3204205_3207754_-	histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.3	2.6e-45
AVU04776.1|3208247_3211814_-	histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.3	7.7e-45
AVU03533.1|3211879_3215437_-	histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.7	8.3e-39
AVU03534.1|3215736_3219312_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.2	4.6e-37
AVU03535.1|3219408_3220071_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AVU03536.1|3220067_3220631_+	cytochrome b	NA	NA	NA	NA	NA
AVU03537.1|3220640_3221210_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AVU04777.1|3221527_3221917_+	cold-shock protein	NA	NA	NA	NA	NA
AVU03538.1|3222002_3222236_-	glutaredoxin family protein	NA	NA	NA	NA	NA
AVU03539.1|3222323_3223706_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
AVU03540.1|3225473_3226691_-	O-succinylhomoserine (thiol)-lyase	NA	NA	NA	NA	NA
AVU04778.1|3226687_3227719_-	homoserine acetyltransferase	NA	NA	NA	NA	NA
AVU03541.1|3228049_3228937_+	M23 family peptidase	NA	S5M424	Bacillus_phage	30.6	3.0e-06
AVU03542.1|3229069_3230674_+	peptide chain release factor 3	NA	NA	NA	NA	NA
AVU03543.1|3230749_3231394_+	hemolysin III	NA	NA	NA	NA	NA
AVU03544.1|3232998_3234375_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.5	2.0e-78
AVU03545.1|3234802_3235231_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AVU03546.1|3235190_3236237_-	glycosyltransferase	NA	F1C5B0	Cronobacter_phage	42.6	1.3e-72
AVU03547.1|3236239_3236977_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AVU03548.1|3237051_3237942_+	heat-shock protein Hsp33	NA	NA	NA	NA	NA
AVU03549.1|3238062_3238932_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03550.1|3239327_3242237_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.4	6.6e-26
AVU03551.1|3242345_3242954_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVU03552.1|3243090_3244014_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVU03553.1|3244010_3246485_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AVU04779.1|3246879_3247233_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
AVU03554.1|3249211_3250591_+	serine hydrolase	NA	NA	NA	NA	NA
AVU03555.1|3251277_3251721_-	histidine biosynthesis protein HisIE	NA	NA	NA	NA	NA
AVU03556.1|3252138_3252354_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03557.1|3252736_3253132_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
AVU03558.1|3253268_3254378_-	glycine cleavage system protein T	NA	NA	NA	NA	NA
AVU03559.1|3254550_3254985_-	NfeD family protein	NA	NA	NA	NA	NA
AVU03560.1|3254988_3255954_-	SPFH/Band 7/PHB domain protein	NA	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	33.5	1.5e-22
AVU03561.1|3256251_3256587_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	56.4	9.2e-25
AVU03562.1|3256583_3257603_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AVU03563.1|3257847_3258648_-	3'(2'),5'-bisphosphate nucleotidase	NA	NA	NA	NA	NA
AVU03564.1|3258644_3259202_-	ADP compounds hydrolase NudE	NA	NA	NA	NA	NA
AVU03565.1|3259234_3260653_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA	NA
AVU03566.1|3260643_3261378_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AVU03567.1|3261679_3262696_-	glucokinase	NA	NA	NA	NA	NA
AVU03568.1|3263396_3266105_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AVU03569.1|3266313_3267999_+	alpha-L-fucosidase	NA	NA	NA	NA	NA
AVU03570.1|3268002_3269070_+	glycosyl hydrolase	NA	A0A2P1CFB9	Microbacterium_phage	24.3	3.0e-08
AVU03571.1|3271999_3274621_+	beta-mannosidase	NA	NA	NA	NA	NA
AVU03572.1|3274829_3277499_+	beta-glucosidase	NA	NA	NA	NA	NA
AVU03573.1|3277643_3279758_-	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	26.5	1.4e-33
AVU03574.1|3279761_3280589_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AVU03575.1|3281019_3282396_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU03576.1|3283247_3284093_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	3.8e-43
AVU04780.1|3284710_3285727_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.3	5.6e-49
>prophage 20
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	3581684	3601713	4723880	tRNA,transposase	Ralstonia_phage(60.0%)	14	NA	NA
AVU03763.1|3581684_3582653_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	1.6e-98
AVU03764.1|3583011_3583404_-	histone-like nucleoid-structuring protein	NA	NA	NA	NA	NA
AVU03765.1|3586547_3587516_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
AVU03766.1|3587760_3589137_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU04800.1|3589401_3590505_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.5	2.9e-43
AVU04801.1|3591365_3592368_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.5	4.2e-97
AVU03767.1|3595452_3595653_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
AVU03768.1|3596015_3596810_+	thiazole synthase	NA	NA	NA	NA	NA
AVU03769.1|3596802_3597096_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03770.1|3597111_3597870_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AVU03771.1|3597945_3599808_+	SLC13 family permease	NA	NA	NA	NA	NA
AVU03772.1|3599865_3600207_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AVU03773.1|3600465_3600741_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03774.1|3600914_3601713_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	3689350	3749346	4723880	protease,transposase	Ralstonia_phage(25.0%)	47	NA	NA
AVU03837.1|3689350_3690727_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.0	6.0e-62
AVU03838.1|3690991_3691642_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03839.1|3692014_3693304_-	citrate synthase	NA	NA	NA	NA	NA
AVU03840.1|3693538_3693781_-	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
AVU03841.1|3693851_3694790_-	nucleoside hydrolase	NA	NA	NA	NA	NA
AVU03842.1|3694922_3697076_-	DNA helicase RecG	NA	NA	NA	NA	NA
AVU03843.1|3697096_3697477_-	RidA family protein	NA	NA	NA	NA	NA
AVU03844.1|3697556_3699728_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.8	2.8e-13
AVU03845.1|3699856_3700156_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AVU03846.1|3700424_3701036_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	31.5	1.8e-10
AVU03847.1|3701151_3702012_-	YicC family protein	NA	NA	NA	NA	NA
AVU03848.1|3702121_3702847_+	ribonuclease PH	NA	NA	NA	NA	NA
AVU03849.1|3703208_3703832_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	C6K8R3	Cassava_brown_streak_virus	34.2	2.0e-12
AVU03850.1|3703847_3705005_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AVU03851.1|3705171_3707592_+	DUF1631 domain-containing protein	NA	NA	NA	NA	NA
AVU03852.1|3707588_3707936_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
AVU04805.1|3708134_3709460_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
AVU03853.1|3710346_3711687_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AVU04806.1|3711697_3712240_-	YecA family protein	NA	NA	NA	NA	NA
AVU04807.1|3712477_3712699_+	TIGR02449 family protein	NA	NA	NA	NA	NA
AVU03854.1|3712695_3712995_+	cell division protein ZapA	NA	NA	NA	NA	NA
AVU03855.1|3713605_3714196_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AVU03856.1|3714192_3714663_+	EVE domain-containing protein	NA	NA	NA	NA	NA
AVU03857.1|3714754_3715402_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
AVU04808.1|3715556_3716006_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
AVU03858.1|3716155_3717037_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03859.1|3717086_3717326_-	rubredoxin	NA	NA	NA	NA	NA
AVU03860.1|3717349_3717973_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AVU03861.1|3721880_3723170_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AVU03862.1|3723442_3723679_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03863.1|3723697_3726469_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AVU03864.1|3726547_3726997_-	azurin	NA	NA	NA	NA	NA
AVU03865.1|3728440_3728944_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03866.1|3729392_3730359_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	2.5e-99
AVU03867.1|3732939_3733557_+	hydrolase	NA	NA	NA	NA	NA
AVU03868.1|3733802_3735029_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	24.2	9.9e-16
AVU03869.1|3737198_3737996_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AVU03870.1|3738043_3738703_-	serine/threonine protein kinase	NA	NA	NA	NA	NA
AVU03871.1|3738854_3740942_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AVU03872.1|3741055_3741325_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03873.1|3741664_3742549_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03874.1|3742695_3743292_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AVU04809.1|3743291_3744650_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AVU03875.1|3745014_3745578_-	adenylate kinase	NA	A0A1B4XWI3	Tenacibaculum_phage	31.4	2.1e-13
AVU03876.1|3745737_3746994_+	6-phosphofructokinase	NA	NA	NA	NA	NA
AVU03877.1|3747293_3748262_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	1.6e-98
AVU03878.1|3748383_3749346_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	3787517	3824627	4723880	protease,transposase	Ralstonia_phage(22.22%)	31	NA	NA
AVU03904.1|3787517_3788486_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.7	5.1e-100
AVU03905.1|3788488_3788767_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03906.1|3788667_3789684_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	3.3e-49
AVU03907.1|3789599_3789938_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03908.1|3789934_3790993_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.2	1.8e-74
AVU03909.1|3791000_3791147_-	hypothetical protein	NA	NA	NA	NA	NA
AVU03910.1|3791147_3791567_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVU03911.1|3792401_3793667_-	hemolysin D	NA	NA	NA	NA	NA
AVU03912.1|3794214_3795591_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.0	6.0e-62
AVU03913.1|3796580_3796784_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04812.1|3796773_3797136_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AVU03914.1|3797866_3798835_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU03915.1|3800185_3800350_+	alpha-mannosidase	NA	NA	NA	NA	NA
AVU03916.1|3800525_3802835_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AVU03917.1|3803032_3804406_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AVU03918.1|3804700_3805873_+	porin	NA	NA	NA	NA	NA
AVU03919.1|3806194_3808840_+	hybrid sensor histidine kinase/response regulator	NA	B5LWN0	Feldmannia_species_virus	27.7	5.8e-13
AVU03920.1|3809155_3810505_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	36.3	1.3e-61
AVU03921.1|3810501_3811281_+	molybdenum ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVU03922.1|3811272_3812175_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVU03923.1|3812485_3813091_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVU04813.1|3814162_3814801_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVU03924.1|3815889_3817275_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.7	2.4e-10
AVU03925.1|3817267_3817969_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVU04814.1|3818224_3819418_+	porin	NA	NA	NA	NA	NA
AVU03926.1|3819417_3819651_+	magnesium transporter	NA	NA	NA	NA	NA
AVU03927.1|3819644_3820973_+	citrate transporter	NA	NA	NA	NA	NA
AVU03928.1|3821087_3821828_+	KR domain-containing protein	NA	NA	NA	NA	NA
AVU03929.1|3821848_3822046_+	hypothetical protein	NA	NA	NA	NA	NA
AVU03930.1|3822087_3823119_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AVU03931.1|3823250_3824627_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.7	3.2e-63
>prophage 24
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	3937974	3944344	4723880		Enterobacteria_phage(50.0%)	6	NA	NA
AVU04005.1|3937974_3939321_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.9	2.6e-33
AVU04006.1|3939366_3940770_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	28.8	1.6e-41
AVU04007.1|3940886_3941795_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	33.8	5.4e-27
AVU04008.1|3941791_3942349_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	48.1	1.7e-44
AVU04009.1|3942345_3943233_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	58.2	2.2e-94
AVU04010.1|3943288_3944344_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.0	4.3e-84
>prophage 25
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	4449214	4596875	4723880	tRNA,transposase	Leptospira_phage(13.79%)	96	NA	NA
AVU04368.1|4449214_4450335_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.5	3.9e-43
AVU04880.1|4450353_4451340_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.0e-99
AVU04369.1|4452770_4453739_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU04370.1|4454002_4457860_-	translocation/assembly module TamB	NA	NA	NA	NA	NA
AVU04371.1|4457856_4459638_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AVU04372.1|4459812_4462572_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	35.8	9.3e-147
AVU04373.1|4462824_4464414_-	sulfotransferase family protein	NA	NA	NA	NA	NA
AVU04374.1|4464413_4466672_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AVU04375.1|4466829_4467738_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AVU04376.1|4467827_4469642_+	type II/IV secretion system protein	NA	NA	NA	NA	NA
AVU04881.1|4470035_4478675_-	hypothetical protein	NA	A0A1S5SDF1	Streptococcus_phage	32.0	1.4e-10
AVU04377.1|4479452_4480205_+	GMP synthase	NA	NA	NA	NA	NA
AVU04378.1|4480264_4481164_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04379.1|4481316_4482072_-	twin-arginine translocase subunit TatC	NA	NA	NA	NA	NA
AVU04380.1|4482068_4482641_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AVU04381.1|4482656_4482884_-	twin-arginine translocase subunit TatA	NA	NA	NA	NA	NA
AVU04382.1|4482956_4483862_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04383.1|4484015_4484981_+	ferrochelatase	NA	NA	NA	NA	NA
AVU04882.1|4484983_4485835_+	alpha/beta hydrolase	NA	R4JP33	Mycobacterium_phage	31.3	1.3e-06
AVU04384.1|4485915_4486374_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04385.1|4486644_4487430_-	M48 family peptidase	NA	NA	NA	NA	NA
AVU04386.1|4487405_4487651_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04387.1|4488045_4488951_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	33.2	1.4e-43
AVU04388.1|4489014_4489932_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	62.5	3.1e-83
AVU04389.1|4490022_4490562_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04390.1|4490565_4491903_+	xylose isomerase	NA	NA	NA	NA	NA
AVU04391.1|4492027_4493086_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
AVU04392.1|4493217_4494285_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AVU04393.1|4494460_4496656_+	alpha-glucuronidase	NA	NA	NA	NA	NA
AVU04394.1|4496652_4498617_+	9-O-acetylesterase	NA	NA	NA	NA	NA
AVU04395.1|4498628_4499888_+	D-galactonate dehydratase family protein	NA	Q6A202	Oenococcus_phage	25.8	1.7e-39
AVU04883.1|4499887_4501588_+	glycoside hydrolase family 43 protein	NA	NA	NA	NA	NA
AVU04396.1|4501590_4504305_+	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA	NA
AVU04397.1|4504513_4506034_+	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	31.4	3.3e-45
AVU04398.1|4506028_4507087_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
AVU04399.1|4507242_4508619_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU04400.1|4508795_4509899_+	restriction endonuclease	NA	A0A1S5SAB0	Streptococcus_phage	40.4	9.4e-58
AVU04401.1|4509990_4510365_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
AVU04884.1|4511065_4512082_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.6	1.9e-49
AVU04402.1|4512704_4513760_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04403.1|4513986_4515405_-	glucuronate isomerase	NA	NA	NA	NA	NA
AVU04404.1|4515445_4516423_-	1,4-beta-xylanase	NA	NA	NA	NA	NA
AVU04405.1|4517827_4519309_-	MFS transporter	NA	NA	NA	NA	NA
AVU04885.1|4519650_4522524_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AVU04406.1|4522622_4524110_+	MFS transporter	NA	NA	NA	NA	NA
AVU04407.1|4524141_4525176_+	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
AVU04408.1|4525517_4526051_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04409.1|4526332_4527301_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
AVU04410.1|4527767_4528573_-|transposase	IS5/IS1182 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	36.0	7.7e-09
AVU04411.1|4528774_4529347_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04412.1|4529485_4529704_+	DUF465 domain-containing protein	NA	NA	NA	NA	NA
AVU04413.1|4529849_4530104_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04414.1|4530340_4531321_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AVU04415.1|4531516_4534180_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
AVU04416.1|4534179_4535154_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04417.1|4535152_4535398_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04418.1|4535566_4536619_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AVU04419.1|4536783_4539822_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04420.1|4540123_4543156_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04421.1|4543265_4544795_+	tryptophan 7-halogenase	NA	M4T1E3	Cyanophage	28.5	3.9e-46
AVU04422.1|4545101_4545881_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
AVU04423.1|4545877_4546888_-	acid phosphatase	NA	NA	NA	NA	NA
AVU04424.1|4547167_4547833_+	DUF480 domain-containing protein	NA	NA	NA	NA	NA
AVU04425.1|4549219_4551196_-	DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.0	3.1e-112
AVU04426.1|4551402_4552032_+	thymidine kinase	NA	A0A023W530	Serratia_phage	55.0	1.1e-52
AVU04427.1|4552490_4553729_+	histidine kinase	NA	NA	NA	NA	NA
AVU04886.1|4553871_4555470_-	glucan biosynthesis protein D	NA	NA	NA	NA	NA
AVU04428.1|4555538_4556630_-	DUF4380 domain-containing protein	NA	NA	NA	NA	NA
AVU04887.1|4556862_4557678_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	A0A127AWE5	Bacillus_phage	27.0	1.1e-18
AVU04429.1|4557966_4559343_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.3	2.1e-62
AVU04430.1|4565821_4567726_-	PAS domain-containing protein	NA	Q6XLU9	Feldmannia_irregularis_virus	27.7	3.0e-19
AVU04431.1|4567722_4568325_-	biliverdin-producing heme oxygenase	NA	NA	NA	NA	NA
AVU04432.1|4568425_4569685_-	tetracycline resistance MFS efflux pump	NA	NA	NA	NA	NA
AVU04433.1|4569975_4572138_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AVU04434.1|4572290_4572497_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04435.1|4572704_4573094_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04436.1|4573200_4574022_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04437.1|4574146_4575523_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	46.6	6.6e-61
AVU04438.1|4575654_4576836_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04439.1|4576933_4580365_-	ATP-binding protein	NA	NA	NA	NA	NA
AVU04440.1|4580512_4581211_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
AVU04441.1|4581194_4582667_-	DUF3375 domain-containing protein	NA	NA	NA	NA	NA
AVU04442.1|4582663_4583251_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AVU04443.1|4583250_4584447_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AVU04444.1|4584520_4585150_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	49.5	4.2e-47
AVU04445.1|4585243_4585741_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVU04446.1|4587154_4587679_+	FUSC family protein	NA	NA	NA	NA	NA
AVU04888.1|4587650_4588667_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.3	5.6e-49
AVU04447.1|4588667_4588886_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04448.1|4589073_4590435_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	27.1	5.8e-33
AVU04449.1|4590646_4592023_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	48.1	9.9e-65
AVU04889.1|4592711_4593425_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04450.1|4593455_4593962_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04451.1|4594235_4594442_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04452.1|4594428_4595541_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AVU04453.1|4595755_4596875_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.6	3.3e-42
>prophage 26
CP025610	Xanthomonas oryzae pv. oryzae strain BAI3 chromosome, complete genome	4723880	4622291	4659802	4723880	transposase	Ralstonia_phage(30.77%)	28	NA	NA
AVU04466.1|4622291_4623668_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.8	1.0e-77
AVU04467.1|4623678_4623972_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04468.1|4624082_4626278_-	TonB-dependent receptor	NA	A0A1B0VCF0	Salmonella_phage	40.6	2.4e-65
AVU04469.1|4626376_4627579_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AVU04470.1|4627849_4628860_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	37.8	7.3e-49
AVU04471.1|4629134_4629602_+	DUF4410 domain-containing protein	NA	NA	NA	NA	NA
AVU04472.1|4630978_4632355_-|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	4.6e-78
AVU04473.1|4632470_4632794_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04474.1|4632900_4633869_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	4.3e-99
AVU04475.1|4634897_4637333_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04476.1|4637343_4638120_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04477.1|4638141_4639437_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04894.1|4639456_4641583_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	26.3	7.9e-29
AVU04895.1|4641839_4643087_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	46.6	2.1e-61
AVU04896.1|4644379_4644790_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AVU04478.1|4645049_4645505_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04479.1|4645437_4645635_-	hypothetical protein	NA	NA	NA	NA	NA
AVU04480.1|4645728_4646616_-	pseudouridylate synthase	NA	NA	NA	NA	NA
AVU04481.1|4646949_4648527_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04482.1|4649021_4649849_+	restriction endonuclease	NA	NA	NA	NA	NA
AVU04483.1|4650575_4651634_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	42.9	2.6e-73
AVU04484.1|4652950_4653919_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	9.6e-99
AVU04485.1|4653921_4654125_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04486.1|4654132_4655191_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	43.5	6.2e-75
AVU04487.1|4655637_4656606_-|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	2.5e-99
AVU04488.1|4656604_4657165_+	hypothetical protein	NA	NA	NA	NA	NA
AVU04489.1|4657437_4658539_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	3.8e-43
AVU04490.1|4658833_4659802_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	7.3e-99
