The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028333	Listeria monocytogenes strain CFSAN054108 chromosome, complete genome	2994410	215650	222177	2994410	tail	Streptococcus_pyogenes_phage(33.33%)	10	NA	NA
AVS33337.1|215650_216469_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
AVS33338.1|216465_218334_-	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
AVS33339.1|218320_218725_-	phenylalanine racemase	NA	NA	NA	NA	NA
AVS33340.1|218766_219069_-	segregation and condensation protein B	NA	NA	NA	NA	NA
AVS33341.1|219116_219629_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
AVS33342.1|219641_220031_-	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
AVS33343.1|220310_220727_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	37.9	3.2e-19
AVS33344.1|220738_221167_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33345.1|221383_221719_+	XRE family transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
AVS33346.1|221724_222177_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
>prophage 2
CP028333	Listeria monocytogenes strain CFSAN054108 chromosome, complete genome	2994410	229640	301466	2994410	terminase,capsid,holin,transposase,integrase,tail	Listeria_phage(95.0%)	90	263089:263133	300348:300392
AVS33353.1|229640_231038_+|transposase	IS5/IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	50.0	1.2e-118
AVS33354.1|231088_231991_-	ROK family protein	NA	NA	NA	NA	NA
AVS33355.1|232093_234364_-	chitinase	NA	A0A2K9L3D4	Tupanvirus	32.1	7.6e-38
AVS33356.1|234654_235026_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33357.1|235121_235754_-	nitroreductase family protein	NA	NA	NA	NA	NA
AVS33358.1|235767_236058_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AVS33359.1|236169_236463_+	transcriptional regulator	NA	NA	NA	NA	NA
AVS36014.1|236577_238095_+	pyruvyl-transferase	NA	NA	NA	NA	NA
AVS33360.1|238135_238486_-	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
AVS33361.1|238619_239009_-	DUF956 domain-containing protein	NA	NA	NA	NA	NA
AVS33362.1|239135_240047_-	PTS mannose family transporter subunit IID	NA	NA	NA	NA	NA
AVS33363.1|240068_240875_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AVS33364.1|240898_241864_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AVS33365.1|242161_242794_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33366.1|242968_243529_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33367.1|243509_243842_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33368.1|243854_245225_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AVS33369.1|245225_246095_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
AVS33370.1|246091_247588_-	ATP synthase subunit alpha 1	NA	NA	NA	NA	NA
AVS36015.1|247584_248616_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33371.1|248627_248870_-	ATP F0F1 synthase subunit C	NA	NA	NA	NA	NA
AVS33372.1|248926_251236_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33373.1|251232_257112_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AVS33374.1|257188_257878_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AVS33375.1|258268_259252_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVS33376.1|259307_259676_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AVS33377.1|259742_260084_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33378.1|260209_260554_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33379.1|261026_261404_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33380.1|261385_262909_-	hypothetical protein	NA	NA	NA	NA	NA
263089:263133	attL	TATGGGTTGTGAGGGTTTCGAACCCCCGACCCGCTGATTAAGAGT	NA	NA	NA	NA
AVS33381.1|263232_263439_-	hypothetical protein	NA	A8ASL9	Listeria_phage	79.4	8.7e-26
AVS33382.1|263435_263669_-	hypothetical protein	NA	R4IDW6	Listeria_phage	97.4	3.6e-36
AVS33383.1|263905_264298_-	hypothetical protein	NA	A8ATC1	Listeria_phage	100.0	5.1e-67
AVS33384.1|264294_264798_-	DUF4065 domain-containing protein	NA	A8ATC0	Listeria_phage	100.0	7.0e-93
AVS33385.1|265200_266127_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	R4ICC5	Listeria_phage	92.2	9.9e-170
AVS33386.1|266128_266362_-	hypothetical protein	NA	R4IBI3	Listeria_phage	92.2	1.7e-33
AVS33387.1|266358_266643_-|holin	holin	holin	R4IDW2	Listeria_phage	98.9	5.7e-44
AVS33388.1|266655_267021_-	hypothetical protein	NA	A8ASL3	Listeria_phage	100.0	1.3e-11
AVS33389.1|267057_267204_-	XkdX family protein	NA	A8ASL2	Listeria_phage	100.0	1.1e-19
AVS33390.1|267204_267546_-	hypothetical protein	NA	A0A059T7P5	Listeria_phage	95.6	2.3e-55
AVS33391.1|267542_268610_-	DUF2479 domain-containing protein	NA	A0A0B5D119	Listeria_phage	83.9	1.7e-157
AVS33392.1|268606_269635_-	hypothetical protein	NA	A0A0B5D0C2	Listeria_phage	100.0	2.2e-194
AVS33393.1|269631_270645_-	hypothetical protein	NA	A0A0B5CYL4	Listeria_phage	100.0	1.2e-187
AVS33394.1|270657_271482_-|tail	phage tail family protein	tail	A0A0B5CTY7	Listeria_phage	100.0	5.9e-158
AVS33395.1|271485_276291_-|tail	phage tail tape measure protein	tail	A0A0B5CTS6	Listeria_phage	88.7	0.0e+00
AVS33396.1|276295_276607_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	98.9	1.2e-42
AVS33397.1|276603_277035_-	hypothetical protein	NA	A0A0B5D0B8	Listeria_phage	95.1	3.2e-70
AVS33398.1|277084_277771_-	hypothetical protein	NA	A8ATV6	Listeria_phage	92.1	2.7e-108
AVS33399.1|277775_278147_-	hypothetical protein	NA	A8ATV5	Listeria_phage	100.0	8.5e-64
AVS33400.1|278143_278461_-	hypothetical protein	NA	A8ATV4	Listeria_phage	93.3	2.5e-48
AVS33401.1|278450_278816_-	hypothetical protein	NA	A8ATV3	Listeria_phage	97.5	8.4e-64
AVS33402.1|278815_279169_-	hypothetical protein	NA	A8ATV2	Listeria_phage	98.3	4.2e-60
AVS33403.1|279350_280223_-	hypothetical protein	NA	A8ATV0	Listeria_phage	99.0	1.4e-160
AVS33404.1|280245_280800_-	hypothetical protein	NA	A8ATU9	Listeria_phage	97.3	6.3e-87
AVS33405.1|280895_281939_-|capsid	minor capsid protein	capsid	A0A0B5D111	Listeria_phage	98.6	2.0e-198
AVS33406.1|281943_283500_-	hypothetical protein	NA	A8ATU7	Listeria_phage	98.6	6.5e-299
AVS33407.1|283514_284834_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	98.9	9.9e-264
AVS33408.1|284826_285567_-	TerS	NA	A8ATU5	Listeria_phage	98.8	7.0e-134
AVS33409.1|285606_285834_-	hypothetical protein	NA	A0A0B5CTV3	Listeria_phage	94.7	1.8e-32
AVS33410.1|286095_286668_-	RNA polymerase subunit sigma-70	NA	A0A0B5CTZ3	Listeria_phage	82.1	7.9e-85
AVS33411.1|286757_286913_-	DUF3954 domain-containing protein	NA	A0A0B5D186	Listeria_phage	96.1	7.5e-22
AVS33412.1|286953_287337_-	DUF2481 domain-containing protein	NA	A8ASP8	Listeria_phage	56.7	2.9e-35
AVS33413.1|287340_287745_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	83.6	1.7e-57
AVS33414.1|287689_287872_-	hypothetical protein	NA	A8ASP6	Listeria_phage	81.0	2.2e-17
AVS33415.1|287890_288373_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	71.9	5.5e-55
AVS33416.1|288373_288628_-	hypothetical protein	NA	A0A059T5G2	Listeria_phage	92.8	3.4e-40
AVS33417.1|288627_288831_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33418.1|288830_289028_-	hypothetical protein	NA	A8ASP4	Listeria_phage	71.9	5.2e-20
AVS33419.1|289024_289234_-	hypothetical protein	NA	A0A059T6C7	Listeria_phage	62.1	1.2e-14
AVS33420.1|289230_289446_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33421.1|289442_289727_-	hypothetical protein	NA	A0A059T7S7	Listeria_phage	86.2	5.0e-40
AVS33422.1|289726_290230_-	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	45.4	1.6e-28
AVS33423.1|290226_290790_-	hypothetical protein	NA	A0A0B5D0I5	Listeria_phage	77.7	4.9e-55
AVS33424.1|290786_290996_-	hypothetical protein	NA	A8ASN7	Listeria_phage	92.8	6.1e-27
AVS33425.1|291045_291966_-	hypothetical protein	NA	A0A0B5D175	Listeria_phage	37.0	5.5e-19
AVS33426.1|291995_292811_-	recombinase RecT	NA	A8ATY6	Listeria_phage	97.4	4.2e-148
AVS33427.1|292813_293773_-	hypothetical protein	NA	A8ATY5	Listeria_phage	98.7	1.3e-177
AVS33428.1|294005_294194_-	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	100.0	4.5e-29
AVS33429.1|294209_294395_-	helix-turn-helix domain-containing protein	NA	A0A059T674	Listeria_phage	100.0	1.1e-27
AVS33430.1|294401_294926_-	hypothetical protein	NA	A8ATY1	Listeria_phage	97.7	2.0e-87
AVS33431.1|295256_295448_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	100.0	7.0e-30
AVS33432.1|295459_295654_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	98.4	2.8e-26
AVS33433.1|295674_295884_-	transcriptional regulator	NA	A0A0B5D0D3	Listeria_phage	95.6	3.5e-30
AVS33434.1|296049_296472_+	XRE family transcriptional regulator	NA	A0A0B5CYL9	Listeria_phage	98.6	7.7e-69
AVS33435.1|296487_296913_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0B5CTZ7	Listeria_phage	100.0	2.2e-76
AVS33436.1|296927_297635_+	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	100.0	2.8e-124
AVS33437.1|297693_298395_+	hypothetical protein	NA	A0A0B5D125	Listeria_phage	100.0	6.7e-102
AVS33438.1|298409_298946_+	hypothetical protein	NA	A0A0B5D0D1	Listeria_phage	33.6	6.9e-06
AVS33439.1|299040_300243_+|integrase	site-specific integrase	integrase	A0A059T666	Listeria_phage	99.2	9.4e-221
AVS33440.1|300509_301466_-	hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	29.6	1.6e-29
300348:300392	attR	TATGGGTTGTGAGGGTTTCGAACCCCCGACCCGCTGATTAAGAGT	NA	NA	NA	NA
>prophage 3
CP028333	Listeria monocytogenes strain CFSAN054108 chromosome, complete genome	2994410	773940	781785	2994410		Streptococcus_phage(50.0%)	7	NA	NA
AVS33901.1|773940_774900_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
AVS33902.1|775019_776003_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
AVS33903.1|776019_777081_+	galactose-1-epimerase	NA	NA	NA	NA	NA
AVS33904.1|777122_778853_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	5.6e-174
AVS33905.1|778960_779836_+	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
AVS33906.1|779837_780806_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.6	1.8e-68
AVS33907.1|780813_781785_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
>prophage 4
CP028333	Listeria monocytogenes strain CFSAN054108 chromosome, complete genome	2994410	1506991	1515277	2994410		Prochlorococcus_phage(33.33%)	8	NA	NA
AVS34577.1|1506991_1508284_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
AVS34578.1|1508364_1509078_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	6.7e-41
AVS34579.1|1509089_1509335_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVS34580.1|1509338_1510022_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVS34581.1|1510014_1512234_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
AVS34582.1|1512218_1513646_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
AVS34583.1|1513664_1514714_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
AVS34584.1|1514710_1515277_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	38.5	8.3e-26
