assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003030285.1_ASM303028v1	CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	1	1783219-1783328	1	CRISPRCasFinder	no		cas14j,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA|80aa|up_7|CP028199.1_1773453_1773693_-,NA|198aa|up_4|CP028199.1_1777091_1777685_+,NA|276aa|up_2|CP028199.1_1779602_1780430_-,NA	NA|78aa|up_9|CP028199.1_1772667_1772901_-	pfam10893, DUF2724, Protein of unknown function (DUF2724)	NA|170aa|up_8|CP028199.1_1772908_1773418_-	pfam06892, Phage_CP76, Phage regulatory protein CII (CP76)	NA|80aa|up_7|CP028199.1_1773453_1773693_-	NA	NA|211aa|up_6|CP028199.1_1773809_1774442_+	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain	NA|342aa|up_5|CP028199.1_1774445_1775471_+	PHA02601, int, integrase; Provisional	NA|198aa|up_4|CP028199.1_1777091_1777685_+	NA	NA|398aa|up_3|CP028199.1_1778074_1779268_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|CP028199.1_1779602_1780430_-	NA	NA|72aa|up_1|CP028199.1_1780880_1781096_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|CP028199.1_1781131_1783201_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|CP028199.1_1783703_1784987_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|CP028199.1_1785031_1785850_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|CP028199.1_1786003_1786360_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|CP028199.1_1786454_1786739_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|CP028199.1_1786851_1787373_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|CP028199.1_1787369_1787744_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|CP028199.1_1787740_1788721_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|CP028199.1_1788731_1789745_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|CP028199.1_1790039_1791242_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|CP028199.1_1791315_1791951_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCA_003030285.1_ASM303028v1	CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	2	1974245-1975781	2,1,1,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas14j,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACT,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,30,28,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	23,24,22,22,24,23	24	TypeI-E	cas14j,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA,NA|75aa|down_8|CP028199.1_1984441_1984666_+	NA|254aa|up_9|CP028199.1_1966111_1966873_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP028199.1_1966853_1967903_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP028199.1_1967899_1968379_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP028199.1_1968378_1969089_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP028199.1_1969107_1969419_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|CP028199.1_1969609_1969966_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP028199.1_1969983_1970589_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|CP028199.1_1970575_1972015_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP028199.1_1972024_1972933_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|CP028199.1_1973183_1974230_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP028199.1_1975877_1976171_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP028199.1_1976170_1977091_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP028199.1_1977087_1977738_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP028199.1_1977719_1978466_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|CP028199.1_1978476_1979535_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|CP028199.1_1979548_1980109_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|CP028199.1_1980105_1981662_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|CP028199.1_1981673_1984337_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|75aa|down_8|CP028199.1_1984441_1984666_+	NA	NA|318aa|down_9|CP028199.1_1984781_1985735_+	PRK15379, PRK15379, type III secretion system effector SopD
GCA_003030285.1_ASM303028v1	CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	3	1991913-1993894	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas14j,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	32,32,31	32	TypeI-E	cas14j,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA|75aa|up_7|CP028199.1_1984441_1984666_+,NA|57aa|up_2|CP028199.1_1990468_1990639_-,NA	cas8e|519aa|up_9|CP028199.1_1980105_1981662_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_8|CP028199.1_1981673_1984337_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|75aa|up_7|CP028199.1_1984441_1984666_+	NA	NA|318aa|up_6|CP028199.1_1984781_1985735_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_5|CP028199.1_1985822_1986557_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_4|CP028199.1_1986632_1988345_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_3|CP028199.1_1988344_1990144_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|57aa|up_2|CP028199.1_1990468_1990639_-	NA	NA|121aa|up_1|CP028199.1_1990567_1990930_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|CP028199.1_1991017_1991815_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|CP028199.1_1994190_1994862_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|CP028199.1_1994997_1996296_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|CP028199.1_1996378_1998016_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|CP028199.1_1998243_1999044_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|CP028199.1_1999811_2000108_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|CP028199.1_2000073_2000430_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|CP028199.1_2000513_2002748_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|CP028199.1_2002799_2004095_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|CP028199.1_2004152_2006909_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|CP028199.1_2006952_2008095_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
