The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	2178	41321	4857558	capsid,protease,holin,lysis,transposase,terminase,head,portal,tail	Salmonella_phage(42.86%)	53	NA	NA
AVS55490.1|2178_2337_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
AVS55491.1|3167_3407_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
AVS55492.1|3372_3747_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AVS55493.1|3831_4815_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
AVS55494.1|4817_5567_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AVS55495.1|5577_5925_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
AVS55496.1|5921_6233_+	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
AVS55497.1|6310_6601_+	hypothetical protein	NA	NA	NA	NA	NA
AVS55498.1|6892_7126_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
AVS55499.1|7237_7459_+	hypothetical protein	NA	NA	NA	NA	NA
AVS55500.1|7541_8144_+	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	1.1e-108
AVS55501.1|8143_8350_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
AVS55502.1|8352_8964_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
AVS55503.1|8960_9101_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
AVS55504.1|9097_9775_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
AVS55505.1|9771_9957_+	hypothetical protein	NA	NA	NA	NA	NA
AVS55506.1|10047_10611_+	hypothetical protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
AVS55507.1|11117_11306_+	hypothetical protein	NA	NA	NA	NA	NA
AVS55508.1|11520_12207_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	99.6	7.9e-132
AVS59987.1|12482_12812_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
AVS55509.1|12795_13248_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
AVS59988.1|13265_13718_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
AVS55510.1|13953_14355_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
AVS55511.1|14389_14584_+	hypothetical protein	NA	NA	NA	NA	NA
AVS55512.1|14641_15187_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
AVS55513.1|15158_17090_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
AVS55514.1|17073_17277_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
AVS55515.1|17273_18854_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
AVS55516.1|18843_20340_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
AVS55517.1|20352_20700_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
AVS55518.1|20754_21783_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
AVS55519.1|21840_22200_+	DNA packaging protein	NA	NA	NA	NA	NA
AVS55520.1|22210_22594_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
AVS55521.1|22621_23200_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
AVS55522.1|23248_24499_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	7.8e-218
AVS55523.1|24487_24889_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
AVS55524.1|24896_25643_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
AVS55525.1|25693_26089_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
AVS55526.1|26085_26424_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
AVS55527.1|26395_29491_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
AVS55528.1|29493_29823_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
AVS55529.1|29832_30531_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
AVS55530.1|30537_31275_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
AVS55531.1|31172_31820_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
AVS55532.1|31881_35244_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
AVS55533.1|35282_35525_+	hypothetical protein	NA	NA	NA	NA	NA
AVS55534.1|35578_37951_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
AVS55535.1|37947_38772_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
AVS55536.1|38761_39340_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
AVS55537.1|39436_39664_-	phage virulence factor	NA	NA	NA	NA	NA
AVS55538.1|39770_39983_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
AVS59989.1|40045_40111_+	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
AVS55539.1|40775_41321_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	429427	441718	4857558	tail,holin	Salmonella_phage(45.45%)	11	NA	NA
AVS55885.1|429427_431794_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
AVS60001.1|432122_433112_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
AVS55886.1|433126_433495_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
AVS55887.1|433523_434855_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
AVS55888.1|435151_435481_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
AVS55889.1|436073_437315_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
AVS55890.1|437317_437845_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
AVS55891.1|438222_438666_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
AVS55892.1|438719_440549_-	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
AVS55893.1|440896_441187_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
AVS55894.1|441214_441718_+	DNA polymerase V	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
>prophage 3
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	513770	522941	4857558	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AVS55963.1|513770_514718_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
AVS55964.1|514701_515433_+	ABC transporter permease	NA	NA	NA	NA	NA
AVS55965.1|515413_515521_-	hypothetical protein	NA	NA	NA	NA	NA
AVS55966.1|515580_516312_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AVS55967.1|516534_518220_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
AVS55968.1|518216_518936_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVS55969.1|518982_519450_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AVS55970.1|519506_520037_-	hypothetical protein	NA	NA	NA	NA	NA
AVS55971.1|520208_520667_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AVS55972.1|520907_522941_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	591249	601755	4857558		Enterobacteria_phage(37.5%)	10	NA	NA
AVS56027.1|591249_592653_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
AVS56028.1|592830_593724_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AVS56029.1|594100_595186_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
AVS56030.1|595185_596085_+	NAD(P)-dependent oxidoreductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
AVS56031.1|596132_597011_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
AVS56032.1|597011_597563_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
AVS56033.1|597568_598561_+	protein RfbI	NA	NA	NA	NA	NA
AVS56034.1|598557_599331_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AVS56035.1|599335_600415_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
AVS56036.1|600441_601755_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 5
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	687749	698352	4857558		Morganella_phage(25.0%)	13	NA	NA
AVS56120.1|687749_688223_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
AVS56121.1|688870_689161_-	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
AVS56122.1|689532_690330_-	protein MtfA	NA	NA	NA	NA	NA
AVS56123.1|690590_690833_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56124.1|690810_690972_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56125.1|691098_691518_+	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AVS56126.1|691520_692789_+	protein UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
AVS56127.1|693243_693456_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AVS60008.1|693466_693655_+	cold-shock protein	NA	NA	NA	NA	NA
AVS56128.1|693915_695112_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
AVS56129.1|695761_696061_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56130.1|696152_696848_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
AVS56131.1|696921_698352_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 6
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	802396	832622	4857558	integrase,protease,tail	Escherichia_phage(18.18%)	39	806258:806272	824745:824759
AVS56240.1|802396_802627_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AVS56241.1|802764_803139_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AVS56242.1|803139_804015_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56243.1|804031_804385_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AVS60014.1|804442_804562_+	hypothetical protein	NA	NA	NA	NA	NA
AVS60013.1|804758_805613_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
AVS60015.1|805672_806167_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
806258:806272	attL	CAGACATTTGCCCGC	NA	NA	NA	NA
AVS56244.1|806356_806587_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
AVS56245.1|806640_807174_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
AVS56246.1|807430_807598_-	lytic enzyme	NA	NA	NA	NA	NA
AVS56247.1|807662_807851_-	hypothetical protein	NA	NA	NA	NA	NA
AVS56248.1|808323_809205_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
AVS56249.1|809301_809502_-	phage virulence factor	NA	NA	NA	NA	NA
AVS56250.1|809692_809809_-|tail	phage tail protein	tail	NA	NA	NA	NA
AVS56251.1|810071_810197_+	arsenic transporter	NA	NA	NA	NA	NA
AVS56252.1|811344_811959_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AVS56253.1|811968_812127_-	hypothetical protein	NA	NA	NA	NA	NA
AVS56254.1|812259_813174_-	protein PagO	NA	NA	NA	NA	NA
AVS60016.1|813791_813992_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56255.1|814282_814540_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56256.1|814477_814846_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
AVS56257.1|816309_816450_-	hypothetical protein	NA	NA	NA	NA	NA
AVS56258.1|816615_816885_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
AVS56259.1|816931_817126_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56260.1|817254_817674_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVS56261.1|818061_818538_-	hypothetical protein	NA	NA	NA	NA	NA
AVS56262.1|818867_819263_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	9.2e-16
AVS56263.1|819946_820669_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AVS56264.1|820953_821118_+	hypothetical protein	NA	NA	NA	NA	NA
AVS56265.1|821341_821992_+	serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
AVS56266.1|822010_822202_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AVS56267.1|822312_822552_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
AVS60017.1|822666_824106_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AVS56268.1|824183_826823_-	MCE family protein	NA	NA	NA	NA	NA
824745:824759	attR	GCGGGCAAATGTCTG	NA	NA	NA	NA
AVS56269.1|826785_828069_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AVS56270.1|828110_828695_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AVS56271.1|828792_829479_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
AVS56272.1|829498_831547_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
AVS56273.1|831740_832622_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 7
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	1596461	1686080	4857558	protease,holin,tRNA,lysis,terminase,integrase,portal,tail	Salmonella_phage(41.07%)	102	1669155:1669170	1692740:1692755
AVS57029.1|1596461_1597142_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
AVS57030.1|1597487_1597697_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57031.1|1597762_1598422_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
AVS57032.1|1598508_1598838_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AVS57033.1|1598834_1599116_-	acylphosphatase	NA	NA	NA	NA	NA
AVS57034.1|1599164_1599944_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVS57035.1|1599969_1600518_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AVS57036.1|1600732_1601944_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
AVS57037.1|1602001_1602319_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
AVS57038.1|1602363_1602780_-	CoA-binding protein	NA	NA	NA	NA	NA
AVS57039.1|1602950_1603613_+	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
AVS57040.1|1603707_1604166_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AVS57041.1|1604201_1606256_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
AVS57042.1|1606379_1606826_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AVS57043.1|1606844_1608998_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AVS57044.1|1608984_1609590_-	DNA transformation protein	NA	NA	NA	NA	NA
AVS57045.1|1609806_1610316_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AVS57046.1|1610672_1611725_+	outer membrane protein A	NA	NA	NA	NA	NA
AVS57047.1|1611796_1612249_-	macrodomain Ter protein	NA	NA	NA	NA	NA
AVS57048.1|1612434_1614195_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AVS57049.1|1614263_1614782_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AVS57050.1|1614881_1615049_-	ribosome modulation factor	NA	NA	NA	NA	NA
AVS57051.1|1615304_1615868_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57052.1|1615864_1617505_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
AVS57053.1|1617509_1618763_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AVS57054.1|1618777_1620685_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
AVS57055.1|1620697_1622806_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
AVS57056.1|1622904_1624014_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AVS57057.1|1624010_1624553_-	cell division protein ZapC	NA	NA	NA	NA	NA
AVS57058.1|1624718_1625729_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AVS57059.1|1625936_1628549_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
AVS57060.1|1628975_1629167_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
AVS57061.1|1629437_1630124_+	virulence protein	NA	NA	NA	NA	NA
AVS57062.1|1630108_1630408_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57063.1|1630476_1631103_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
AVS57064.1|1631750_1632719_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.7	7.9e-194
AVS57065.1|1633194_1633776_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
AVS57066.1|1633775_1636214_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
AVS57067.1|1636267_1636510_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57068.1|1636548_1637424_-	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	77.1	1.1e-48
AVS57069.1|1637450_1639898_-	host specificity protein J	NA	Q687E8	Enterobacteria_phage	68.0	0.0e+00
AVS57070.1|1639969_1640674_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
AVS57071.1|1640571_1641309_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
AVS57072.1|1641318_1642014_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
AVS57073.1|1642103_1642637_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
AVS57074.1|1642753_1643251_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
AVS57075.1|1643349_1643682_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
AVS60052.1|1643678_1646666_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
AVS57076.1|1646745_1647075_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
AVS57077.1|1647071_1647470_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
AVS57078.1|1647515_1648265_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
AVS57079.1|1648276_1648678_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
AVS57080.1|1648674_1649241_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
AVS57081.1|1649221_1649521_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
AVS57082.1|1649513_1649837_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
AVS60054.1|1649927_1652009_-	peptidase S14	NA	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
AVS60053.1|1651932_1653450_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
AVS57083.1|1653476_1653683_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
AVS57084.1|1653679_1655818_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
AVS57085.1|1655774_1656308_-	DNA breaking-rejoining protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
AVS60056.1|1656515_1656995_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
AVS57086.1|1657012_1657465_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
AVS60055.1|1657448_1657778_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
AVS57087.1|1658053_1658740_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
AVS57088.1|1659100_1659550_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57089.1|1659685_1659811_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57090.1|1659984_1660302_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57091.1|1660368_1661166_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
AVS57092.1|1661155_1661302_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
AVS57093.1|1661298_1661910_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
AVS57094.1|1661912_1662119_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
AVS57095.1|1662118_1662721_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
AVS57096.1|1662803_1663025_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57097.1|1663136_1663370_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
AVS57098.1|1663661_1663952_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57099.1|1664029_1664341_-	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
AVS57100.1|1664337_1664685_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
AVS57101.1|1664695_1665445_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AVS57102.1|1665447_1666431_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
AVS57103.1|1666515_1666890_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AVS57104.1|1666855_1667095_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
AVS57105.1|1667214_1667625_+	transcriptional regulator	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
AVS57106.1|1667674_1667935_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57107.1|1668584_1671512_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
1669155:1669170	attL	GTCCAGAACCTGCTGC	NA	NA	NA	NA
AVS57108.1|1671474_1672632_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
AVS57109.1|1672674_1672914_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AVS57110.1|1672954_1673239_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
AVS57111.1|1673216_1674446_-|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
AVS57112.1|1674797_1674914_-	transcriptional regulator	NA	NA	NA	NA	NA
AVS57113.1|1674943_1675423_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
AVS57114.1|1675419_1676376_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
AVS57115.1|1676375_1677026_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
AVS57116.1|1677057_1677633_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
AVS57117.1|1677793_1677973_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57118.1|1678057_1679680_+	L-aspartate oxidase	NA	NA	NA	NA	NA
AVS57119.1|1679664_1680402_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
AVS57120.1|1680532_1681867_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
AVS60057.1|1681884_1682784_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVS57121.1|1682886_1683474_+	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
AVS57122.1|1683535_1683919_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
AVS57123.1|1684237_1684927_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
AVS57124.1|1685042_1686080_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
1692740:1692755	attR	GTCCAGAACCTGCTGC	NA	NA	NA	NA
>prophage 8
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	1712890	1809473	4857558	capsid,tRNA,lysis,transposase,integrase,head,plate,portal,tail	Salmonella_phage(85.11%)	90	1779898:1779913	1807920:1807935
AVS57145.1|1712890_1713658_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AVS57146.1|1713702_1714251_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AVS60059.1|1714269_1714518_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AVS57147.1|1714831_1716193_-	signal recognition particle protein	NA	NA	NA	NA	NA
AVS57148.1|1716358_1717150_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
AVS57149.1|1717214_1718456_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AVS57150.1|1718576_1719182_+	cytoplasmic protein	NA	NA	NA	NA	NA
AVS57151.1|1719216_1719807_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AVS57152.1|1719803_1719998_-	molecular chaperone GrpE	NA	NA	NA	NA	NA
AVS57153.1|1719929_1720808_+	NAD(+) kinase	NA	NA	NA	NA	NA
AVS57154.1|1720893_1722555_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AVS57155.1|1722703_1723042_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AVS57156.1|1723207_1723498_-	RnfH family protein	NA	NA	NA	NA	NA
AVS57157.1|1723487_1723964_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AVS60060.1|1724113_1724596_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
AVS57158.1|1725209_1736684_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
AVS57159.1|1736748_1738158_+	type I secretion protein TolC	NA	NA	NA	NA	NA
AVS57160.1|1738154_1740335_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
AVS60061.1|1740342_1741506_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVS57161.1|1742057_1742276_-	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
AVS57162.1|1742344_1743445_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	98.1	3.4e-193
AVS57163.1|1743441_1743927_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	98.5	2.4e-66
AVS57164.1|1743923_1746731_-|tail	phage tail tape measure protein	tail	A0A1S6L010	Salmonella_phage	99.7	0.0e+00
AVS57165.1|1746723_1746843_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	97.4	8.8e-15
AVS57166.1|1746857_1747160_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	99.0	9.4e-45
AVS57167.1|1747214_1747730_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	98.8	7.9e-92
AVS57168.1|1747739_1748912_-|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	99.7	5.7e-223
AVS60062.1|1749014_1749572_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	97.8	8.0e-98
AVS57169.1|1749541_1750621_+	hypothetical protein	NA	A0A1B0V7G4	Salmonella_phage	92.1	5.4e-183
AVS57170.1|1750627_1751035_+|tail	phage tail protein	tail	A0A1B0V844	Salmonella_phage	84.4	2.2e-60
AVS57171.1|1751038_1751656_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	84.6	4.1e-95
AVS57172.1|1751625_1753200_-|tail	phage tail protein	tail	A0A1S6KZZ8	Salmonella_phage	60.7	2.1e-156
AVS57173.1|1753196_1753802_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.0	4.1e-116
AVS57174.1|1753794_1754703_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	99.0	7.7e-159
AVS57175.1|1754689_1755049_-|plate	baseplate assembly protein	plate	E5G6N7	Salmonella_phage	98.3	8.0e-59
AVS57176.1|1755045_1755624_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	98.4	3.3e-107
AVS57177.1|1755692_1756139_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	89.0	1.9e-65
AVS57178.1|1756131_1756563_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
AVS57179.1|1756658_1757087_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	95.0	2.6e-64
AVS57180.1|1757463_1757973_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.6	3.5e-92
AVS57181.1|1757953_1758169_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
AVS57182.1|1758172_1758376_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	98.5	1.1e-33
AVS57183.1|1758375_1758840_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	1.9e-84
AVS57184.1|1758933_1759587_-	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	98.6	4.6e-113
AVS57185.1|1759590_1760673_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	97.7	1.6e-190
AVS57186.1|1760689_1761523_-|capsid	capsid protein	capsid	E5G6M5	Salmonella_phage	100.0	3.1e-130
AVS57187.1|1761665_1763432_+	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	97.3	0.0e+00
AVS57188.1|1763431_1764472_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	93.0	2.4e-188
AVS57189.1|1764557_1766309_-	AIPR family protein	NA	NA	NA	NA	NA
AVS57190.1|1766522_1767254_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57191.1|1767313_1767619_-	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
AVS57192.1|1767557_1767746_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	100.0	1.4e-27
AVS57193.1|1767898_1770328_-	replication endonuclease from prophage-like region	NA	A0A1S6L028	Salmonella_phage	91.8	0.0e+00
AVS57194.1|1770318_1771176_-	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	80.4	2.7e-129
AVS57195.1|1771172_1771400_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	93.3	1.3e-35
AVS57196.1|1771399_1771633_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	2.0e-26
AVS57197.1|1771700_1772042_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	85.0	4.2e-49
AVS57198.1|1772261_1772720_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57199.1|1772667_1772901_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	59.1	3.6e-12
AVS57200.1|1772908_1773418_-	hypothetical protein	NA	A0A1S6L008	Salmonella_phage	92.9	5.1e-83
AVS57201.1|1773453_1773693_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.7	8.8e-38
AVS57202.1|1773809_1774442_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AVS57203.1|1774445_1775471_+|integrase	integrase	integrase	A0A1S6L016	Salmonella_phage	100.0	9.9e-203
AVS60063.1|1777091_1777685_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57204.1|1778074_1779268_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57205.1|1779602_1780430_-	hypothetical protein	NA	NA	NA	NA	NA
1779898:1779913	attL	ACAAACATATATTCTT	NA	NA	NA	NA
AVS57206.1|1780880_1781096_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
AVS57207.1|1781131_1783201_+	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	35.1	1.7e-73
AVS57208.1|1783703_1784987_+	ATPase	NA	NA	NA	NA	NA
AVS60064.1|1785031_1785850_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57209.1|1786003_1786360_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVS57210.1|1786454_1786739_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	64.7	5.4e-18
AVS57211.1|1786851_1787373_+	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
AVS57212.1|1787369_1787744_+	PTS sorbitol transporter	NA	NA	NA	NA	NA
AVS57213.1|1787740_1788721_+	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
AVS57214.1|1788731_1789745_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AVS57215.1|1790039_1791242_+	hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
AVS57216.1|1791315_1791951_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
AVS57217.1|1791974_1792541_-	6-phospho-3-hexuloisomerase	NA	NA	NA	NA	NA
AVS57218.1|1792537_1793380_-	cytoplasmic protein	NA	NA	NA	NA	NA
AVS57219.1|1793509_1795051_-	PTS glucose transporter subunit IIABC	NA	NA	NA	NA	NA
AVS57220.1|1795273_1796953_+	SgrR family transcriptional regulator	NA	NA	NA	NA	NA
AVS57221.1|1796952_1797135_+	hypothetical protein	NA	NA	NA	NA	NA
AVS57222.1|1798069_1798945_+|integrase	integrase	integrase	NA	NA	NA	NA
AVS57223.1|1799110_1800985_+	hypothetical protein	NA	NA	NA	NA	NA
AVS60065.1|1801244_1802528_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57224.1|1803105_1803702_+|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	91.3	2.6e-99
AVS57225.1|1805415_1806054_-	hypothetical protein	NA	NA	NA	NA	NA
AVS57226.1|1806050_1808033_-	DNA helicase	NA	NA	NA	NA	NA
1807920:1807935	attR	AAGAATATATGTTTGT	NA	NA	NA	NA
AVS57227.1|1808311_1809473_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.9	5.2e-51
>prophage 9
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	3315556	3335976	4857558	plate,tail	Burkholderia_phage(45.0%)	26	NA	NA
AVS58606.1|3315556_3316285_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
AVS58607.1|3316481_3316772_-	hypothetical protein	NA	NA	NA	NA	NA
AVS58608.1|3317020_3317476_-	hypothetical protein	NA	NA	NA	NA	NA
AVS58609.1|3317472_3318078_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
AVS58610.1|3318082_3319828_-|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
AVS58611.1|3319830_3320463_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
AVS58612.1|3320455_3321571_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
AVS58613.1|3321561_3321921_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AVS58614.1|3322084_3323632_-	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
AVS58615.1|3323631_3324561_-	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
AVS58616.1|3324557_3324920_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
AVS58617.1|3325247_3325970_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
AVS58618.1|3325979_3327023_-	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
AVS58619.1|3327010_3327220_-	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AVS58620.1|3327219_3328173_-	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
AVS58621.1|3328172_3330527_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
AVS58622.1|3330623_3330752_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AVS58623.1|3330711_3331029_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AVS58624.1|3331080_3331605_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AVS58625.1|3331604_3333032_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
AVS58626.1|3333021_3333219_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AVS58627.1|3333215_3333671_-	hypothetical protein	NA	NA	NA	NA	NA
AVS58628.1|3333830_3334145_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AVS58629.1|3334157_3334763_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	4.2e-60
AVS58630.1|3334765_3335053_-	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
AVS58631.1|3335628_3335976_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 10
CP028199	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 chromosome, complete genome	4857558	4716121	4800163	4857558	protease,holin,tRNA,lysis,transposase,integrase,terminase,portal,tail	Escherichia_phage(29.82%)	91	4710568:4710583	4808428:4808443
4710568:4710583	attL	GCTTTATTACCTTTTT	NA	NA	NA	NA
AVS59859.1|4716121_4716850_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.8	5.1e-28
AVS59860.1|4717079_4717595_-	lipoprotein	NA	NA	NA	NA	NA
AVS59861.1|4717690_4719016_-|integrase	integrase	integrase	Q20GI2	Phage_258-320	65.9	3.2e-169
AVS60182.1|4719043_4719286_-	excisionase	NA	G9L654	Escherichia_phage	62.8	1.8e-22
AVS59862.1|4719436_4719652_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59863.1|4719651_4719960_-	hypothetical protein	NA	A0A1B5FPC7	Escherichia_phage	80.8	2.1e-15
AVS59864.1|4719956_4720181_-	hypothetical protein	NA	A0A1B5FPG2	Escherichia_phage	65.3	1.9e-18
AVS59865.1|4720419_4720812_-	hypothetical protein	NA	F1C5A3	Cronobacter_phage	76.1	5.9e-23
AVS59866.1|4720766_4721162_-	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	74.6	6.7e-51
AVS59867.1|4721151_4721388_-	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	76.7	4.5e-26
AVS59868.1|4721387_4721804_-	hypothetical protein	NA	A0A1B5FPB3	Escherichia_phage	55.7	1.4e-27
AVS59869.1|4721727_4721937_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59870.1|4722124_4722310_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59871.1|4722306_4722501_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59872.1|4722493_4722811_-	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	51.0	3.0e-17
AVS59873.1|4722989_4723685_-	helix-turn-helix transcriptional regulator	NA	F1C5C2	Cronobacter_phage	67.5	7.4e-85
AVS59874.1|4723797_4724052_+	XRE family transcriptional regulator	NA	A0A2H4JEY0	uncultured_Caudovirales_phage	52.9	7.5e-11
AVS59875.1|4724014_4724311_+	hypothetical protein	NA	A0A1B5FPB9	Escherichia_phage	74.2	4.9e-30
AVS59876.1|4724551_4724920_+	hypothetical protein	NA	A0A1B5FPB1	Escherichia_phage	88.5	4.5e-57
AVS59877.1|4725032_4726661_+	ATP-dependent helicase	NA	A0A1B5FPA4	Escherichia_phage	83.4	7.1e-272
AVS59878.1|4726657_4727626_+	DNA primase	NA	A0A1B5FPA8	Escherichia_phage	95.3	1.9e-179
AVS59879.1|4727625_4728486_+	helix-turn-helix domain containing protein	NA	A0A1B5FPA6	Escherichia_phage	84.6	1.0e-136
AVS59880.1|4728482_4729298_+	antitermination protein	NA	A0A1B5FPA5	Escherichia_phage	72.3	3.7e-112
AVS59881.1|4729452_4729845_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59882.1|4730902_4731301_+	hypothetical protein	NA	NA	NA	NA	NA
AVS59883.1|4731890_4732235_+|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
AVS59884.1|4732237_4732852_+	endolysin	NA	Q8HA86	Salmonella_phage	93.1	1.4e-108
AVS59885.1|4732848_4733334_+|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	93.8	5.7e-76
AVS59886.1|4733625_4733817_-	hypothetical protein	NA	NA	NA	NA	NA
AVS60183.1|4733892_4734114_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59887.1|4734168_4734660_+	DNA breaking-rejoining protein	NA	Q9EYD0	Enterobacteria_phage	57.5	2.6e-44
AVS59888.1|4734646_4736755_+|terminase	phage terminase large subunit family protein	terminase	Q9EYD1	Enterobacteria_phage	70.6	1.5e-293
AVS59889.1|4736751_4736958_+	primosomal replication protein PriB/PriC domain protein	NA	A5LH28	Enterobacteria_phage	48.6	1.4e-07
AVS59890.1|4736954_4738490_+|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	63.1	3.7e-177
AVS59891.1|4738407_4740528_+	peptidase S14	NA	A5LH30	Enterobacteria_phage	72.1	1.3e-276
AVS59892.1|4740616_4740940_+	DUF2190 domain-containing protein	NA	K7PLV6	Enterobacteria_phage	63.2	1.0e-28
AVS59893.1|4740932_4741208_+	DNA breaking-rejoining protein	NA	NA	NA	NA	NA
AVS59894.1|4741211_4741796_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	77.1	4.5e-75
AVS59895.1|4741792_4742194_+|tail	phage tail protein	tail	A0A291AWY2	Escherichia_phage	66.9	4.9e-49
AVS59896.1|4742204_4742948_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	75.6	6.2e-98
AVS59897.1|4742992_4743397_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	54.1	6.3e-28
AVS59898.1|4743414_4743732_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	65.1	1.6e-31
AVS59899.1|4743703_4746865_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	55.7	4.3e-257
AVS59900.1|4746864_4747194_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	68.5	2.2e-39
AVS59901.1|4747320_4747839_+	Ail/OmpX	NA	H6WZM8	Escherichia_phage	30.2	3.1e-11
AVS59902.1|4747970_4748666_+|tail	phage minor tail protein L	tail	Q687F1	Enterobacteria_phage	71.4	3.2e-96
AVS60184.1|4748677_4749412_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	77.4	2.7e-114
AVS59903.1|4749309_4749987_+|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	67.6	3.0e-67
AVS59904.1|4750040_4750565_-	superoxide dismutase [Cu-Zn] SodC2	NA	Q9MC02	Salmonella_phage	100.0	1.3e-97
AVS59905.1|4750658_4754105_+	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	69.8	0.0e+00
AVS59906.1|4754148_4756521_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	64.2	5.8e-89
AVS59907.1|4756520_4757096_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.8	5.2e-92
AVS59908.1|4757166_4758405_-	sialidase	NA	NA	NA	NA	NA
AVS59909.1|4759238_4759460_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
AVS59910.1|4760445_4760769_+	hypothetical protein	NA	NA	NA	NA	NA
AVS59911.1|4760765_4761596_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.7	1.8e-08
AVS59912.1|4761592_4762606_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AVS59913.1|4762701_4764135_-	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
AVS59914.1|4764145_4765147_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
AVS59915.1|4765185_4766904_-	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.4	1.7e-29
AVS59916.1|4767061_4768030_-	NADH oxidoreductase	NA	NA	NA	NA	NA
AVS59917.1|4768041_4769694_-	hydroxylamine reductase	NA	NA	NA	NA	NA
AVS59918.1|4769837_4770737_-	lysine exporter LysO family protein	NA	NA	NA	NA	NA
AVS59919.1|4770714_4770903_+	hypothetical protein	NA	NA	NA	NA	NA
AVS59920.1|4770938_4772597_+	ATP-dependent endonuclease	NA	NA	NA	NA	NA
AVS59921.1|4772593_4773562_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AVS59922.1|4773689_4774808_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
AVS59923.1|4774804_4776751_+	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
AVS59924.1|4776731_4776926_+	hypothetical protein	NA	NA	NA	NA	NA
AVS59925.1|4776880_4777102_-	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AVS59926.1|4777425_4777746_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AVS59927.1|4777776_4780053_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
AVS59928.1|4780105_4780288_+	hypothetical protein	NA	NA	NA	NA	NA
AVS59929.1|4780244_4780703_+|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
AVS59930.1|4781165_4782421_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
AVS59931.1|4782757_4783435_-	hydrolase	NA	NA	NA	NA	NA
AVS59932.1|4783454_4784315_-	pirin family protein	NA	NA	NA	NA	NA
AVS59933.1|4784423_4785335_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVS59934.1|4785425_4785644_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AVS59935.1|4785571_4785955_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59936.1|4785955_4786660_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AVS59937.1|4786704_4788426_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	23.5	8.4e-13
AVS59938.1|4788426_4790193_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	25.1	6.0e-22
AVS59939.1|4790306_4791275_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	45.5	1.1e-62
AVS60185.1|4791616_4791892_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59940.1|4791820_4792315_+	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
AVS60186.1|4792449_4796505_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.9e-88
AVS60187.1|4796647_4797259_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AVS59941.1|4797268_4798612_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.9	1.6e-80
AVS60188.1|4798608_4798827_-	hypothetical protein	NA	NA	NA	NA	NA
AVS59942.1|4798870_4800163_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.5	8.6e-95
4808428:4808443	attR	AAAAAGGTAATAAAGC	NA	NA	NA	NA
>prophage 1
CP028200	Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 plasmid pGMI14-001, complete sequence	93933	13398	22694	93933	transposase	Escherichia_phage(28.57%)	12	NA	NA
AVS60208.1|13398_14079_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.6e-28
AVS60209.1|14223_14412_-	hypothetical protein	NA	NA	NA	NA	NA
AVS60210.1|14460_14817_-	hypothetical protein	NA	NA	NA	NA	NA
AVS60211.1|14809_15280_-	hypothetical protein	NA	NA	NA	NA	NA
AVS60212.1|15790_16213_+	protein SamA	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
AVS60213.1|16212_17487_+	DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	64.5	3.0e-156
AVS60214.1|17568_18546_-	chromosome partitioning protein ParB	NA	A0A1B0V750	Salmonella_phage	53.2	5.2e-84
AVS60215.1|18542_19748_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
AVS60216.1|20162_21104_+|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
AVS60217.1|21135_21702_-	DUF2913 domain-containing protein	NA	NA	NA	NA	NA
AVS60218.1|21758_22094_-	hypothetical protein	NA	NA	NA	NA	NA
AVS60296.1|22277_22694_-	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
