assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003030225.1_ASM303022v1	CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	1	616275-616362	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	30	1	11	616305-616332|616305-616332|616305-616332|616305-616332|616305-616332|616305-616332|616305-616332|616305-616332|616305-616332|616305-616332|616305-616332	CP028189.1_33010-33037|CP028189.1_33183-33210|CP028189.1_134238-134211|CP028189.1_218047-218020|CP028189.1_437084-437111|CP028189.1_933602-933629|CP028189.1_944295-944322|CP028189.1_2080184-2080157|CP028189.1_2530469-2530496|CP028189.1_2537853-2537880|CP028189.1_2621275-2621248	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|228aa|up_9|CP028189.1_605455_606139_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|CP028189.1_606382_606559_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|CP028189.1_606851_608198_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|CP028189.1_608204_608957_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|CP028189.1_608958_609897_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|CP028189.1_609900_611040_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|CP028189.1_611175_613008_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|CP028189.1_613076_613703_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|CP028189.1_613734_614712_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|CP028189.1_614812_615937_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|CP028189.1_616499_618323_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|CP028189.1_618668_618920_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|CP028189.1_618964_619939_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|CP028189.1_619995_622143_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|CP028189.1_622201_622663_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|CP028189.1_622754_623441_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|CP028189.1_623480_624197_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|CP028189.1_624199_624553_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|CP028189.1_624553_625138_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|CP028189.1_625127_625697_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCA_003030225.1_ASM303022v1	CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	3	899496-899623	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_9|CP028189.1_891420_891816_-,NA|55aa|up_8|CP028189.1_892123_892288_+,NA|69aa|up_7|CP028189.1_892380_892587_+,NA|51aa|up_6|CP028189.1_892651_892804_-,NA|31aa|down_5|CP028189.1_912413_912506_-	NA|132aa|up_9|CP028189.1_891420_891816_-	NA	NA|55aa|up_8|CP028189.1_892123_892288_+	NA	NA|69aa|up_7|CP028189.1_892380_892587_+	NA	NA|51aa|up_6|CP028189.1_892651_892804_-	NA	NA|200aa|up_5|CP028189.1_892828_893428_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|CP028189.1_893586_894057_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|CP028189.1_894061_895204_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|CP028189.1_895339_896068_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|CP028189.1_896054_897512_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|CP028189.1_897769_898831_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|CP028189.1_907612_908059_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|CP028189.1_908155_909106_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|CP028189.1_909111_909567_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|CP028189.1_909647_910937_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|CP028189.1_911229_912324_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_5|CP028189.1_912413_912506_-	NA	NA|579aa|down_6|CP028189.1_912514_914251_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_7|CP028189.1_914541_915084_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_8|CP028189.1_915385_916423_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|CP028189.1_916574_917552_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCA_003030225.1_ASM303022v1	CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	4	1126511-1126600	4	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|CP028189.1_1121382_1121613_-,NA|364aa|up_0|CP028189.1_1125402_1126494_+,NA|35aa|down_0|CP028189.1_1126935_1127040_-,NA|61aa|down_1|CP028189.1_1127472_1127655_-,NA|53aa|down_2|CP028189.1_1127719_1127878_+,NA|31aa|down_3|CP028189.1_1128313_1128406_+	NA|237aa|up_9|CP028189.1_1116993_1117704_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP028189.1_1117824_1118268_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP028189.1_1118467_1118881_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP028189.1_1119337_1120711_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP028189.1_1121382_1121613_-	NA	NA|313aa|up_4|CP028189.1_1121643_1122582_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP028189.1_1123017_1123683_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP028189.1_1123834_1124155_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP028189.1_1124156_1125137_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP028189.1_1125402_1126494_+	NA	NA|35aa|down_0|CP028189.1_1126935_1127040_-	NA	NA|61aa|down_1|CP028189.1_1127472_1127655_-	NA	NA|53aa|down_2|CP028189.1_1127719_1127878_+	NA	NA|31aa|down_3|CP028189.1_1128313_1128406_+	NA	NA|286aa|down_4|CP028189.1_1128535_1129393_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP028189.1_1129460_1130243_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP028189.1_1130474_1132280_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|CP028189.1_1132960_1134499_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|CP028189.1_1134533_1136666_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|CP028189.1_1136677_1137112_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_003030225.1_ASM303022v1	CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	7	2483902-2483984	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	1	1	2483929-2483957	CP028189.1_2130016-2129988	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|CP028189.1_2470558_2470765_+,NA|34aa|down_1|CP028189.1_2485440_2485542_+,NA|82aa|down_3|CP028189.1_2487190_2487436_-,NA|89aa|down_6|CP028189.1_2489236_2489503_+	NA|69aa|up_9|CP028189.1_2470558_2470765_+	NA	NA|237aa|up_8|CP028189.1_2470852_2471563_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP028189.1_2471546_2472551_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP028189.1_2473024_2474965_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|CP028189.1_2475235_2477119_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP028189.1_2477130_2478912_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP028189.1_2479133_2480111_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP028189.1_2480103_2481618_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP028189.1_2481857_2482916_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP028189.1_2483210_2483753_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP028189.1_2484432_2485350_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|CP028189.1_2485440_2485542_+	NA	NA|502aa|down_2|CP028189.1_2485619_2487125_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|CP028189.1_2487190_2487436_-	NA	NA|167aa|down_4|CP028189.1_2487465_2487966_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|CP028189.1_2487985_2488852_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|CP028189.1_2489236_2489503_+	NA	NA|133aa|down_7|CP028189.1_2489652_2490051_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|CP028189.1_2490013_2492119_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|CP028189.1_2492236_2493208_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
