The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	2719423	34703	43176	2719423		Synechococcus_phage(33.33%)	9	NA	NA
AVS39877.1|34703_35186_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
AVS39878.1|35172_36297_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVS39879.1|36300_37005_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AVS39880.1|37004_37268_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVS39881.1|37269_37941_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVS39882.1|37933_40123_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AVS39883.1|40101_41586_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AVS39884.1|41578_42607_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AVS39885.1|42609_43176_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 2
CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	2719423	297767	313774	2719423	terminase,integrase,head,portal	Staphylococcus_phage(59.09%)	26	291491:291508	315761:315778
291491:291508	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
AVS40125.1|297767_298895_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
AVS40126.1|298947_299643_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	1.4e-06
AVS40127.1|299654_300038_-	hypothetical protein	NA	NA	NA	NA	NA
AVS40128.1|300184_300577_-	transcriptional regulator	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
AVS40129.1|300744_300963_+	DUF739 domain-containing protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
AVS40130.1|300989_301265_+	hypothetical protein	NA	NA	NA	NA	NA
AVS40131.1|301688_301895_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
AVS40132.1|301955_302639_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
AVS40133.1|302737_302899_+	DUF1270 domain-containing protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
AVS40134.1|302985_303303_+	DUF2482 domain-containing protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
AVS40135.1|303292_303559_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
AVS40136.1|303563_304100_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
AVS40137.1|304100_304880_+	chromosomal replication initiator DnaA	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
AVS42383.1|304960_305455_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	93.4	1.4e-82
AVS40138.1|305467_306370_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
AVS40139.1|306370_306661_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
AVS40140.1|306675_306834_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
AVS40141.1|306839_307151_+	hypothetical protein	NA	NA	NA	NA	NA
AVS40142.1|307143_307674_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	2.3e-22
AVS40143.1|307908_308373_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
AVS40144.1|308373_308607_+	hypothetical protein	NA	NA	NA	NA	NA
AVS40145.1|308649_309138_+	RNA polymerase subunit sigma-70	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
AVS40146.1|309290_309719_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
AVS40147.1|309705_310980_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
AVS40148.1|310992_312441_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	3.7e-195
AVS40149.1|312430_313774_+|head	phage head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	56.8	1.3e-138
315761:315778	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 3
CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	2719423	587860	596190	2719423	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AVS40398.1|587860_588646_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	1.0e-18
AVS40399.1|588771_589662_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
AVS40400.1|589671_591018_-	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AVS40401.1|591131_592232_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AVS40402.1|592234_592912_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AVS40403.1|593042_594149_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AVS40404.1|594372_596190_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 4
CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	2719423	798961	844679	2719423	protease,tRNA	Staphylococcus_phage(91.67%)	45	NA	NA
AVS40592.1|798961_805522_-	peptidase	NA	A0A2H4PQU6	Staphylococcus_phage	96.4	4.3e-299
AVS40593.1|805847_806159_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AVS40594.1|806180_808598_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
AVS40595.1|808885_810067_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AVS40596.1|810176_811130_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AVS40597.1|811126_811690_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AVS40598.1|811809_812211_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVS40599.1|812781_813609_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVS40600.1|813611_813731_-	hypothetical protein	NA	NA	NA	NA	NA
AVS40601.1|813742_813934_-	hypothetical protein	NA	NA	NA	NA	NA
AVS40602.1|813842_814844_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
AVS40603.1|814965_815430_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AVS40604.1|815442_816624_-	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
AVS40605.1|816634_817267_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
AVS42396.1|817273_818305_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
AVS40606.1|818797_820300_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AVS40607.1|820822_821137_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AVS40608.1|821136_822429_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AVS40609.1|822446_822842_+	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AVS40610.1|823136_823991_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AVS40611.1|824266_824491_-	hypothetical protein	NA	NA	NA	NA	NA
AVS40612.1|824689_825160_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AVS40613.1|825272_825716_+	competence protein ComK	NA	NA	NA	NA	NA
AVS40614.1|825702_826146_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AVS40615.1|826441_827077_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS40616.1|827516_828230_-	transaldolase	NA	M1PR54	Cyanophage	34.8	1.2e-18
AVS40617.1|828489_828792_+	hypothetical protein	NA	NA	NA	NA	NA
AVS40618.1|829047_829413_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AVS40619.1|829409_829763_+	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
AVS40620.1|829954_830134_+	hypothetical protein	NA	NA	NA	NA	NA
AVS40621.1|830145_830979_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AVS40622.1|831190_832099_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AVS40623.1|832223_833417_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AVS40624.1|833788_835381_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AVS42397.1|835758_836505_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	2.9e-143
AVS40625.1|836509_836983_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	1.4e-82
AVS40626.1|837048_837306_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
AVS40627.1|837302_838304_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
AVS40628.1|838308_839787_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
AVS42398.1|839945_840401_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
AVS40629.1|840703_841354_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
AVS40630.1|841434_842430_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
AVS40631.1|842503_843130_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
AVS40632.1|843129_843900_+	exotoxin	NA	A0EX09	Staphylococcus_phage	33.5	4.3e-25
AVS40633.1|843926_844679_+	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
>prophage 5
CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	2719423	2462066	2469885	2719423		Hokovirus(16.67%)	10	NA	NA
AVS42124.1|2462066_2463122_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
AVS42125.1|2463121_2463808_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVS42126.1|2463782_2464256_-	DoxX family protein	NA	NA	NA	NA	NA
AVS42127.1|2464596_2465037_-	hypothetical protein	NA	NA	NA	NA	NA
AVS42128.1|2465316_2465901_-	hypothetical protein	NA	NA	NA	NA	NA
AVS42129.1|2465999_2466713_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AVS42130.1|2466716_2467136_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AVS42131.1|2467137_2467806_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AVS42132.1|2468156_2468750_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AVS42133.1|2468733_2469885_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 6
CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	2719423	2481857	2496588	2719423		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
AVS42143.1|2481857_2482916_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AVS42144.1|2483210_2483753_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AVS42145.1|2483924_2484020_+	hypothetical protein	NA	NA	NA	NA	NA
AVS42146.1|2484432_2485350_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AVS42147.1|2485440_2485542_+	hypothetical protein	NA	NA	NA	NA	NA
AVS42148.1|2485619_2487125_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVS42149.1|2487190_2487436_-	hypothetical protein	NA	NA	NA	NA	NA
AVS42150.1|2487465_2487966_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AVS42151.1|2487985_2488852_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVS42152.1|2489236_2489503_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AVS42153.1|2489652_2490051_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVS42154.1|2490013_2492119_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
AVS42155.1|2492236_2493208_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVS42156.1|2493340_2493445_+	hypothetical protein	NA	NA	NA	NA	NA
AVS42470.1|2493915_2494887_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	9.5e-139
AVS42157.1|2494873_2495830_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AVS42158.1|2495826_2496588_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
