The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028187	Campylobacter coli strain CFSAN054106 chromosome, complete genome	1894971	933166	969497	1894971	capsid,tail,plate,bacteriocin,integrase	Campylobacter_phage(57.14%)	52	932320:932335	943951:943966
932320:932335	attL	ATTATCAAAATTTAAA	NA	NA	NA	NA
AVS38837.1|933166_935239_+|integrase	integrase	integrase	A0A0M4U788	Ralstonia_phage	26.7	3.6e-10
AVS38838.1|935409_936333_+|bacteriocin	bacteriocin	bacteriocin	A0A0N7ACA6	Bacillus_phage	25.6	2.2e-15
AVS38839.1|936335_936527_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVS38840.1|936523_936709_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38841.1|936765_937107_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38842.1|937213_937699_+	host-nuclease inhibitor protein Gam	NA	A0A2H4JE65	uncultured_Caudovirales_phage	34.8	9.9e-20
AVS38843.1|937695_937881_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38844.1|937944_938217_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38845.1|938213_938639_+	hypothetical protein	NA	A0A2R3ZY25	Campylobacter_phage	40.1	4.8e-18
AVS38846.1|938747_939710_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38847.1|939706_939976_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38848.1|939975_940668_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38849.1|940664_941114_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38850.1|941160_941436_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38851.1|942190_942475_+	DNA-binding protein	NA	NA	NA	NA	NA
AVS38852.1|942471_943449_-|tail	phage tail protein	tail	NA	NA	NA	NA
AVS38853.1|943442_943634_-|tail	phage tail protein	tail	NA	NA	NA	NA
AVS38854.1|943626_944001_-|tail	phage tail protein	tail	NA	NA	NA	NA
943951:943966	attR	ATTATCAAAATTTAAA	NA	NA	NA	NA
AVS38855.1|944132_945371_-	hypothetical protein	NA	A0A0M4UTA3	Ralstonia_phage	33.0	1.4e-25
AVS38856.1|945373_946744_-	hypothetical protein	NA	A0A2H4JHL1	uncultured_Caudovirales_phage	26.3	1.3e-16
AVS38857.1|946753_948424_-	hypothetical protein	NA	A0A0A1IW02	Pseudomonas_phage	41.1	4.4e-91
AVS38858.1|948423_949023_-	DUF1804 domain-containing protein	NA	NA	NA	NA	NA
AVS38859.1|949015_949474_-	hypothetical protein	NA	NA	NA	NA	NA
AVS38860.1|949589_950567_-|capsid	minor capsid protein E	capsid	R9TRN2	Rhizobium_phage	23.7	3.0e-07
AVS38861.1|950569_951112_-	hypothetical protein	NA	NA	NA	NA	NA
AVS38862.1|951114_951930_-	hypothetical protein	NA	A0A2H4JAW3	uncultured_Caudovirales_phage	47.6	6.5e-24
AVS38863.1|951931_952366_-	hypothetical protein	NA	NA	NA	NA	NA
AVS38864.1|952513_952903_+	DUF882 domain-containing protein	NA	A0A2I7R2R3	Vibrio_phage	43.3	1.1e-21
AVS38865.1|952913_953255_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38866.1|953251_953500_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38867.1|953611_953926_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38868.1|953925_954423_+|plate	phage baseplate assembly protein V	plate	F1BUP5	Erwinia_phage	29.0	3.2e-05
AVS38869.1|954422_954635_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38870.1|954631_954922_+|plate	baseplate assembly protein	plate	Q75QM0	Wolbachia_phage	48.7	5.9e-12
AVS38871.1|954918_956085_+|plate	baseplate assembly protein	plate	D5LGZ3	Escherichia_phage	42.2	1.4e-08
AVS38872.1|956081_956702_+|tail	phage tail protein I	tail	A7YGG0	Campylobacter_phage	94.0	2.2e-56
AVS38873.1|956701_957793_+|tail	phage tail protein	tail	A7YGA7	Campylobacter_phage	88.8	2.8e-78
AVS38874.1|957802_958438_+	hypothetical protein	NA	NA	NA	NA	NA
AVS38875.1|958437_960195_+	radical SAM protein	NA	NA	NA	NA	NA
AVS38876.1|960187_960574_+	DUF1353 domain-containing protein	NA	A7YGM3	Campylobacter_phage	87.6	4.6e-60
AVS38877.1|960570_961584_+	hypothetical protein	NA	A7YGY4	Campylobacter_phage	97.9	1.0e-188
AVS38878.1|961594_962788_+|tail	phage tail protein	tail	A7YGY2	Campylobacter_phage	99.2	3.1e-200
AVS38879.1|962811_963321_+|tail	phage tail protein	tail	A7YGZ4	Campylobacter_phage	98.2	6.2e-89
AVS38880.1|963424_963664_+|tail	phage tail assembly protein	tail	A7YG75	Campylobacter_phage	89.9	1.5e-08
AVS38881.1|963775_964081_-	hypothetical protein	NA	A7YG88	Campylobacter_phage	90.1	1.9e-32
AVS38882.1|964122_966456_+|tail	phage tail tape measure protein	tail	A7YGE8	Campylobacter_phage	89.7	0.0e+00
AVS38883.1|966459_966948_+	virion morphogenesis protein	NA	A7YGZ0	Campylobacter_phage	90.7	8.6e-80
AVS38884.1|967052_967868_+	DNA adenine methylase	NA	A7YGG5	Campylobacter_phage	94.5	2.8e-144
AVS38885.1|967895_968183_-	hypothetical protein	NA	A7YGG4	Campylobacter_phage	97.9	1.6e-46
AVS38886.1|968262_968457_-	hypothetical protein	NA	A7YG72	Campylobacter_phage	96.9	1.1e-27
AVS38887.1|968466_968787_-	hypothetical protein	NA	A7YG71	Campylobacter_phage	97.2	1.6e-50
AVS38888.1|968867_969497_-	peptidase	NA	A7YG70	Campylobacter_phage	98.2	4.8e-59
>prophage 2
CP028187	Campylobacter coli strain CFSAN054106 chromosome, complete genome	1894971	1332972	1348498	1894971		Catovirus(20.0%)	17	NA	NA
AVS39221.1|1332972_1335336_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	29.9	1.2e-78
AVS39222.1|1335328_1335529_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AVS39223.1|1335558_1335858_-	cytochrome C	NA	NA	NA	NA	NA
AVS39224.1|1335975_1336497_+	D,D-heptose 1,7-bisphosphate phosphatase	NA	NA	NA	NA	NA
AVS39225.1|1336493_1337447_+	ADP-glyceromanno-heptose 6-epimerase	NA	A0A1V0SKV4	Klosneuvirus	28.8	1.3e-23
AVS39226.1|1337439_1338825_+	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A0K0KVL9	Prochlorococcus_phage	43.8	7.2e-23
AVS39227.1|1338821_1339382_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	36.7	5.3e-17
AVS39228.1|1339357_1340323_-	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA	NA
AVS39229.1|1340381_1341218_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	35.5	5.5e-10
AVS39230.1|1341227_1342106_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	62.5	8.4e-102
AVS39231.1|1342109_1343132_+	dTDP-glucose 4,6-dehydratase	NA	H9NC62	Sphingomonas_phage	45.8	5.6e-73
AVS39232.1|1343184_1343601_+	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
AVS39233.1|1343590_1344037_+	dTDP-6-deoxy-3,4-keto-hexulose isomerase	NA	NA	NA	NA	NA
AVS39234.1|1344120_1345242_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	28.1	2.2e-22
AVS39235.1|1345234_1346194_+	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	29.9	1.3e-10
AVS39236.1|1346190_1347411_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AVS39237.1|1347403_1348498_+	aminotransferase	NA	A0A2K9L0G1	Tupanvirus	33.3	5.7e-39
>prophage 3
CP028187	Campylobacter coli strain CFSAN054106 chromosome, complete genome	1894971	1525955	1533530	1894971		Campylobacter_phage(85.71%)	12	NA	NA
AVS39401.1|1525955_1526153_-	hypothetical protein	NA	X2KPN2	Campylobacter_phage	95.4	4.9e-26
AVS39402.1|1526106_1526490_-	hypothetical protein	NA	X2KX19	Campylobacter_phage	90.9	2.8e-46
AVS39403.1|1526721_1527183_-	hypothetical protein	NA	X2KRD2	Campylobacter_phage	92.2	5.2e-79
AVS39404.1|1527172_1527646_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39405.1|1527642_1528023_-	hypothetical protein	NA	X2KXD5	Campylobacter_phage	93.6	2.7e-57
AVS39406.1|1528019_1528652_-	hypothetical protein	NA	X2KRD7	Campylobacter_phage	85.7	4.8e-83
AVS39407.1|1528664_1529054_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39408.1|1529055_1530249_-	hypothetical protein	NA	X2KLU0	Campylobacter_phage	73.6	4.4e-29
AVS39409.1|1530252_1531914_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39410.1|1531916_1532111_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39411.1|1532091_1532496_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39412.1|1532495_1533530_-	hypothetical protein	NA	A0A2I7SBK1	Pseudomonas_phage	30.5	2.0e-17
>prophage 4
CP028187	Campylobacter coli strain CFSAN054106 chromosome, complete genome	1894971	1554338	1566268	1894971	integrase,transposase	Campylobacter_phage(33.33%)	18	1552743:1552758	1566567:1566582
1552743:1552758	attL	AAAGAAATAAAAAGCC	NA	NA	NA	NA
AVS39438.1|1554338_1555217_+	hypothetical protein	NA	A0A0M4S6X1	Salmonella_phage	48.2	2.3e-59
AVS39439.1|1555520_1556201_+	phage antirepressor Ant	NA	A0A0M3LQ72	Mannheimia_phage	48.1	3.3e-21
AVS39440.1|1556204_1556939_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39441.1|1556938_1557634_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39442.1|1557614_1557893_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39443.1|1557873_1558635_+	site-specific DNA-methyltransferase	NA	X2KXI8	Campylobacter_phage	83.4	8.6e-119
AVS39444.1|1558637_1559081_+	hypothetical protein	NA	I7JC19	Campylobacter_virus	33.3	1.3e-10
AVS39445.1|1559162_1560002_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39446.1|1560011_1560305_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39447.1|1560314_1560563_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39804.1|1560640_1561282_+|transposase	IS607 family transposase	transposase	A0A1S5RGS9	Helicobacter_phage	86.8	1.2e-97
AVS39805.1|1561289_1562558_+|transposase	transposase	transposase	A0A1S5RFS3	Helicobacter_phage	63.1	2.4e-142
AVS39448.1|1562608_1562986_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39449.1|1562999_1563239_+	transcriptional regulator	NA	X2KQ78	Campylobacter_phage	59.5	2.0e-13
AVS39806.1|1563709_1564366_+	phage antirepressor Ant	NA	X2KM03	Campylobacter_phage	48.4	3.4e-39
AVS39450.1|1564367_1564910_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39807.1|1564902_1565142_+	DNA-binding protein	NA	NA	NA	NA	NA
AVS39451.1|1565068_1566268_-|integrase	site-specific integrase	integrase	A0A1P8DTG6	Proteus_phage	25.6	1.8e-09
1566567:1566582	attR	AAAGAAATAAAAAGCC	NA	NA	NA	NA
>prophage 5
CP028187	Campylobacter coli strain CFSAN054106 chromosome, complete genome	1894971	1838941	1894925	1894971	protease,tail,plate,holin,tRNA	Campylobacter_phage(62.5%)	63	NA	NA
AVS39705.1|1838941_1839712_+|holin	phosphocholine cytidylyltransferase family protein	holin	NA	NA	NA	NA
AVS39706.1|1839695_1841534_-	primosomal protein N'	NA	NA	NA	NA	NA
AVS39707.1|1841530_1841977_-	type II secretion system protein	NA	NA	NA	NA	NA
AVS39708.1|1841973_1842219_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39709.1|1842208_1842439_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39710.1|1842592_1844566_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
AVS39711.1|1844600_1846025_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
AVS39712.1|1846212_1847463_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AVS39713.1|1847462_1848191_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.6	5.3e-25
AVS39714.1|1848183_1848591_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AVS39715.1|1848587_1848833_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
AVS39716.1|1848972_1850193_+	argininosuccinate synthase	NA	NA	NA	NA	NA
AVS39717.1|1850207_1850651_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AVS39718.1|1850650_1851193_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AVS39719.1|1851189_1852509_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	28.4	1.4e-39
AVS39720.1|1852505_1853381_+	GTPase Era	NA	NA	NA	NA	NA
AVS39721.1|1853370_1854444_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39722.1|1854443_1855001_+	hypothetical protein	NA	NA	NA	NA	NA
AVS39723.1|1855085_1856873_+	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	47.2	4.0e-159
AVS39724.1|1856905_1858741_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AVS39725.1|1858740_1859235_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39726.1|1859236_1859827_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
AVS39812.1|1859823_1860255_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AVS39727.1|1860266_1860779_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39728.1|1860769_1861258_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	NA	NA	NA	NA
AVS39729.1|1861261_1862101_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	49.1	1.3e-22
AVS39730.1|1862045_1863179_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	31.5	5.0e-06
AVS39731.1|1863181_1863994_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AVS39732.1|1863984_1865229_-	diguanylate cyclase response regulator	NA	NA	NA	NA	NA
AVS39733.1|1865316_1866840_-	DNA recombination protein RecN	NA	NA	NA	NA	NA
AVS39734.1|1866839_1867700_-	NAD(+) kinase	NA	NA	NA	NA	NA
AVS39735.1|1867792_1869544_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AVS39736.1|1869540_1870116_+	adenylate kinase	NA	NA	NA	NA	NA
AVS39737.1|1870125_1870644_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	48.6	6.0e-39
AVS39738.1|1870691_1871192_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AVS39739.1|1871414_1872290_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
AVS39740.1|1872279_1872660_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AVS39741.1|1872656_1873427_-	DNA-processing protein DprA	NA	NA	NA	NA	NA
AVS39742.1|1873416_1874469_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39743.1|1874471_1875494_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AVS39744.1|1875616_1877551_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	30.1	3.1e-40
AVS39745.1|1877543_1878509_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AVS39746.1|1878864_1879098_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39747.1|1879353_1879983_+	peptidase	NA	A7YG70	Campylobacter_phage	98.2	4.8e-59
AVS39748.1|1880063_1880384_+	hypothetical protein	NA	A7YG71	Campylobacter_phage	97.2	1.6e-50
AVS39749.1|1880393_1880588_+	hypothetical protein	NA	A7YG72	Campylobacter_phage	96.9	1.1e-27
AVS39750.1|1880667_1880955_+	hypothetical protein	NA	A7YGG4	Campylobacter_phage	97.9	1.6e-46
AVS39751.1|1880982_1881798_-	DNA adenine methylase	NA	A7YGG5	Campylobacter_phage	94.1	6.3e-144
AVS39752.1|1881902_1882391_-	virion morphogenesis protein	NA	A7YGZ0	Campylobacter_phage	90.7	8.6e-80
AVS39753.1|1882394_1884728_-|tail	phage tail tape measure protein	tail	A7YGE8	Campylobacter_phage	89.7	0.0e+00
AVS39754.1|1884769_1885075_+	hypothetical protein	NA	A7YG88	Campylobacter_phage	90.1	1.9e-32
AVS39755.1|1885186_1885426_-|tail	phage tail assembly protein	tail	A7YG75	Campylobacter_phage	89.9	1.5e-08
AVS39756.1|1885529_1886039_-|tail	phage tail protein	tail	A7YGZ4	Campylobacter_phage	98.2	6.2e-89
AVS39757.1|1886062_1887256_-|tail	phage tail protein	tail	A7YGY2	Campylobacter_phage	99.2	3.1e-200
AVS39758.1|1887266_1888280_-	hypothetical protein	NA	A7YGY4	Campylobacter_phage	97.9	1.0e-188
AVS39759.1|1888276_1888663_-	DUF1353 domain-containing protein	NA	A7YGM3	Campylobacter_phage	87.6	4.6e-60
AVS39760.1|1888655_1890413_-	radical SAM protein	NA	NA	NA	NA	NA
AVS39761.1|1890412_1891048_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39762.1|1891057_1892149_-|tail	phage tail protein	tail	A7YGA7	Campylobacter_phage	88.8	2.8e-78
AVS39763.1|1892148_1892769_-|tail	phage tail protein I	tail	A7YGG0	Campylobacter_phage	94.0	2.2e-56
AVS39764.1|1892765_1893932_-|plate	baseplate assembly protein	plate	D5LGZ3	Escherichia_phage	42.2	1.4e-08
AVS39765.1|1894227_1894428_-	hypothetical protein	NA	NA	NA	NA	NA
AVS39766.1|1894427_1894925_-|plate	phage baseplate assembly protein V	plate	F1BUP5	Erwinia_phage	29.0	3.2e-05
