The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	130149	136674	3062735	tail	Listeria_phage(33.33%)	10	NA	NA
AVS30183.1|130149_130602_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
AVS30184.1|130607_130943_-	XRE family transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
AVS30185.1|131159_131588_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30186.1|131599_132016_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	3.8e-20
AVS30187.1|132293_132683_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
AVS30188.1|132695_133208_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
AVS30189.1|133255_133558_+	segregation and condensation protein B	NA	NA	NA	NA	NA
AVS30190.1|133599_134004_+	phenylalanine racemase	NA	NA	NA	NA	NA
AVS30191.1|133990_135859_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
AVS30192.1|135855_136674_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	9.4e-39
>prophage 2
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	684038	741009	3062735	portal,holin,terminase,capsid,tail,head,integrase,protease,transposase	Listeria_phage(55.88%)	68	717047:717070	719845:719868
AVS30684.1|684038_685190_-|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	46.3	4.5e-87
AVS30685.1|685211_685925_-	hypothetical protein	NA	NA	NA	NA	NA
AVS30686.1|685979_686480_-	hypothetical protein	NA	A0A1S7FYX8	Listeria_phage	31.1	7.1e-13
AVS30687.1|686480_686831_-	helix-turn-helix domain-containing protein	NA	A0A059T669	Listeria_phage	47.6	7.9e-19
AVS30688.1|686984_687182_+	XRE family transcriptional regulator	NA	A0A059T7X5	Listeria_phage	52.3	7.5e-11
AVS30689.1|687204_687531_+	DUF771 domain-containing protein	NA	A0A2H4J474	uncultured_Caudovirales_phage	40.6	3.2e-14
AVS30690.1|688743_689100_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AVS30691.1|689096_689513_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30692.1|689699_690224_+	sugar-phosphate nucleotidyltransferase	NA	A0A059T5F9	Listeria_phage	95.4	5.9e-95
AVS30693.1|690232_690697_+	class I SAM-dependent methyltransferase	NA	A0A059T693	Listeria_phage	97.4	1.4e-87
AVS30694.1|690693_691254_+	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	95.7	3.8e-100
AVS30695.1|691312_691714_+	hypothetical protein	NA	A8ATD9	Listeria_phage	100.0	2.6e-74
AVS30696.1|691710_691920_+	hypothetical protein	NA	A8ATE0	Listeria_phage	94.2	1.6e-30
AVS30697.1|692023_692203_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	85.5	1.4e-19
AVS30698.1|692199_692679_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.8	2.5e-68
AVS30699.1|692699_692939_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30700.1|692929_693115_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30701.1|693185_693704_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AVS30702.1|693700_694243_+|integrase	site-specific integrase	integrase	H0USV4	Bacillus_phage	53.3	2.5e-48
AVS30703.1|694258_694597_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30704.1|694861_695188_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30705.1|695184_695547_+	HNH endonuclease	NA	A0A075M5R4	Enterococcus_phage	45.2	1.2e-14
AVS30706.1|695641_696169_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	46.1	2.3e-30
AVS30707.1|696137_697889_+|terminase	terminase large subunit	terminase	A0A2H4JCI4	uncultured_Caudovirales_phage	50.5	5.3e-156
AVS30708.1|697895_698096_+	DUF1056 domain-containing protein	NA	NA	NA	NA	NA
AVS30709.1|698098_699334_+|portal	phage portal protein	portal	A0A2H4JAR2	uncultured_Caudovirales_phage	42.1	3.6e-82
AVS30710.1|699330_699897_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1D6Z2A7	Staphylococcus_phage	52.2	1.0e-44
AVS30711.1|699954_701130_+|capsid	phage major capsid protein	capsid	A0A060AI54	Enterococcus_phage	38.1	2.2e-44
AVS30712.1|701178_701517_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	37.8	8.1e-13
AVS30713.1|701486_701807_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AVS30714.1|701800_702166_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30715.1|702168_702567_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30716.1|702587_703163_+|tail	phage tail protein	tail	M1PRQ7	Streptococcus_phage	42.4	1.2e-32
AVS30717.1|703252_703600_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30718.1|703796_707996_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	43.7	1.2e-124
AVS30719.1|707988_710232_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	29.4	1.2e-56
AVS30720.1|710237_712529_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	37.9	5.7e-134
AVS30721.1|712521_713583_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	50.7	2.7e-94
AVS30722.1|713621_713987_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
AVS30723.1|713999_714281_+|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
AVS30724.1|714280_715126_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	95.1	1.8e-138
AVS30725.1|715199_715649_-	XRE family transcriptional regulator	NA	Q9T196	Listeria_phage	95.3	9.3e-73
AVS30726.1|715653_716025_-	hypothetical protein	NA	A0A059T5F6	Listeria_phage	92.6	1.6e-57
717047:717070	attL	CCTTCAGCCGGACTTGGGTATTTC	NA	NA	NA	NA
AVS30727.1|717517_717799_-|integrase	integrase	integrase	NA	NA	NA	NA
AVS30728.1|718200_719064_+	peptidase	NA	NA	NA	NA	NA
AVS30729.1|719063_719423_+	DUF3221 domain-containing protein	NA	NA	NA	NA	NA
AVS30730.1|719954_720488_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
719845:719868	attR	CCTTCAGCCGGACTTGGGTATTTC	NA	NA	NA	NA
AVS30731.1|720551_721469_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVS30732.1|721734_723615_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.2	1.1e-106
AVS30733.1|723710_724439_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30734.1|724579_725230_+	transaldolase	NA	A0A0E3HJ81	Synechococcus_phage	27.6	3.4e-15
AVS30735.1|725269_727090_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	28.4	2.2e-48
AVS30736.1|727324_728716_+	amino acid transporter	NA	NA	NA	NA	NA
AVS30737.1|728805_729645_+	glyoxalase	NA	NA	NA	NA	NA
AVS30738.1|729727_730012_-	hypothetical protein	NA	NA	NA	NA	NA
AVS30739.1|730109_731060_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
AVS30740.1|731083_731725_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVS30741.1|731767_734458_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
AVS30742.1|734503_735151_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVS30743.1|735159_735696_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVS33049.1|735682_736603_-	DUF975 domain-containing protein	NA	NA	NA	NA	NA
AVS30744.1|736793_737003_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30745.1|737070_737778_+	serine/threonine protein phosphatase	NA	A0A249Y183	Enterococcus_phage	27.8	2.5e-19
AVS30746.1|737821_738385_-	DUF420 domain-containing protein	NA	NA	NA	NA	NA
AVS30747.1|738504_738921_+	hypothetical protein	NA	NA	NA	NA	NA
AVS30748.1|738972_739608_+	endonuclease III domain-containing protein	NA	NA	NA	NA	NA
AVS30749.1|739597_740494_-	Rgg family transcriptional regulator	NA	NA	NA	NA	NA
AVS30750.1|740724_741009_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	1164822	1172245	3062735		Hokovirus(33.33%)	8	NA	NA
AVS31177.1|1164822_1165206_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
AVS31178.1|1165227_1166211_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
AVS31179.1|1166225_1167239_+	glycosyl transferase	NA	A0A1V0SAH6	Catovirus	32.0	6.0e-11
AVS31180.1|1167447_1168938_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
AVS31181.1|1168949_1169774_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	3.3e-68
AVS31182.1|1169786_1170095_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AVS31183.1|1170155_1170560_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA	NA
AVS31184.1|1170688_1172245_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 4
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	1261387	1364340	3062735	portal,holin,terminase,tRNA,capsid,tail,head,integrase,protease	Listeria_phage(71.67%)	110	1287072:1287093	1326654:1326675
AVS31292.1|1261387_1262440_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.9	1.3e-29
AVS31293.1|1262439_1264848_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AVS31294.1|1265008_1265710_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	3.0e-33
AVS31295.1|1265723_1269134_+	ABC transporter permease	NA	NA	NA	NA	NA
AVS31296.1|1269231_1269684_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVS31297.1|1269699_1272900_+	MMPL family transporter	NA	NA	NA	NA	NA
AVS31298.1|1273006_1273681_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.3	3.7e-49
AVS31299.1|1273717_1274644_-	ribonuclease HIII	NA	NA	NA	NA	NA
AVS31300.1|1274797_1275061_+	cell division protein ZapA	NA	NA	NA	NA	NA
AVS31301.1|1275060_1275603_+	CvpA family protein	NA	NA	NA	NA	NA
AVS31302.1|1275695_1277408_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	1.1e-17
AVS31303.1|1277430_1279788_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
AVS31304.1|1279868_1280180_+	thiol reductase thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	5.4e-19
AVS31305.1|1280255_1282067_+	UvrABC system protein C	NA	NA	NA	NA	NA
AVS31306.1|1282255_1283470_+	aspartate kinase	NA	NA	NA	NA	NA
AVS31307.1|1283525_1284020_-	DUF2507 domain-containing protein	NA	NA	NA	NA	NA
AVS31308.1|1284167_1284968_+	glutamate racemase	NA	NA	NA	NA	NA
AVS31309.1|1284980_1285727_+	ribonuclease PH	NA	NA	NA	NA	NA
AVS31310.1|1285730_1286342_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
AVS31311.1|1286378_1286903_+	metallophosphoesterase	NA	NA	NA	NA	NA
1287072:1287093	attL	AATCCCTCTCAGGACGTAATAT	NA	NA	NA	NA
AVS31312.1|1287188_1288343_-|integrase	site-specific integrase	integrase	A0A059T688	Listeria_phage	94.8	1.1e-207
AVS31313.1|1288474_1289089_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	77.0	7.7e-78
AVS31314.1|1289139_1289592_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	90.0	4.8e-77
AVS31315.1|1289608_1289932_-	XRE family transcriptional regulator	NA	A0A059T6G1	Listeria_phage	71.0	7.2e-35
AVS31316.1|1290330_1290534_-	hypothetical protein	NA	NA	NA	NA	NA
AVS31317.1|1290600_1290792_+	XRE family transcriptional regulator	NA	A0A059T5F8	Listeria_phage	87.1	5.4e-22
AVS31318.1|1290813_1291056_+	hypothetical protein	NA	A8ATD2	Listeria_phage	93.8	3.9e-41
AVS31319.1|1291058_1291244_+	hypothetical protein	NA	A8ATD3	Listeria_phage	98.4	3.7e-28
AVS31320.1|1291981_1292224_+	hypothetical protein	NA	NA	NA	NA	NA
AVS31321.1|1292509_1292725_+	hypothetical protein	NA	NA	NA	NA	NA
AVS31322.1|1292721_1293366_+	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	42.6	9.4e-34
AVS31323.1|1293424_1293940_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	45.5	1.8e-32
AVS33059.1|1294118_1294589_+	DUF1642 domain-containing protein	NA	R4IBV9	Listeria_phage	69.2	2.5e-28
AVS31324.1|1294589_1295012_+	hypothetical protein	NA	Q8W5W4	Listeria_phage	95.0	1.5e-69
AVS31325.1|1295178_1295556_+	hypothetical protein	NA	Q8W5W2	Listeria_phage	66.9	5.1e-40
AVS31326.1|1295559_1296039_+	hypothetical protein	NA	R4IBM0	Listeria_phage	76.7	7.6e-57
AVS31327.1|1296058_1296748_+	DNA-binding protein	NA	R4IDY8	Listeria_phage	96.9	1.1e-128
AVS31328.1|1296811_1298068_+	ATP-dependent helicase	NA	Q8W5V9	Listeria_phage	96.2	2.7e-234
AVS31329.1|1298092_1298578_+	DUF669 domain-containing protein	NA	A0A059T5G4	Listeria_phage	100.0	2.9e-88
AVS31330.1|1298600_1300874_+	DNA primase	NA	A0A059T6A4	Listeria_phage	99.9	0.0e+00
AVS31331.1|1301160_1301475_+	VRR-NUC domain-containing protein	NA	Q8W5V6	Listeria_phage	98.1	1.7e-52
AVS31332.1|1301587_1302121_+	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	78.3	8.2e-76
AVS31333.1|1302338_1302566_+	hypothetical protein	NA	NA	NA	NA	NA
AVS31334.1|1302578_1303004_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	100.0	8.0e-74
AVS31335.1|1303101_1303845_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
AVS31336.1|1304304_1304631_+	hypothetical protein	NA	A0A059T5G5	Listeria_phage	98.1	8.3e-55
AVS31337.1|1304630_1304945_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	99.0	3.8e-57
AVS31338.1|1304993_1305350_+	hypothetical protein	NA	A8AT94	Listeria_phage	99.0	2.0e-46
AVS31339.1|1305346_1306990_+|terminase	terminase large subunit	terminase	A8AT95	Listeria_phage	98.7	0.0e+00
AVS31340.1|1307001_1308132_+|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	98.4	4.0e-213
AVS31341.1|1308128_1308926_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	95.5	4.3e-137
AVS31342.1|1308952_1310104_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	93.0	2.7e-201
AVS31343.1|1310290_1310590_+	hypothetical protein	NA	A8ATA0	Listeria_phage	100.0	5.3e-48
AVS31344.1|1310573_1310939_+|head,tail	phage head-tail adapter protein	head,tail	A8ATA1	Listeria_phage	94.2	2.3e-61
AVS31345.1|1310935_1311337_+	hypothetical protein	NA	A8ATA2	Listeria_phage	97.0	2.0e-66
AVS31346.1|1311333_1311717_+	DUF3168 domain-containing protein	NA	A8ATA3	Listeria_phage	95.3	4.4e-63
AVS31347.1|1311738_1312326_+|tail	phage tail protein	tail	A8ATA4	Listeria_phage	100.0	4.0e-108
AVS31348.1|1312397_1312730_+	hypothetical protein	NA	A8ATA5	Listeria_phage	99.1	1.8e-52
AVS31349.1|1312945_1317871_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	94.5	0.0e+00
AVS31350.1|1317863_1319513_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	99.6	0.0e+00
AVS31351.1|1319525_1321820_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	98.3	0.0e+00
AVS31352.1|1321809_1322901_+	carbohydrate-binding protein CenC	NA	A0A059T7R4	Listeria_phage	98.9	5.8e-201
AVS31353.1|1322939_1323305_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
AVS31354.1|1323317_1323599_+|holin	holin	holin	A8ASL4	Listeria_phage	93.5	1.0e-40
AVS31355.1|1323598_1324444_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	94.7	2.7e-137
AVS33060.1|1324484_1325258_-	DUF3825 domain-containing protein	NA	A8ATW5	Listeria_phage	100.0	9.5e-150
AVS31356.1|1325531_1325714_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	96.6	2.3e-22
AVS31357.1|1326154_1326388_+	hypothetical protein	NA	A8ATC5	Listeria_phage	98.7	1.6e-36
AVS31358.1|1326384_1326576_+	hypothetical protein	NA	A8ATC6	Listeria_phage	87.3	8.9e-25
AVS31359.1|1327034_1328393_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1326654:1326675	attR	AATCCCTCTCAGGACGTAATAT	NA	NA	NA	NA
AVS31360.1|1328434_1329028_-	hypothetical protein	NA	NA	NA	NA	NA
AVS31361.1|1329164_1329572_-	VOC family protein	NA	NA	NA	NA	NA
AVS31362.1|1329736_1330336_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.5	2.9e-29
AVS31363.1|1330368_1330629_-	hypothetical protein	NA	NA	NA	NA	NA
AVS31364.1|1330752_1332165_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.1	1.1e-50
AVS31365.1|1332189_1332453_+	DUF3116 domain-containing protein	NA	NA	NA	NA	NA
AVS31366.1|1332620_1333097_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
AVS31367.1|1333134_1333380_-	hypothetical protein	NA	NA	NA	NA	NA
AVS31368.1|1333376_1334582_-	MFS transporter	NA	NA	NA	NA	NA
AVS31369.1|1334578_1334788_-	hypothetical protein	NA	NA	NA	NA	NA
AVS31370.1|1334786_1335446_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AVS31371.1|1335487_1335682_-	hypothetical protein	NA	NA	NA	NA	NA
AVS31372.1|1335748_1336597_-	YitT family protein	NA	NA	NA	NA	NA
AVS31373.1|1337216_1337930_+	trehalose operon repressor	NA	NA	NA	NA	NA
AVS31374.1|1337949_1339608_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
AVS31375.1|1339626_1341111_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
AVS31376.1|1341226_1341679_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AVS31377.1|1341725_1342190_-	hypothetical protein	NA	NA	NA	NA	NA
AVS31378.1|1342378_1343299_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVS31379.1|1343318_1344566_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
AVS31380.1|1344549_1345380_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
AVS31381.1|1345515_1346655_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS31382.1|1346735_1347131_-	XRE family transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
AVS31383.1|1347281_1347497_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVS31384.1|1347614_1348148_+	hypothetical protein	NA	NA	NA	NA	NA
AVS31385.1|1348165_1348831_+	hypothetical protein	NA	NA	NA	NA	NA
AVS31386.1|1349092_1350031_+	hypothetical protein	NA	NA	NA	NA	NA
AVS31387.1|1350145_1351429_+	trigger factor	NA	NA	NA	NA	NA
AVS31388.1|1351614_1352874_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
AVS31389.1|1352992_1353559_+	signal peptidase I	NA	NA	NA	NA	NA
AVS31390.1|1353593_1354163_+	signal peptidase I	NA	NA	NA	NA	NA
AVS31391.1|1354264_1354807_+	signal peptidase I	NA	NA	NA	NA	NA
AVS31392.1|1354816_1355680_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
AVS31393.1|1355676_1356462_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
AVS31394.1|1356595_1357456_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AVS31395.1|1357726_1359805_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	3.2e-107
AVS31396.1|1359867_1361172_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
AVS31397.1|1361454_1362357_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
AVS31398.1|1362377_1362917_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AVS31399.1|1362930_1364340_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	28.7	3.7e-43
>prophage 5
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	1899319	1907605	3062735		Synechococcus_phage(33.33%)	8	NA	NA
AVS31884.1|1899319_1899886_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
AVS31885.1|1899882_1900932_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.5	4.6e-62
AVS31886.1|1900950_1902378_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
AVS31887.1|1902362_1904582_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	1.5e-160
AVS31888.1|1904574_1905258_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVS31889.1|1905261_1905507_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVS31890.1|1905518_1906232_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	37.8	8.8e-41
AVS31891.1|1906312_1907605_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 6
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	2422687	2459908	3062735	capsid,holin,tail,terminase	Listeria_phage(97.87%)	49	NA	NA
AVS32381.1|2422687_2422894_+	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	82.8	1.3e-16
AVS32382.1|2423109_2424108_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	44.8	3.9e-71
AVS32383.1|2424211_2425060_-	peptidase M15	NA	A0A059T7Y8	Listeria_phage	82.7	2.0e-129
AVS32384.1|2425059_2425341_-|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
AVS32385.1|2425353_2425719_-	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
AVS32386.1|2425757_2427923_-	hypothetical protein	NA	A8ATW1	Listeria_phage	94.3	0.0e+00
AVS32387.1|2427935_2429504_-|tail	phage tail protein	tail	A8ATW0	Listeria_phage	98.9	9.8e-303
AVS32388.1|2429500_2434300_-|tail	phage tail tape measure protein	tail	A8ATV9	Listeria_phage	85.9	0.0e+00
AVS32389.1|2434304_2434616_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	95.6	2.2e-41
AVS32390.1|2434612_2435044_-	hypothetical protein	NA	A8ATV7	Listeria_phage	95.8	2.4e-70
AVS32391.1|2435099_2435789_-	hypothetical protein	NA	A0A0B5CYK8	Listeria_phage	84.3	4.9e-97
AVS32392.1|2435793_2436165_-	hypothetical protein	NA	A0A0B5CTY4	Listeria_phage	100.0	1.1e-63
AVS32393.1|2436161_2436479_-	hypothetical protein	NA	A8ATV4	Listeria_phage	98.1	1.9e-51
AVS32394.1|2436468_2436834_-	hypothetical protein	NA	A8ATV3	Listeria_phage	90.1	3.3e-60
AVS32395.1|2436833_2437187_-	hypothetical protein	NA	A8ATV2	Listeria_phage	98.3	1.1e-60
AVS32396.1|2437356_2438229_-	hypothetical protein	NA	A0A0B5CTX8	Listeria_phage	93.8	2.3e-152
AVS32397.1|2438251_2438806_-	hypothetical protein	NA	A8ATU9	Listeria_phage	99.5	5.1e-89
AVS32398.1|2438901_2439942_-|capsid	minor capsid protein	capsid	A8ATU8	Listeria_phage	100.0	1.6e-200
AVS32399.1|2439946_2441503_-	hypothetical protein	NA	A8ATU7	Listeria_phage	99.8	5.3e-301
AVS32400.1|2441517_2442837_-|terminase	PBSX family phage terminase large subunit	terminase	A8ATU6	Listeria_phage	99.8	1.5e-264
AVS32401.1|2442829_2443570_-	TerS	NA	A8ATU5	Listeria_phage	99.2	3.1e-134
AVS32402.1|2443609_2443837_-	hypothetical protein	NA	A0A0B5CTV3	Listeria_phage	94.7	1.8e-32
AVS32403.1|2444097_2444670_-	RNA polymerase subunit sigma-70	NA	A0A0B5D145	Listeria_phage	96.8	3.3e-99
AVS32404.1|2444757_2444913_-	DUF3954 domain-containing protein	NA	A0A0B5D0E9	Listeria_phage	98.0	1.1e-22
AVS32405.1|2445057_2445462_-	hypothetical protein	NA	A8AU00	Listeria_phage	97.8	3.5e-71
AVS32406.1|2445564_2445870_-	response regulator	NA	A8ATZ8	Listeria_phage	82.2	2.5e-37
AVS32407.1|2445901_2446384_-	single-stranded DNA-binding protein	NA	A0A059T5E0	Listeria_phage	71.2	2.0e-57
AVS32408.1|2446937_2447339_-	hypothetical protein	NA	R4ICD6	Listeria_phage	52.9	1.8e-30
AVS32409.1|2447335_2447890_-	pentapeptide repeat-containing protein	NA	A8ATE4	Listeria_phage	92.3	1.5e-43
AVS32410.1|2447886_2448096_-	hypothetical protein	NA	A8ASN7	Listeria_phage	64.2	1.6e-14
AVS32411.1|2448270_2449233_-	DnaD domain protein	NA	A8ASN4	Listeria_phage	86.1	3.7e-151
AVS32412.1|2449249_2449909_-	single-stranded DNA-binding protein	NA	A8ASN3	Listeria_phage	93.2	2.7e-92
AVS32413.1|2449914_2450391_-	hypothetical protein	NA	A8ASN2	Listeria_phage	94.9	7.6e-57
AVS32414.1|2450387_2450582_-	hypothetical protein	NA	A8ASN1	Listeria_phage	100.0	7.1e-30
AVS32415.1|2450886_2451075_-	hypothetical protein	NA	Q9T175	Listeria_phage	80.6	9.1e-22
AVS32416.1|2451180_2451396_-	hypothetical protein	NA	Q9T176	Listeria_phage	88.7	2.4e-26
AVS32417.1|2451392_2451926_-	hypothetical protein	NA	A8ATY1	Listeria_phage	87.9	1.3e-78
AVS32418.1|2452050_2452830_-	phage antirepressor Ant	NA	A8ASM6	Listeria_phage	96.9	1.8e-140
AVS32419.1|2452971_2453436_+	hypothetical protein	NA	A8ATX9	Listeria_phage	99.4	1.4e-79
AVS32420.1|2453413_2453767_-	hypothetical protein	NA	A8ATX8	Listeria_phage	100.0	9.9e-54
AVS32421.1|2453763_2454000_-	hypothetical protein	NA	A8ATX7	Listeria_phage	100.0	1.1e-37
AVS32422.1|2454064_2454268_+	hypothetical protein	NA	A0A0B5D131	Listeria_phage	100.0	9.8e-30
AVS32423.1|2454326_2454539_-	transcriptional regulator	NA	A0A0B5D0D3	Listeria_phage	97.1	1.1e-31
AVS32424.1|2454704_2455127_+	helix-turn-helix domain-containing protein	NA	A0A0B5CYL9	Listeria_phage	97.1	3.4e-69
AVS32425.1|2455142_2455568_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0B5CTZ7	Listeria_phage	99.3	3.8e-76
AVS32426.1|2455582_2456188_+	hypothetical protein	NA	NA	NA	NA	NA
AVS32427.1|2456243_2456774_+	hypothetical protein	NA	A0A0B5D0D1	Listeria_phage	24.7	9.8e-05
AVS32428.1|2456974_2458489_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AVS32429.1|2458549_2459908_+	recombinase family protein	NA	Q9T193	Listeria_phage	96.2	4.9e-250
>prophage 7
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	2596442	2657140	3062735	portal,holin,terminase,capsid,tail,plate,integrase,protease	Listeria_phage(87.14%)	83	2596832:2596847	2637762:2637777
AVS32556.1|2596442_2596778_+	hypothetical protein	NA	S5MNN8	Brevibacillus_phage	76.6	6.0e-16
2596832:2596847	attL	TTATGCCCTCGGAGGG	NA	NA	NA	NA
AVS32557.1|2597029_2597233_-	hypothetical protein	NA	A8ATX1	Listeria_phage	100.0	2.7e-32
AVS32558.1|2597229_2597463_-	hypothetical protein	NA	A8ATX0	Listeria_phage	100.0	3.3e-37
AVS32559.1|2597762_2597996_+	hypothetical protein	NA	A8ATW9	Listeria_phage	48.1	9.2e-08
AVS32560.1|2598024_2598396_+	hypothetical protein	NA	A0A059T5F6	Listeria_phage	92.7	5.3e-58
AVS32561.1|2598401_2598851_+	hypothetical protein	NA	A8ATW7	Listeria_phage	99.3	6.9e-76
AVS32562.1|2598875_2599373_+	AP2 domain-containing protein	NA	A8ATW6	Listeria_phage	97.6	1.8e-88
AVS32563.1|2599449_2600001_-	hypothetical protein	NA	A8ASL6	Listeria_phage	95.6	7.4e-96
AVS32564.1|2600494_2601340_-	peptidase M15	NA	A0A059T7Y8	Listeria_phage	95.8	2.6e-140
AVS32565.1|2601339_2601621_-|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
AVS32566.1|2601633_2601999_-	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
AVS32567.1|2602026_2602185_-	hypothetical protein	NA	Q9T1A1	Listeria_phage	100.0	6.0e-19
AVS32568.1|2602189_2602507_-	hypothetical protein	NA	Q9T1A2	Listeria_phage	100.0	6.2e-55
AVS32569.1|2602518_2603592_-|plate	phage baseplate upper protein	plate	Q9T1A3	Listeria_phage	100.0	4.5e-198
AVS32570.1|2603591_2604620_-	hypothetical protein	NA	Q9T1A4	Listeria_phage	100.0	4.6e-192
AVS32571.1|2604620_2605646_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	97.9	8.1e-197
AVS32572.1|2605654_2606473_-|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	91.9	6.8e-146
AVS32573.1|2606474_2611859_-|tail	tail tape measure protein	tail	Q9T1A7	Listeria_phage	89.7	0.0e+00
AVS32574.1|2611869_2612469_-	hypothetical protein	NA	A0A0B5CTW0	Listeria_phage	72.0	1.9e-76
AVS32575.1|2612474_2612897_-	hypothetical protein	NA	Q9T1A9	Listeria_phage	97.1	2.2e-68
AVS32576.1|2612952_2613285_-	Ig-like virion protein	NA	Q9T1B0	Listeria_phage	97.2	7.7e-48
AVS32577.1|2613214_2613652_-|tail	phage tail protein	tail	A0A0B5CYN3	Listeria_phage	98.6	7.2e-78
AVS32578.1|2613654_2614062_-|capsid	minor capsid protein	capsid	Q9T1B2	Listeria_phage	98.5	9.0e-67
AVS32579.1|2614061_2614400_-|capsid	minor capsid protein	capsid	Q9T1B3	Listeria_phage	99.1	2.9e-58
AVS32580.1|2614399_2614762_-|capsid	minor capsid protein	capsid	A0A059T658	Listeria_phage	95.8	6.0e-62
AVS32581.1|2614761_2615157_-	hypothetical protein	NA	A0A0B5D0F6	Listeria_phage	96.2	1.5e-63
AVS32582.1|2615158_2615317_-	hypothetical protein	NA	A8ASJ7	Listeria_phage	98.1	5.1e-18
AVS32583.1|2615316_2616216_-|capsid	phage major capsid protein	capsid	A0A0B5CU19	Listeria_phage	99.7	2.0e-167
AVS32584.1|2616239_2616809_-	scaffolding protein	NA	A0A0B5CTV7	Listeria_phage	98.4	3.1e-81
AVS32585.1|2616887_2618027_-|capsid	minor capsid protein	capsid	A0A0B5D147	Listeria_phage	95.8	3.2e-202
AVS32586.1|2618032_2619523_-|portal	phage portal protein	portal	Q9T1C0	Listeria_phage	98.2	7.2e-279
AVS32587.1|2619535_2620867_-|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	94.1	1.6e-250
AVS32588.1|2620835_2621378_-|terminase	terminase small subunit	terminase	A0A0B5CU16	Listeria_phage	89.8	3.1e-78
AVS32589.1|2621421_2621859_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.4	3.3e-14
AVS32590.1|2621947_2622505_-	hypothetical protein	NA	A8ASQ2	Listeria_phage	87.1	1.6e-82
AVS32591.1|2622765_2623200_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	88.9	3.0e-68
AVS32592.1|2623363_2623747_-	DUF2481 domain-containing protein	NA	A8ASP8	Listeria_phage	56.7	2.3e-35
AVS32593.1|2623750_2624155_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	83.6	2.2e-57
AVS32594.1|2624099_2624282_-	hypothetical protein	NA	A8ASP6	Listeria_phage	81.0	2.2e-17
AVS32595.1|2624300_2624783_-	single-stranded DNA-binding protein	NA	A0A059T5E0	Listeria_phage	71.2	2.0e-57
AVS32596.1|2625336_2625738_-	hypothetical protein	NA	R4ICD6	Listeria_phage	52.9	1.8e-30
AVS32597.1|2625734_2626289_-	pentapeptide repeat-containing protein	NA	A8ATE4	Listeria_phage	92.3	1.5e-43
AVS32598.1|2626285_2626495_-	hypothetical protein	NA	A8ASN7	Listeria_phage	64.2	1.6e-14
AVS32599.1|2626669_2627593_-	DnaD domain protein	NA	A8ATY7	Listeria_phage	90.6	2.3e-150
AVS32600.1|2627612_2628428_-	recombinase RecT	NA	Q9T172	Listeria_phage	94.8	1.7e-144
AVS32601.1|2628430_2629390_-	hypothetical protein	NA	Q9T173	Listeria_phage	83.1	2.8e-151
AVS32602.1|2629621_2629810_-	hypothetical protein	NA	Q9T175	Listeria_phage	80.6	1.2e-21
AVS32603.1|2629914_2630151_-	DUF771 domain-containing protein	NA	A8ATY2	Listeria_phage	88.5	1.9e-37
AVS32604.1|2630156_2630681_-	hypothetical protein	NA	A8ASM7	Listeria_phage	90.8	8.3e-81
AVS32605.1|2630802_2631582_-	phage antirepressor Ant	NA	A0A059T6E7	Listeria_phage	96.5	7.6e-139
AVS32606.1|2631645_2631843_+	adenylate kinase	NA	Q9T179	Listeria_phage	100.0	6.2e-21
AVS32607.1|2631844_2632126_-	hypothetical protein	NA	A0A0B5CTX3	Listeria_phage	100.0	1.0e-40
AVS32608.1|2632122_2632359_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	100.0	3.3e-37
AVS32609.1|2632370_2632565_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	96.9	6.3e-26
AVS32610.1|2632630_2632861_+	hypothetical protein	NA	Q9T185	Listeria_phage	98.7	2.3e-35
AVS32611.1|2632789_2633056_-	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	100.0	2.5e-41
AVS32612.1|2633073_2633385_+	hypothetical protein	NA	NA	NA	NA	NA
AVS32613.1|2633344_2633530_-	hypothetical protein	NA	NA	NA	NA	NA
AVS32614.1|2633550_2633784_-	XRE family transcriptional regulator	NA	A8ASM3	Listeria_phage	95.9	1.6e-31
AVS32615.1|2633946_2634423_+	XRE family transcriptional regulator	NA	A8ASM2	Listeria_phage	80.3	4.5e-57
AVS32616.1|2634578_2634746_+	hypothetical protein	NA	NA	NA	NA	NA
AVS32617.1|2634801_2635020_+	zinc ribbon domain-containing protein	NA	A0A059T6E3	Listeria_phage	81.9	2.4e-26
AVS32618.1|2635035_2635758_+	hypothetical protein	NA	A0A059T7P9	Listeria_phage	99.6	8.7e-105
AVS32619.1|2635778_2636486_+	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	74.0	3.1e-91
AVS32620.1|2636549_2637680_+|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	93.4	2.3e-200
AVS32621.1|2637955_2639392_-	chitin-binding protein	NA	A0A2D1GD28	Mycobacterium_phage	29.1	4.4e-07
2637762:2637777	attR	TTATGCCCTCGGAGGG	NA	NA	NA	NA
AVS32622.1|2639548_2640145_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.4	6.6e-58
AVS32623.1|2640190_2641582_-	amino acid permease	NA	NA	NA	NA	NA
AVS32624.1|2641799_2642966_+	cell surface protein	NA	NA	NA	NA	NA
AVS32625.1|2643018_2644035_-	NADPH dehydrogenase NamA	NA	NA	NA	NA	NA
AVS32626.1|2644061_2645033_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
AVS32627.1|2645040_2646009_-	gluconeogenesis factor	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
AVS32628.1|2646010_2646886_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
AVS32629.1|2646993_2648724_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.8	3.9e-175
AVS32630.1|2648765_2649827_-	galactose mutarotase	NA	NA	NA	NA	NA
AVS32631.1|2649843_2650827_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
AVS32632.1|2650945_2651905_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
AVS32633.1|2651983_2653459_-	hypothetical protein	NA	NA	NA	NA	NA
AVS32634.1|2653544_2654042_-	acyltransferase	NA	NA	NA	NA	NA
AVS32635.1|2654045_2654699_-	pyrophosphatase PpaX	NA	NA	NA	NA	NA
AVS32636.1|2654742_2655576_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AVS32637.1|2655661_2656600_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AVS32638.1|2656786_2657140_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 1
CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	0	11746	62214	protease	Streptococcus_phage(100.0%)	16	NA	NA
AVS33100.1|1481_1673_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33101.1|1679_2066_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33102.1|2081_3341_+	type II/IV secretion system protein	NA	NA	NA	NA	NA
AVS33103.1|3312_4125_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33104.1|4124_4898_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33105.1|4898_5255_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33106.1|5650_5893_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33107.1|5925_6150_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33108.1|6166_6805_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33109.1|6816_7320_+	DUF669 domain-containing protein	NA	NA	NA	NA	NA
AVS33110.1|7417_7603_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33111.1|7626_7914_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33112.1|7999_8701_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS33113.1|8721_9294_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33114.1|9304_9589_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33115.1|9601_11746_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	35.7	8.1e-82
>prophage 2
CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	20883	21924	62214		Streptococcus_phage(100.0%)	1	NA	NA
AVS33122.1|20883_21924_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	49.6	1.9e-28
>prophage 3
CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	26273	53441	62214	protease,transposase	Enterococcus_phage(15.38%)	27	NA	NA
AVS33128.1|26273_27038_+	Fic family protein	NA	A0A0G3Y4Q5	Ostreid_herpesvirus	27.5	8.3e-05
AVS33129.1|27157_27688_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33130.1|27791_28929_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	69.1	4.1e-48
AVS33131.1|28993_29329_-	XRE family transcriptional regulator	NA	A0A139ZPK3	Marinitoga_camini_virus	35.0	2.8e-05
AVS33132.1|29502_29901_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33133.1|29904_35955_+	helicase SNF2	NA	A0A248SL14	Klebsiella_phage	35.3	5.5e-269
AVS33155.1|36124_36376_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVS33134.1|36379_37351_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33135.1|37573_37915_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
AVS33136.1|37908_38151_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AVS33137.1|38211_38463_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33138.1|38593_38920_+	hypothetical protein	NA	A0A2K9V3N4	Faecalibacterium_phage	40.8	3.2e-06
AVS33139.1|38919_39582_+	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
AVS33140.1|39594_39978_+	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	53.4	2.2e-14
AVS33141.1|40136_40625_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33156.1|41227_43405_+	hypothetical protein	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	25.0	2.0e-19
AVS33142.1|43618_44227_+	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	42.9	1.0e-21
AVS33143.1|44216_44444_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33144.1|44563_44842_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33145.1|44804_45041_+	XRE family transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	53.4	6.7e-14
AVS33146.1|45468_47583_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.1	3.4e-117
AVS33147.1|47858_49199_+|transposase	IS3 family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	38.6	1.1e-31
AVS33157.1|49373_50108_+	ParA family protein	NA	NA	NA	NA	NA
AVS33148.1|50312_50657_+	hypothetical protein	NA	NA	NA	NA	NA
AVS33149.1|50644_51925_+	excinuclease ABC subunit A	NA	O64031	Bacillus_phage	45.1	4.0e-92
AVS33150.1|52297_52630_-	hypothetical protein	NA	NA	NA	NA	NA
AVS33158.1|52622_53441_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	42.2	5.7e-52
>prophage 4
CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	56748	60861	62214	transposase	Salmonella_phage(33.33%)	3	NA	NA
AVS33152.1|56748_59664_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	3.2e-174
AVS33153.1|59667_60222_-	resolvase	NA	A0A0F7LA37	Escherichia_phage	53.4	7.0e-38
AVS33154.1|60501_60861_+	cadmium resistance transcriptional regulator CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
