The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	316481	324793	2790673	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AVS02580.1|316481_317267_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AVS02581.1|317392_318283_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AVS02582.1|318292_319639_-	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AVS02583.1|319752_320853_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
AVS02584.1|320855_321533_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AVS02585.1|321663_322770_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AVS02586.1|322993_324793_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	2.3e-53
>prophage 2
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	394446	403489	2790673	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AVS02656.1|394446_394965_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
AVS02657.1|394986_397260_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	4.7e-64
AVS02658.1|397462_399742_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AVS02659.1|400016_400277_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AVS02660.1|400295_401435_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AVS02661.1|401457_402483_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVS02662.1|402484_403489_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 3
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	529011	647869	2790673	protease,capsid,portal,transposase,tail,integrase,holin,head,tRNA,terminase	Staphylococcus_phage(87.27%)	129	584065:584080	656900:656915
AVS02772.1|529011_535338_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	82.2	1.9e-267
AVS02773.1|535664_535976_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
AVS02774.1|535997_538415_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AVS02775.1|538702_539884_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AVS02776.1|539993_540947_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AVS02777.1|540943_541507_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	1.2e-101
AVS02778.1|541626_542028_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVS02779.1|542601_543429_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVS02780.1|543431_543551_-	hypothetical protein	NA	NA	NA	NA	NA
AVS02781.1|543562_543754_-	hypothetical protein	NA	NA	NA	NA	NA
AVS02782.1|543662_544664_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AVS02783.1|544785_545250_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AVS02784.1|545262_546444_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	8.6e-227
AVS02785.1|546454_547087_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	1.1e-111
AVS04868.1|547093_548125_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
AVS02786.1|548617_550120_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
AVS02787.1|550641_550956_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	3.7e-52
AVS02788.1|550955_552248_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	98.1	1.0e-225
AVS02789.1|552265_552661_+	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	2.4e-72
AVS02790.1|553009_553864_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AVS02791.1|554139_554364_-	hypothetical protein	NA	NA	NA	NA	NA
AVS02792.1|554562_555033_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
AVS02793.1|555145_555589_+	competence protein ComK	NA	NA	NA	NA	NA
AVS02794.1|555575_556019_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AVS04869.1|556316_556952_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS02795.1|557377_558091_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AVS02796.1|558348_558651_+	hypothetical protein	NA	NA	NA	NA	NA
AVS02797.1|558906_559272_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
AVS02798.1|559268_559622_+	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AVS02799.1|559871_560705_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	2.7e-158
AVS02800.1|560916_561825_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	4.4e-138
AVS02801.1|561968_563285_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.8	4.6e-43
AVS02802.1|563454_564648_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AVS02803.1|565019_566612_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
AVS04870.1|566908_567655_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	1.6e-141
AVS02804.1|567659_568133_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	6.1e-83
AVS02805.1|568198_568456_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AVS02806.1|568452_569454_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	1.9e-182
AVS02807.1|569458_570937_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	5.8e-281
AVS04871.1|571095_571551_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	2.8e-77
AVS02808.1|571853_572504_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	78.7	2.5e-50
AVS02809.1|572584_573580_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	4.3e-70
AVS02810.1|573655_574282_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.8	7.4e-76
AVS02811.1|574322_574667_+	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
AVS02812.1|574764_575337_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
AVS02813.1|575712_576549_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AVS02814.1|576536_577241_+	hypothetical protein	NA	NA	NA	NA	NA
AVS02815.1|577355_577541_-	hypothetical protein	NA	NA	NA	NA	NA
AVS02816.1|577542_577719_-	hypothetical protein	NA	NA	NA	NA	NA
AVS04872.1|577729_578113_-	hypothetical protein	NA	NA	NA	NA	NA
AVS02817.1|578799_579246_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVS02818.1|579697_579793_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AVS02819.1|579915_580017_+	hypothetical protein	NA	NA	NA	NA	NA
AVS02820.1|580679_584792_-	NTPase	NA	A0A2H4PQT3	Staphylococcus_phage	98.5	0.0e+00
584065:584080	attL	TTATCTAAAATATCTT	NA	NA	NA	NA
AVS02821.1|585554_586754_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	97.7	3.7e-225
AVS02822.1|586746_588303_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.8	4.4e-287
AVS02823.1|588656_589376_-|protease	serine protease	protease	A0A2H4PQP1	Staphylococcus_phage	95.4	8.9e-126
AVS02824.1|589500_590220_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	86.6	7.1e-115
AVS02825.1|590277_591000_-|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	84.6	3.5e-114
AVS02826.1|591057_591780_-|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	94.6	9.0e-126
AVS02827.1|591904_592612_-|protease	serine protease	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	8.2e-124
AVS02828.1|593566_594148_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	60.1	1.9e-49
AVS02829.1|595080_595554_+	hypothetical protein	NA	NA	NA	NA	NA
AVS02830.1|595558_596350_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AVS02831.1|596719_597703_-	leucotoxin LukDv	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	6.8e-185
AVS02832.1|597704_598640_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	98.4	1.1e-171
AVS02833.1|599520_599925_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	82.1	3.4e-58
AVS02834.1|599988_600777_+	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	1.1e-140
AVS02835.1|601646_601934_-	hypothetical protein	NA	NA	NA	NA	NA
AVS02836.1|602097_602562_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	94.8	6.1e-27
AVS02837.1|603766_604771_-	hypothetical protein	NA	A0A1W6JNN3	Staphylococcus_phage	42.0	8.0e-64
AVS02838.1|604754_606647_-	adenine methyltransferase	NA	A0A1W6JNK1	Staphylococcus_phage	70.9	1.9e-268
AVS02839.1|607034_608480_-	autolysin	NA	S4V6E6	Staphylococcus_phage	97.7	1.5e-289
AVS02840.1|608460_608898_-|holin	phage holin	holin	A0A0K1LLA7	Staphylococcus_phage	96.6	6.5e-71
AVS02841.1|608948_610961_-|tail	phage tail protein	tail	Q4ZA81	Staphylococcus_virus	96.3	0.0e+00
AVS02842.1|610973_612848_-	CHAP domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	91.5	0.0e+00
AVS02843.1|612984_613284_-	hypothetical protein	NA	B7T0E7	Staphylococcus_virus	78.8	2.5e-29
AVS04873.1|613324_613498_-	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
AVS02844.1|613507_613885_-	DUF2977 domain-containing protein	NA	Q4ZA86	Staphylococcus_virus	99.2	2.6e-60
AVS02845.1|613884_615708_-	hypothetical protein	NA	Q4ZA88	Staphylococcus_virus	99.5	0.0e+00
AVS02846.1|615707_617606_-	hypothetical protein	NA	A0A059T5B2	Staphylococcus_phage	98.1	0.0e+00
AVS02847.1|617618_619505_-	peptidase	NA	A0A059T677	Staphylococcus_phage	99.8	0.0e+00
AVS02848.1|619515_620457_-|tail	phage tail protein	tail	A0A059T7K5	Staphylococcus_phage	98.4	1.2e-178
AVS02849.1|620471_623357_-|terminase	terminase	terminase	M9NRJ5	Staphylococcus_phage	95.8	0.0e+00
AVS02850.1|623360_623645_-	hypothetical protein	NA	A0A059T626	Staphylococcus_phage	97.9	3.4e-44
AVS02851.1|623689_624202_-	hypothetical protein	NA	A0A059T5B1	Staphylococcus_phage	100.0	5.4e-93
AVS02852.1|624268_624826_-|tail	phage tail protein	tail	A0A059T675	Staphylococcus_phage	100.0	4.1e-102
AVS02853.1|624826_625252_-	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
AVS02854.1|625264_625678_-	hypothetical protein	NA	A0A0N9BAY5	Staphylococcus_phage	99.3	2.4e-75
AVS02855.1|625664_626000_-|head,tail	phage head-tail adapter protein	head,tail	Q4ZBR2	Staphylococcus_phage	99.1	2.0e-59
AVS02856.1|626011_626362_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	98.3	2.7e-59
AVS02857.1|626522_627437_-|capsid	phage major capsid protein	capsid	A0A059T7K3	Staphylococcus_phage	99.3	1.3e-169
AVS02858.1|627453_628038_-	hypothetical protein	NA	M9NRJ1	Staphylococcus_phage	99.5	9.9e-75
AVS02859.1|628133_629084_-|head	phage head morphogenesis protein	head	A0A0H3U2Z4	Staphylococcus_phage	98.4	2.3e-174
AVS02860.1|629052_630477_-|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	98.3	3.8e-269
AVS02861.1|630473_631697_-|terminase	PBSX family phage terminase large subunit	terminase	A0A059T7K2	Staphylococcus_phage	99.0	3.5e-239
AVS02862.1|631689_632184_-|terminase	terminase	terminase	A0A059T7P8	Staphylococcus_phage	89.6	4.9e-67
AVS02863.1|632511_632934_-	DUF1492 domain-containing protein	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
AVS02864.1|632957_633104_-	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
AVS02865.1|633104_633470_-	hypothetical protein	NA	A0A059T670	Staphylococcus_phage	100.0	1.6e-59
AVS02866.1|633470_633644_-	transcriptional regulator	NA	A0A059T7K1	Staphylococcus_phage	100.0	2.2e-22
AVS02867.1|633645_633834_-	hypothetical protein	NA	A0A059T7P6	Staphylococcus_phage	98.4	1.4e-27
AVS02868.1|633830_634037_-	DUF1381 domain-containing protein	NA	A0A059T622	Staphylococcus_phage	100.0	1.3e-21
AVS02869.1|634073_634610_-	dUTPase	NA	A0A1P8L6E0	Staphylococcus_phage	98.9	3.0e-94
AVS02870.1|634602_634851_-	DUF1024 domain-containing protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
AVS02871.1|635118_635529_-	hypothetical protein	NA	A0A1P8CN10	Staphylococcus_phage	69.1	2.1e-47
AVS02872.1|635542_635785_-	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	97.5	8.6e-41
AVS02873.1|635788_636157_-	hypothetical protein	NA	A0A0H4J337	Staphylococcus_phage	98.4	2.2e-51
AVS02874.1|636157_636343_-	DUF3113 domain-containing protein	NA	A0A059T620	Staphylococcus_phage	96.7	3.5e-26
AVS02875.1|636347_636752_-	hypothetical protein	NA	Q6R835	Staphylococcus_virus	97.0	8.7e-70
AVS02876.1|636762_636984_-	DUF3269 domain-containing protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AVS02877.1|636986_637202_-	hypothetical protein	NA	A9CR72	Staphylococcus_phage	98.6	1.2e-33
AVS02878.1|637198_638440_-	damage-inducible protein	NA	Q8SDW1	Staphylococcus_phage	99.0	1.2e-226
AVS02879.1|638436_638793_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	99.2	6.9e-63
AVS02880.1|638792_639548_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	91.2	1.1e-129
AVS02881.1|640228_640654_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	100.0	4.0e-73
AVS02882.1|640653_641292_-	single-stranded DNA-binding protein	NA	R4II59	Staphylococcus_phage	100.0	1.7e-115
AVS02883.1|641291_641771_-	siphovirus superfamily	NA	Q4ZAD7	Staphylococcus_virus	97.5	3.4e-81
AVS02884.1|641785_642046_-	DUF1108 domain-containing protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
AVS02885.1|642139_642301_-	DUF1270 domain-containing protein	NA	A0A059T7J6	Staphylococcus_phage	98.1	4.3e-20
AVS02886.1|642315_642531_-	DUF771 domain-containing protein	NA	B7T098	Staphylococcus_virus	100.0	6.3e-35
AVS02887.1|642543_643299_-	oxidoreductase	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
AVS02888.1|643300_643486_-	XRE family transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
AVS02889.1|643931_644414_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
AVS02890.1|644647_644887_-	XRE family transcriptional regulator	NA	A0A2H4J306	uncultured_Caudovirales_phage	97.5	3.0e-38
AVS02891.1|645079_645412_+	XRE family transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	73.6	6.1e-37
AVS02892.1|645423_645885_+	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	80.8	5.3e-63
AVS02893.1|645916_646597_+	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	99.1	5.7e-122
AVS02894.1|646804_647869_+|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	99.2	2.3e-202
656900:656915	attR	AAGATATTTTAGATAA	NA	NA	NA	NA
>prophage 4
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	791062	803332	2790673	integrase,terminase,coat	Staphylococcus_phage(76.47%)	19	786436:786455	801355:801374
786436:786455	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
AVS03026.1|791062_791632_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	5.1e-100
AVS04880.1|791628_791841_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	87.1	3.3e-28
AVS03027.1|791972_792500_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.6	1.2e-87
AVS03028.1|792550_792769_-	hypothetical protein	NA	NA	NA	NA	NA
AVS03029.1|792786_793365_-	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.2e-27
AVS03030.1|793376_793718_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	8.4e-58
AVS03031.1|794064_794706_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.2e-110
AVS03032.1|794702_795083_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	97.6	4.5e-68
AVS03033.1|795392_797102_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	93.8	5.1e-305
AVS03034.1|797115_797985_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	94.1	4.6e-161
AVS03035.1|798051_798378_-	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	77.1	8.9e-41
AVS03036.1|798380_798590_-	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	98.6	1.6e-30
AVS03037.1|798582_798729_-	pathogenicity island protein	NA	NA	NA	NA	NA
AVS03038.1|798725_799043_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
AVS03039.1|799046_799259_-	XRE family transcriptional regulator	NA	A0A1W6JQE8	Staphylococcus_phage	82.8	4.9e-24
AVS03040.1|799421_800099_+	XRE family transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	31.8	1.2e-10
AVS03041.1|800115_801288_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.7	7.8e-220
AVS03042.1|801356_802973_-	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	1.5e-157
801355:801374	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
AVS03043.1|803047_803332_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 5
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	2282454	2290274	2790673		Hokovirus(16.67%)	10	NA	NA
AVS04373.1|2282454_2283510_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AVS04374.1|2283509_2284196_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVS04375.1|2284170_2284644_-	DoxX family protein	NA	NA	NA	NA	NA
AVS04376.1|2284985_2285426_-	hypothetical protein	NA	NA	NA	NA	NA
AVS04377.1|2285705_2286290_-	hypothetical protein	NA	NA	NA	NA	NA
AVS04378.1|2286388_2287102_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
AVS04379.1|2287105_2287525_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AVS04380.1|2287526_2288195_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AVS04381.1|2288545_2289139_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
AVS04382.1|2289122_2290274_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 6
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	2303751	2318353	2790673		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
AVS04393.1|2303751_2304810_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
AVS04394.1|2305104_2305653_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AVS04395.1|2305636_2305849_+	hypothetical protein	NA	NA	NA	NA	NA
AVS04396.1|2306254_2307172_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	3.7e-07
AVS04397.1|2307452_2308958_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVS04398.1|2309019_2309268_-	hypothetical protein	NA	NA	NA	NA	NA
AVS04399.1|2309304_2309799_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.8e-52
AVS04400.1|2309818_2310685_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVS04401.1|2311069_2311336_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AVS04402.1|2311485_2311884_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVS04403.1|2311846_2313952_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AVS04404.1|2314069_2315041_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVS04405.1|2315486_2315642_+	hypothetical protein	NA	NA	NA	NA	NA
AVS04940.1|2315680_2316652_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AVS04406.1|2316638_2317595_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	7.2e-06
AVS04407.1|2317591_2318353_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 7
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	2489130	2541158	2790673	holin,protease,tRNA,bacteriocin	Streptococcus_phage(33.33%)	53	NA	NA
AVS04572.1|2489130_2490120_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AVS04573.1|2490414_2490810_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AVS04574.1|2491190_2491910_+	adaptor protein MecA	NA	NA	NA	NA	NA
AVS04575.1|2492030_2493017_+	competence protein CoiA	NA	NA	NA	NA	NA
AVS04576.1|2493064_2494873_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
AVS04577.1|2495333_2496140_-	DsbA family protein	NA	NA	NA	NA	NA
AVS04578.1|2496162_2496528_-	globin	NA	NA	NA	NA	NA
AVS04579.1|2496631_2497225_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
AVS04580.1|2497410_2497758_+	hypothetical protein	NA	NA	NA	NA	NA
AVS04581.1|2497774_2498410_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
AVS04582.1|2498426_2499236_+	NAD(+) kinase	NA	NA	NA	NA	NA
AVS04583.1|2499232_2500087_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AVS04584.1|2500107_2501493_+	magnesium transporter	NA	NA	NA	NA	NA
AVS04585.1|2501502_2503347_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AVS04586.1|2503624_2504395_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AVS04587.1|2504590_2505676_-	AI-2E family transporter	NA	NA	NA	NA	NA
AVS04588.1|2506017_2507586_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
AVS04589.1|2507728_2508487_+	esterase family protein	NA	NA	NA	NA	NA
AVS04590.1|2508685_2509195_+	hypothetical protein	NA	NA	NA	NA	NA
AVS04591.1|2509307_2510516_-	MFS transporter	NA	NA	NA	NA	NA
AVS04592.1|2510475_2511651_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA	NA
AVS04593.1|2512083_2513568_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
AVS04594.1|2513548_2513809_+	hypothetical protein	NA	NA	NA	NA	NA
AVS04595.1|2513808_2515371_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
AVS04596.1|2515672_2516476_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
AVS04597.1|2516691_2519016_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	27.4	2.1e-11
AVS04598.1|2519032_2520391_+	Ktr system potassium uptake protein D	NA	NA	NA	NA	NA
AVS04599.1|2520529_2522041_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AVS04600.1|2522529_2523099_-	competence protein ComK	NA	NA	NA	NA	NA
AVS04601.1|2523308_2523527_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
AVS04602.1|2523607_2524594_-	lipoate--protein ligase	NA	NA	NA	NA	NA
AVS04603.1|2524792_2524969_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
AVS04604.1|2524983_2525586_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS04943.1|2525887_2525965_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AVS04944.1|2526614_2526887_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AVS04605.1|2526930_2528895_+	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
AVS04606.1|2528897_2529218_+	hypothetical protein	NA	NA	NA	NA	NA
AVS04607.1|2529214_2529856_+|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.7	2.2e-19
AVS04608.1|2529943_2530234_-	hypothetical protein	NA	NA	NA	NA	NA
AVS04609.1|2530374_2530512_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
AVS04610.1|2530600_2530957_-	DoxX family protein	NA	NA	NA	NA	NA
AVS04611.1|2531445_2532405_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVS04612.1|2532450_2532582_-	hypothetical protein	NA	NA	NA	NA	NA
AVS04613.1|2532645_2532936_-	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AVS04614.1|2533025_2533577_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVS04615.1|2533627_2534566_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AVS04946.1|2534716_2534794_+	hypothetical protein	NA	NA	NA	NA	NA
AVS04945.1|2534897_2536109_+	isochorismate synthase	NA	NA	NA	NA	NA
AVS04616.1|2536095_2537769_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
AVS04617.1|2537755_2538559_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVS04618.1|2538551_2539373_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AVS04619.1|2539609_2539939_-|protease	cysteine protease	protease	NA	NA	NA	NA
AVS04620.1|2539976_2541158_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 8
CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	2561186	2569659	2790673		Synechococcus_phage(33.33%)	9	NA	NA
AVS04638.1|2561186_2561669_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	1.2e-20
AVS04639.1|2561655_2562780_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVS04640.1|2562783_2563488_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.8e-47
AVS04641.1|2563487_2563751_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVS04642.1|2563752_2564424_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVS04643.1|2564416_2566606_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
AVS04644.1|2566584_2568069_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	5.5e-45
AVS04645.1|2568061_2569090_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	6.5e-61
AVS04646.1|2569092_2569659_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
