The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	4621	47682	2913744	head,holin,protease,transposase,tail,capsid,terminase,portal	Staphylococcus_prophage(50.0%)	65	NA	NA
AVS42483.1|4621_5794_-	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	100.0	2.0e-215
AVS42484.1|5807_6227_-	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
AVS42485.1|6756_7725_-	bi-component leukocidin LukMF' subunit F'	NA	Q9MBN2	Staphylococcus_prophage	100.0	2.0e-181
AVS42486.1|7726_8653_-	bi-component leukocidin LukMF' subunit M	NA	Q9MBN3	Staphylococcus_prophage	100.0	1.4e-176
AVS42487.1|9000_9756_-	CHAP domain-containing protein	NA	Q9MBN4	Staphylococcus_prophage	100.0	3.4e-152
AVS42488.1|9767_10022_-|holin	phage holin	holin	Q9MBN5	Staphylococcus_prophage	100.0	5.3e-41
AVS42489.1|10560_10857_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AVS42490.1|10914_11202_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AVS42491.1|11248_11401_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	2.0e-19
AVS42492.1|11390_15176_-	hypothetical protein	NA	Q9MBN9	Staphylococcus_prophage	100.0	0.0e+00
AVS42493.1|15191_16682_-|tail	phage tail protein	tail	Q9MBP0	Staphylococcus_prophage	100.0	1.4e-298
AVS42494.1|16681_21331_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	97.7	0.0e+00
AVS42495.1|21387_21510_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
AVS42496.1|21569_22016_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
AVS42497.1|22080_23034_-|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	99.7	1.8e-174
AVS42498.1|23034_23415_-	hypothetical protein	NA	Q9MBP5	Staphylococcus_prophage	100.0	3.4e-68
AVS42499.1|23411_23789_-	hypothetical protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
AVS42500.1|23788_24088_-|head,tail	head-tail adaptor protein	head,tail	D2JLF1	Staphylococcus_phage	99.0	1.2e-52
AVS42501.1|24114_25761_-|transposase	IS1182-like element ISSau3 family transposase	transposase	Q9MBP7	Staphylococcus_prophage	99.8	1.0e-294
AVS42502.1|26025_26367_-|head,tail	phage head-tail adapter protein	head,tail	Q9MBP8	Staphylococcus_prophage	100.0	6.9e-60
AVS42503.1|26375_26534_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
AVS42504.1|26569_27817_-|capsid	phage major capsid protein	capsid	D2JLE8	Staphylococcus_phage	100.0	1.7e-201
AVS42505.1|27904_28489_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
AVS45166.1|28481_29672_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
AVS42506.1|29737_29977_-	hypothetical protein	NA	O80042	Staphylococcus_phage	100.0	7.0e-35
AVS42507.1|29951_31646_-|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
AVS42508.1|31648_32116_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
AVS45167.1|32246_32591_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
AVS42509.1|32606_33059_-	hypothetical protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
AVS42510.1|33173_33635_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.6e-72
AVS42511.1|33541_33754_+	hypothetical protein	NA	NA	NA	NA	NA
AVS42512.1|33657_33858_-	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
AVS42513.1|33857_34007_-	transcriptional regulator	NA	Q9MBQ7	Staphylococcus_prophage	100.0	3.7e-18
AVS42514.1|34006_34399_-	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	100.0	2.8e-65
AVS42515.1|34382_34619_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
AVS42516.1|34643_34880_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
AVS42517.1|34916_35453_-	dUTPase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AVS42518.1|35445_35694_-	DUF1024 domain-containing protein	NA	Q9MBR1	Staphylococcus_prophage	100.0	3.1e-38
AVS42519.1|35686_35971_-	hypothetical protein	NA	Q9MBR2	Staphylococcus_prophage	98.9	1.4e-45
AVS42520.1|35985_36234_-	hypothetical protein	NA	S4V683	Staphylococcus_phage	100.0	3.2e-43
AVS42521.1|36234_36606_-	hypothetical protein	NA	Q9MBR4	Staphylococcus_prophage	100.0	2.7e-54
AVS42522.1|36617_36875_-	XRE family transcriptional regulator	NA	Q9MBR5	Staphylococcus_prophage	100.0	5.4e-41
AVS42523.1|36875_37061_-	DUF3113 domain-containing protein	NA	Q9MBR6	Staphylococcus_prophage	100.0	9.2e-27
AVS42524.1|37065_37470_-	DUF1064 domain-containing protein	NA	Q9MBR7	Staphylococcus_prophage	100.0	5.4e-72
AVS42525.1|37870_38644_-	DNA replication protein DnaC	NA	C5I645	Staphylococcus_phage	99.2	1.5e-142
AVS42526.1|38653_39457_-	replication protein	NA	Q9MBR9	Staphylococcus_prophage	100.0	1.5e-121
AVS42527.1|39428_40124_-	hypothetical protein	NA	Q9MBS0	Staphylococcus_prophage	100.0	2.3e-134
AVS42528.1|40137_40566_-	single-stranded DNA-binding protein	NA	A0A2H4JHI1	uncultured_Caudovirales_phage	98.6	2.5e-59
AVS42529.1|40565_41204_-	single-stranded DNA-binding protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
AVS42530.1|41203_41683_-	siphovirus superfamily	NA	Q9MBS3	Staphylococcus_prophage	100.0	8.1e-83
AVS42531.1|41697_41958_-	DUF1108 domain-containing protein	NA	Q9MBS4	Staphylococcus_prophage	100.0	1.5e-43
AVS42532.1|42051_42372_-	hypothetical protein	NA	Q9MBS5	Staphylococcus_prophage	100.0	1.6e-55
AVS42533.1|42372_42540_-	DUF1270 domain-containing protein	NA	Q9MBS6	Staphylococcus_prophage	100.0	6.2e-22
AVS42534.1|42532_42754_-	hypothetical protein	NA	Q9MBS7	Staphylococcus_prophage	100.0	1.5e-31
AVS42535.1|42825_43056_+	hypothetical protein	NA	Q9MBS8	Staphylococcus_prophage	100.0	3.0e-35
AVS42536.1|43222_44020_-	phage antirepressor Ant	NA	Q9MBT0	Staphylococcus_prophage	100.0	1.7e-146
AVS42537.1|44076_44286_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
AVS42538.1|44278_44419_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
AVS42539.1|44433_44877_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
AVS42540.1|44889_45129_-	XRE family transcriptional regulator	NA	Q9MBT3	Staphylococcus_prophage	100.0	8.0e-39
AVS42541.1|45300_46011_+	XRE family transcriptional regulator	NA	Q9MBT4	Staphylococcus_prophage	100.0	2.6e-130
AVS42542.1|46165_46351_+	hypothetical protein	NA	A0A1X9H0K5	Staphylococcus_phage	100.0	1.1e-24
AVS45168.1|46440_46836_+	hypothetical protein	NA	I1W601	Staphylococcus_phage	100.0	1.4e-69
AVS42543.1|46924_47071_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
AVS42544.1|47067_47682_-	ATPase	NA	Q9MBT7	Staphylococcus_prophage	100.0	1.0e-106
>prophage 2
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	1210259	1273356	2913744	protease,head,holin,integrase,transposase,tail,capsid,terminase,portal	Staphylococcus_phage(81.82%)	80	1203339:1203356	1257202:1257219
1203339:1203356	attL	GAAGAAAAACAAAGTGAA	NA	NA	NA	NA
AVS43584.1|1210259_1211906_+|transposase	IS1182 family transposase ISSau3	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
AVS43585.1|1211910_1212132_-	hypothetical protein	NA	NA	NA	NA	NA
AVS43586.1|1212130_1213180_+	ABC transporter permease	NA	NA	NA	NA	NA
AVS43587.1|1213192_1213870_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	1.2e-31
AVS43588.1|1214028_1214169_-	hypothetical protein	NA	NA	NA	NA	NA
AVS43589.1|1214158_1215109_+	transcriptional regulator	NA	NA	NA	NA	NA
AVS43590.1|1215451_1216570_+	carbohydrate kinase	NA	NA	NA	NA	NA
AVS43591.1|1216544_1217468_+	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA	NA
AVS43592.1|1217478_1218699_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
AVS43593.1|1218803_1220336_-	Na+/proline symporter	NA	NA	NA	NA	NA
AVS43594.1|1220375_1221257_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
AVS43595.1|1221414_1222275_+	ROK family protein	NA	NA	NA	NA	NA
AVS43596.1|1222551_1223352_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVS43597.1|1223491_1224160_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
AVS43598.1|1224285_1225599_-	histidine transporter	NA	NA	NA	NA	NA
AVS43599.1|1226015_1227953_+	lipase	NA	NA	NA	NA	NA
AVS43600.1|1228043_1229249_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.5	2.5e-221
AVS43601.1|1229374_1229989_+	ATPase	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
AVS43602.1|1229985_1230132_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	95.8	9.8e-16
AVS43603.1|1230446_1231367_-	exonuclease	NA	B5WZL1	Staphylococcus_phage	100.0	2.5e-173
AVS43604.1|1231382_1231997_-	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	100.0	9.0e-111
AVS43605.1|1232168_1232396_+	BetR domain protein	NA	B5WZL3	Staphylococcus_phage	100.0	3.3e-34
AVS43606.1|1232992_1233136_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AVS43607.1|1233125_1233335_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AVS43608.1|1233390_1233636_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
AVS43609.1|1233604_1233970_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	99.2	1.2e-62
AVS43610.1|1234024_1234240_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
AVS43611.1|1234264_1234528_+	helix-turn-helix domain-containing protein	NA	B7T0G2	Staphylococcus_virus	100.0	2.8e-45
AVS43612.1|1234539_1234701_+	DUF1270 domain-containing protein	NA	Q4ZDR6	Staphylococcus_virus	98.1	1.9e-20
AVS43613.1|1234782_1235106_+	TrmB family transcriptional regulator	NA	A0A2I6PF12	Staphylococcus_phage	94.4	1.6e-50
AVS43614.1|1235120_1235483_+	hypothetical protein	NA	Q4ZCH9	Staphylococcus_virus	99.2	1.9e-55
AVS43615.1|1235479_1236646_+	DUF2800 domain-containing protein	NA	B5WZM3	Staphylococcus_phage	98.2	1.6e-217
AVS43616.1|1236672_1237227_+	DUF2815 domain-containing protein	NA	M9QRS1	Staphylococcus_phage	100.0	1.4e-99
AVS45219.1|1237295_1239248_+	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	99.8	0.0e+00
AVS43617.1|1239260_1239446_+	DUF3113 domain-containing protein	NA	A0A2I6PEM8	Staphylococcus_phage	98.4	2.1e-26
AVS43618.1|1239445_1239847_+	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
AVS43619.1|1240106_1240307_+	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	98.5	6.2e-29
AVS43620.1|1240315_1240564_+	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	100.0	1.8e-41
AVS43621.1|1240578_1240863_+	hypothetical protein	NA	Q9MBR2	Staphylococcus_prophage	98.9	1.4e-45
AVS43622.1|1240855_1241110_+	DUF1024 domain-containing protein	NA	A0A2I6PDI5	Staphylococcus_phage	91.7	3.0e-36
AVS43623.1|1241072_1241267_+	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	100.0	2.9e-23
AVS43624.1|1241259_1241793_+	dUTP pyrophosphatase	NA	Q4ZDW8	Staphylococcus_virus	95.5	5.3e-91
AVS43625.1|1241829_1242036_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	77.9	8.4e-21
AVS43626.1|1242032_1242236_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
AVS43627.1|1242228_1242465_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	98.7	9.6e-37
AVS43628.1|1242448_1242841_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.5	1.2e-63
AVS43629.1|1242840_1242993_+	transcriptional regulator	NA	A7TWI2	Staphylococcus_phage	98.0	2.6e-19
AVS43630.1|1243060_1243261_+	DUF1514 domain-containing protein	NA	Q9B0E8	Staphylococcus_virus	100.0	3.8e-26
AVS43631.1|1243312_1245760_+	hypothetical protein	NA	M1RZC5	Staphylococcus_phage	99.0	0.0e+00
AVS43632.1|1245705_1245906_-	hypothetical protein	NA	Q4ZCN1	Staphylococcus_virus	98.5	1.9e-30
AVS43633.1|1245862_1245967_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
AVS43634.1|1246100_1246391_+	VRR-NUC domain-containing protein	NA	A7TWI5	Staphylococcus_phage	100.0	4.9e-51
AVS43635.1|1246371_1247739_+	ATP-dependent helicase	NA	A7TWI6	Staphylococcus_phage	100.0	1.2e-264
AVS43636.1|1247751_1248189_+	transcriptional regulator	NA	A7TWI7	Staphylococcus_phage	100.0	6.1e-77
AVS43637.1|1248345_1248678_+	HNH endonuclease	NA	A7TWI8	Staphylococcus_phage	97.8	3.1e-49
AVS43638.1|1248789_1249095_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AVS43639.1|1249084_1250776_+|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	100.0	0.0e+00
AVS43640.1|1250780_1252019_+|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	99.8	3.4e-234
AVS43641.1|1252002_1252776_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AVS45220.1|1252787_1253951_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	99.5	4.7e-217
AVS43642.1|1254019_1254298_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AVS43643.1|1254309_1254642_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
AVS43644.1|1254638_1255040_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
AVS43645.1|1255040_1255436_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
AVS43646.1|1255470_1256112_+|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AVS43647.1|1256203_1256659_+|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AVS43648.1|1256716_1257067_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AVS43649.1|1257108_1257267_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
1257202:1257219	attR	GAAGAAAAACAAAGTGAA	NA	NA	NA	NA
AVS43650.1|1257280_1263481_+|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	97.9	0.0e+00
AVS43651.1|1263480_1264305_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AVS43652.1|1264313_1265897_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AVS43653.1|1265896_1266187_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AVS43654.1|1266202_1268113_+	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
AVS43655.1|1268112_1269579_+	DUF2479 domain-containing protein	NA	M1TB09	Staphylococcus_phage	100.0	2.7e-254
AVS43656.1|1269578_1269968_+	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AVS43657.1|1269960_1270125_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AVS43658.1|1270170_1270470_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AVS43659.1|1270605_1271043_+|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	96.6	5.9e-72
AVS43660.1|1271023_1272469_+	CHAP domain-containing protein	NA	A0EWV1	Staphylococcus_virus	98.8	5.0e-293
AVS43661.1|1273056_1273356_+	hypothetical protein	NA	A7TWL2	Staphylococcus_phage	95.7	9.9e-47
>prophage 3
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	1669405	1677225	2913744		Hokovirus(16.67%)	10	NA	NA
AVS44012.1|1669405_1670461_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AVS44013.1|1670460_1671147_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVS44014.1|1671121_1671595_-	DoxX family protein	NA	NA	NA	NA	NA
AVS44015.1|1671936_1672377_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44016.1|1672656_1673241_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44017.1|1673339_1674053_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AVS44018.1|1674056_1674476_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AVS44019.1|1674477_1675146_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AVS44020.1|1675496_1676090_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	3.4e-38
AVS44021.1|1676073_1677225_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	1691114	1705252	2913744		uncultured_Caudovirales_phage(50.0%)	15	NA	NA
AVS44032.1|1691114_1692173_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
AVS44033.1|1692331_1692874_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AVS44034.1|1693425_1694343_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
AVS44035.1|1694433_1694535_+	hypothetical protein	NA	NA	NA	NA	NA
AVS44036.1|1694612_1696118_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVS44037.1|1696179_1696428_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44038.1|1696457_1696958_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
AVS44039.1|1696977_1697844_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVS44040.1|1698228_1698378_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AVS44041.1|1698645_1699044_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVS44042.1|1699006_1701112_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AVS44043.1|1701231_1702203_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVS44044.1|1702579_1703551_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
AVS44045.1|1703537_1704494_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
AVS44046.1|1704490_1705252_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	1884208	1930748	2913744	protease,holin,tRNA,bacteriocin,transposase	Streptococcus_phage(28.57%)	43	NA	NA
AVS44214.1|1884208_1885776_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
AVS44215.1|1886071_1887718_+|transposase	IS5/IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.5	5.9e-290
AVS44216.1|1887744_1888734_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AVS44217.1|1889028_1889424_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AVS44218.1|1889794_1890514_+	adaptor protein MecA	NA	NA	NA	NA	NA
AVS44219.1|1890634_1891621_+	competence protein CoiA	NA	NA	NA	NA	NA
AVS44220.1|1891668_1893477_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	1.2e-46
AVS44221.1|1893936_1894743_-	DsbA family protein	NA	NA	NA	NA	NA
AVS44222.1|1894765_1895131_-	globin	NA	NA	NA	NA	NA
AVS44223.1|1895234_1895828_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
AVS44224.1|1896013_1896361_+	hypothetical protein	NA	NA	NA	NA	NA
AVS44225.1|1896377_1897013_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
AVS44226.1|1897029_1897839_+	NAD(+) kinase	NA	NA	NA	NA	NA
AVS44227.1|1897835_1898690_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AVS44228.1|1898710_1900096_+	magnesium transporter	NA	NA	NA	NA	NA
AVS44229.1|1900105_1901950_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AVS44230.1|1902227_1902998_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AVS44231.1|1903193_1904279_-	AI-2E family transporter	NA	NA	NA	NA	NA
AVS44232.1|1904620_1906189_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
AVS44233.1|1906331_1907090_+	esterase family protein	NA	NA	NA	NA	NA
AVS44234.1|1907255_1907981_+	hypothetical protein	NA	NA	NA	NA	NA
AVS44235.1|1907982_1908834_+	base excision DNA repair protein	NA	NA	NA	NA	NA
AVS44236.1|1909576_1910086_+	hypothetical protein	NA	NA	NA	NA	NA
AVS44237.1|1910198_1911407_-	MFS transporter	NA	NA	NA	NA	NA
AVS44238.1|1911366_1912542_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA	NA
AVS44239.1|1912973_1914458_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
AVS44240.1|1914438_1914699_+	hypothetical protein	NA	NA	NA	NA	NA
AVS44241.1|1914698_1916261_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.3	3.8e-36
AVS44242.1|1916562_1917366_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
AVS44243.1|1917584_1919909_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	26.8	4.0e-10
AVS44244.1|1919925_1921284_+	Ktr system potassium uptake protein D	NA	NA	NA	NA	NA
AVS44245.1|1921422_1922934_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AVS44246.1|1923422_1923992_-	competence protein ComK	NA	NA	NA	NA	NA
AVS44247.1|1924201_1924420_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
AVS44248.1|1924500_1925487_-	lipoate--protein ligase	NA	NA	NA	NA	NA
AVS44249.1|1925685_1925862_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
AVS44250.1|1925876_1926479_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS45247.1|1926779_1926857_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AVS44251.1|1927395_1927497_+	hypothetical protein	NA	NA	NA	NA	NA
AVS45248.1|1927506_1927779_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AVS44252.1|1927822_1929787_+	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
AVS44253.1|1929789_1930110_+	hypothetical protein	NA	NA	NA	NA	NA
AVS44254.1|1930106_1930748_+|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.7	2.9e-19
>prophage 6
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	1963725	1972198	2913744		Synechococcus_phage(33.33%)	9	NA	NA
AVS44286.1|1963725_1964208_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
AVS44287.1|1964194_1965319_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVS44288.1|1965322_1966027_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
AVS44289.1|1966026_1966290_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVS44290.1|1966291_1966963_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVS44291.1|1966955_1969145_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
AVS44292.1|1969123_1970608_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
AVS44293.1|1970600_1971629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
AVS44294.1|1971631_1972198_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 7
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	2521967	2530279	2913744	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AVS44798.1|2521967_2522753_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AVS44799.1|2522878_2523769_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AVS44800.1|2523778_2525125_-	ATP-dependent helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
AVS44801.1|2525238_2526339_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
AVS44802.1|2526341_2527019_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AVS44803.1|2527149_2528256_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AVS44804.1|2528479_2530279_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 8
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	2573784	2631581	2913744	protease,transposase,tRNA	uncultured_Mediterranean_phage(15.79%)	54	NA	NA
AVS44849.1|2573784_2575053_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	31.7	4.0e-36
AVS44850.1|2575064_2575988_-	U32 family peptidase	NA	NA	NA	NA	NA
AVS44851.1|2575990_2576629_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
AVS44852.1|2576913_2577222_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
AVS44853.1|2577236_2577665_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AVS44854.1|2577668_2577929_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
AVS44855.1|2577991_2580622_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
AVS44856.1|2580964_2583442_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
AVS44857.1|2583443_2584112_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AVS44858.1|2584793_2585912_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AVS44859.1|2585912_2587055_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
AVS44860.1|2587364_2588378_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AVS44861.1|2588614_2588761_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44862.1|2588800_2588983_-	CsbD family protein	NA	NA	NA	NA	NA
AVS44863.1|2589082_2589505_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AVS44864.1|2589589_2590864_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.9	6.3e-106
AVS44865.1|2591024_2591798_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AVS44866.1|2591797_2591926_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44867.1|2592258_2594025_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
AVS44868.1|2594040_2595303_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AVS44869.1|2595763_2596639_-	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
AVS44870.1|2596635_2597088_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AVS44871.1|2597099_2599289_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
AVS44872.1|2599716_2600235_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AVS44873.1|2600256_2602530_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
AVS44874.1|2602732_2605012_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AVS44875.1|2605286_2605547_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AVS44876.1|2605565_2606705_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AVS44877.1|2606727_2607753_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVS44878.1|2607754_2608759_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AVS44879.1|2608790_2609393_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AVS44880.1|2609406_2609862_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AVS44881.1|2609874_2611167_-	GTPase ObgE	NA	NA	NA	NA	NA
AVS44882.1|2611922_2612207_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AVS44883.1|2612218_2612539_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AVS44884.1|2612544_2612853_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AVS44885.1|2613145_2613676_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AVS44886.1|2613675_2614518_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AVS44887.1|2614717_2614837_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44888.1|2614910_2615384_-	DUF4930 domain-containing protein	NA	NA	NA	NA	NA
AVS44889.1|2615543_2615741_+	hypothetical protein	NA	NA	NA	NA	NA
AVS44890.1|2615856_2616141_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44891.1|2616433_2618008_-	Vga family ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	37.7	4.0e-70
AVS44892.1|2618324_2618708_-|transposase	transposase	transposase	NA	NA	NA	NA
AVS44893.1|2618708_2620607_-|transposase	transposase	transposase	NA	NA	NA	NA
AVS44894.1|2620603_2621689_-|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.2	5.8e-12
AVS44895.1|2621804_2622362_-	JAB domain-containing protein	NA	NA	NA	NA	NA
AVS44896.1|2622358_2623066_-	prepilin peptidase	NA	NA	NA	NA	NA
AVS44897.1|2623326_2624598_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AVS44898.1|2624610_2627241_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	3.7e-153
AVS44899.1|2627643_2628204_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AVS44900.1|2628426_2629500_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AVS44901.1|2629533_2629647_-	hypothetical protein	NA	NA	NA	NA	NA
AVS44902.1|2629934_2631581_+|transposase	IS1182-like element ISSau3 family transposase	transposase	Q9MBP7	Staphylococcus_prophage	99.8	1.0e-294
>prophage 9
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	2913744	2739597	2860566	2913744	protease,holin,head,tRNA,integrase,transposase,tail,capsid,plate,terminase,portal	Staphylococcus_phage(70.18%)	140	2809320:2809337	2864850:2864867
AVS44994.1|2739597_2746146_-	peptidase	NA	A0A2H4PQU6	Staphylococcus_phage	88.6	6.3e-295
AVS44995.1|2746469_2746781_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
AVS44996.1|2746802_2749220_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
AVS44997.1|2749508_2750690_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	3.6e-217
AVS44998.1|2750799_2751753_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
AVS44999.1|2751749_2752313_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
AVS45000.1|2752431_2752833_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVS45001.1|2753405_2754233_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVS45002.1|2754235_2754355_-	hypothetical protein	NA	NA	NA	NA	NA
AVS45003.1|2754366_2754558_-	hypothetical protein	NA	NA	NA	NA	NA
AVS45004.1|2754466_2755468_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
AVS45005.1|2755589_2756054_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	98.1	4.9e-69
AVS45006.1|2756066_2757248_-	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AVS45007.1|2757258_2757891_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
AVS45274.1|2757897_2758929_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
AVS45008.1|2759421_2760924_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
AVS45009.1|2761566_2761881_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
AVS45010.1|2761880_2763173_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
AVS45011.1|2763259_2764114_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AVS45012.1|2764389_2764614_-	hypothetical protein	NA	NA	NA	NA	NA
AVS45013.1|2764812_2765283_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
AVS45014.1|2765395_2765839_+	competence protein ComK	NA	NA	NA	NA	NA
AVS45015.1|2765825_2766269_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
AVS45016.1|2766566_2767202_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS45017.1|2767368_2767989_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS45018.1|2768446_2769160_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AVS45019.1|2769418_2769721_+	hypothetical protein	NA	NA	NA	NA	NA
AVS45020.1|2769975_2770341_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AVS45021.1|2770337_2770691_+	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
AVS45022.1|2770940_2771774_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
AVS45023.1|2771985_2772894_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
AVS45024.1|2773018_2774212_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AVS45025.1|2774583_2776176_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
AVS45275.1|2776468_2777215_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
AVS45026.1|2777219_2777693_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
AVS45027.1|2777758_2778016_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AVS45028.1|2778012_2779014_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
AVS45029.1|2779018_2780497_-	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
AVS45276.1|2780655_2781111_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
AVS45030.1|2781413_2782064_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
AVS45031.1|2782144_2783140_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
AVS45032.1|2783215_2783842_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
AVS45033.1|2783882_2784227_+	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
AVS45034.1|2784324_2784897_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
AVS45035.1|2785045_2786413_-	FRG domain-containing protein	NA	NA	NA	NA	NA
AVS45036.1|2786412_2786982_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
AVS45037.1|2787174_2787621_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVS45038.1|2787702_2787927_-	hypothetical protein	NA	NA	NA	NA	NA
AVS45039.1|2788071_2788167_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AVS45040.1|2788289_2788391_+	hypothetical protein	NA	NA	NA	NA	NA
AVS45041.1|2788967_2790535_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
AVS45042.1|2790671_2791115_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVS45043.1|2792081_2794502_+	hyaluronate lyase	NA	NA	NA	NA	NA
AVS45277.1|2794627_2794987_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVS45044.1|2795214_2795664_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVS45045.1|2795706_2797317_+	lipase	NA	NA	NA	NA	NA
AVS45046.1|2797331_2797631_+	secretion protein	NA	NA	NA	NA	NA
AVS45047.1|2797892_2799710_-	NTPase	NA	NA	NA	NA	NA
AVS45048.1|2799746_2800901_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
AVS45049.1|2800893_2802633_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.5	1.6e-285
AVS45050.1|2802812_2803532_-|protease	serine protease	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
AVS45051.1|2803701_2804418_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
AVS45052.1|2804581_2805298_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	64.7	5.3e-86
AVS45053.1|2805464_2806181_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
AVS45054.1|2806304_2807024_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
AVS45055.1|2807324_2807570_+	hypothetical protein	NA	NA	NA	NA	NA
AVS45056.1|2808038_2808554_+	hypothetical protein	NA	NA	NA	NA	NA
AVS45057.1|2808800_2810147_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.3	6.7e-66
2809320:2809337	attL	TTATTTAATGCTGAAACT	NA	NA	NA	NA
AVS45058.1|2810733_2810970_+	hypothetical protein	NA	NA	NA	NA	NA
AVS45059.1|2811914_2812106_+	hypothetical protein	NA	NA	NA	NA	NA
AVS45060.1|2812365_2813142_-	exotoxin	NA	NA	NA	NA	NA
AVS45061.1|2813425_2814181_-	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	40.4	1.9e-38
AVS45062.1|2814219_2815005_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	2.9e-45
AVS45063.1|2815158_2815887_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	39.8	1.3e-28
AVS45064.1|2815921_2816641_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	34.6	4.9e-23
AVS45065.1|2816922_2817687_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	40.8	1.5e-33
AVS45066.1|2818321_2818525_-	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	62.7	1.8e-15
AVS45067.1|2819067_2820513_-	CHAP domain-containing protein	NA	M9QQN5	Staphylococcus_phage	96.7	2.0e-286
AVS45068.1|2820493_2820931_-|holin	phage holin	holin	M9QTA6	Staphylococcus_phage	98.6	2.6e-72
AVS45069.1|2820981_2822994_-|tail	phage tail protein	tail	Q4ZA81	Staphylococcus_virus	95.5	0.0e+00
AVS45070.1|2823006_2824881_-	CHAP domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	97.0	0.0e+00
AVS45071.1|2825017_2825317_-	DUF2951 domain-containing protein	NA	B7T0E7	Staphylococcus_virus	100.0	2.5e-42
AVS45278.1|2825357_2825531_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
AVS45072.1|2825540_2825918_-	DUF2977 domain-containing protein	NA	B7T0E5	Staphylococcus_virus	96.0	6.4e-59
AVS45073.1|2825917_2827741_-|plate	phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	95.2	2.6e-283
AVS45074.1|2827740_2829639_-	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	91.0	0.0e+00
AVS45075.1|2829651_2831538_-	peptidase	NA	Q4ZAG4	Staphylococcus_virus	100.0	0.0e+00
AVS45076.1|2831548_2832484_-|tail	phage tail protein	tail	Q4ZB28	Staphylococcus_virus	100.0	6.3e-180
AVS45077.1|2832498_2835642_-|terminase	terminase	terminase	Q4ZB30	Staphylococcus_virus	99.6	9.4e-305
AVS45078.1|2835644_2835986_-	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	100.0	3.5e-56
AVS45079.1|2836006_2836501_-	hypothetical protein	NA	A7YGV7	Staphylococcus_virus	100.0	2.5e-87
AVS45080.1|2836562_2837123_-|tail	phage tail protein	tail	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
AVS45081.1|2837109_2837547_-	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	99.3	4.6e-77
AVS45082.1|2837559_2837973_-	hypothetical protein	NA	A0A0E3XCY8	Staphylococcus_phage	100.0	1.5e-77
AVS45083.1|2837959_2838295_-|head,tail	phage head-tail adapter protein	head,tail	A7YGU9	Staphylococcus_virus	99.1	3.0e-60
AVS45084.1|2838287_2838602_-|head,tail	phage head-tail adapter protein	head,tail	A7YGU8	Staphylococcus_virus	97.1	2.4e-51
AVS45085.1|2838601_2838928_-	Rho termination protein	NA	Q4ZAA2	Staphylococcus_virus	100.0	5.6e-51
AVS45086.1|2838944_2839757_-|capsid	major capsid protein	capsid	Q4ZAA4	Staphylococcus_virus	99.6	3.1e-143
AVS45087.1|2839773_2840364_-	hypothetical protein	NA	A0A0H4IP83	Staphylococcus_phage	83.7	9.4e-81
AVS45088.1|2840461_2841442_-|head	phage head morphogenesis protein	head	A0A0E3XC69	Staphylococcus_phage	98.5	2.5e-179
AVS45089.1|2841380_2842859_-|portal	phage portal protein	portal	A0A2H4PQK7	Staphylococcus_phage	99.8	2.3e-285
AVS45090.1|2842812_2844021_-|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	99.8	2.3e-235
AVS45279.1|2844013_2844331_-	hypothetical protein	NA	A0A2I6PCU5	Staphylococcus_phage	95.2	7.3e-48
AVS45091.1|2844676_2844931_+	hypothetical protein	NA	Q4ZB48	Staphylococcus_virus	81.0	7.9e-29
AVS45092.1|2844860_2845262_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
AVS45093.1|2845262_2845436_-	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
AVS45094.1|2845432_2845639_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	85.3	9.6e-25
AVS45095.1|2845635_2845881_-	hypothetical protein	NA	A9CR89	Staphylococcus_phage	100.0	6.5e-28
AVS45096.1|2845917_2846451_-	dUTP pyrophosphatase	NA	Q4ZDW8	Staphylococcus_virus	95.5	5.3e-91
AVS45097.1|2846443_2846692_-	DUF1024 domain-containing protein	NA	A7TWB0	Staphylococcus_phage	96.3	1.0e-36
AVS45280.1|2846684_2847050_-	acetyltransferase	NA	A7YGS3	Staphylococcus_virus	95.9	6.6e-61
AVS45098.1|2847668_2847875_-	hypothetical protein	NA	B7T0H4	Staphylococcus_virus	98.5	3.9e-34
AVS45099.1|2847888_2848578_-	methylase	NA	B7T0H3	Staphylococcus_virus	100.0	6.1e-132
AVS45100.1|2848574_2848775_-	hypothetical protein	NA	B7T0H2	Staphylococcus_virus	100.0	3.7e-29
AVS45101.1|2848777_2849035_-	DUF3310 domain-containing protein	NA	B7T0H1	Staphylococcus_virus	100.0	7.5e-43
AVS45102.1|2849034_2849397_-	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	78.3	2.4e-47
AVS45103.1|2849408_2849666_-	XRE family transcriptional regulator	NA	Q9MBR5	Staphylococcus_prophage	98.8	2.7e-40
AVS45104.1|2849666_2849852_-	DUF3113 domain-containing protein	NA	Q9MBR6	Staphylococcus_prophage	100.0	9.2e-27
AVS45105.1|2849856_2850261_-	DUF1064 domain-containing protein	NA	Q9MBR7	Staphylococcus_prophage	100.0	5.4e-72
AVS45106.1|2850271_2850493_-	hypothetical protein	NA	Q9G021	Staphylococcus_phage	98.6	4.9e-35
AVS45107.1|2850495_2850711_-	hypothetical protein	NA	A0A0E3XD74	Staphylococcus_phage	98.6	8.2e-35
AVS45108.1|2850707_2851949_-	damage-inducible protein	NA	C8CGZ3	Staphylococcus_phage	99.3	4.8e-228
AVS45109.1|2851945_2852302_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	98.3	5.3e-63
AVS45110.1|2852301_2853057_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	92.8	3.3e-131
AVS45111.1|2853049_2853724_-	hypothetical protein	NA	C8CGZ0	Staphylococcus_phage	98.7	3.4e-127
AVS45112.1|2853737_2854166_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	91.5	1.5e-64
AVS45113.1|2854165_2854789_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
AVS45114.1|2854781_2855003_-	DUF2483 domain-containing protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
AVS45115.1|2855012_2855273_-	DUF1108 domain-containing protein	NA	A0A0H4IP62	Staphylococcus_phage	95.3	4.9e-42
AVS45116.1|2855364_2855685_-	hypothetical protein	NA	A0A0K1LL36	Staphylococcus_phage	99.1	1.4e-54
AVS45117.1|2855685_2855853_-	DUF1270 domain-containing protein	NA	Q9MBS6	Staphylococcus_prophage	96.4	3.1e-21
AVS45118.1|2855866_2856076_-	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
AVS45119.1|2856088_2856802_-	phage repressor protein	NA	A0A059T7N7	Staphylococcus_phage	94.9	7.0e-123
AVS45120.1|2856989_2857193_-	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	100.0	4.7e-32
AVS45121.1|2857265_2857478_-	transcriptional regulator	NA	Q4ZAL9	Staphylococcus_virus	98.6	1.9e-31
AVS45122.1|2857630_2857945_+	XRE family transcriptional regulator	NA	Q4ZAM0	Staphylococcus_virus	100.0	5.7e-53
AVS45123.1|2857966_2858425_+	toxin	NA	B2ZYU2	Staphylococcus_phage	100.0	1.2e-83
AVS45124.1|2858445_2858937_+	hypothetical protein	NA	Q4ZBN8	Staphylococcus_phage	100.0	7.5e-84
AVS45125.1|2858940_2859456_+	hypothetical protein	NA	I1W624	Staphylococcus_phage	95.9	2.2e-33
AVS45126.1|2859516_2860566_+|integrase	site-specific integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	90.3	5.2e-183
2864850:2864867	attR	TTATTTAATGCTGAAACT	NA	NA	NA	NA
