The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028324	Massilia sp. ZMN-3 chromosome, complete genome	6337491	3387822	3452928	6337491	plate,transposase,protease	Escherichia_phage(25.0%)	42	NA	NA
AVR96794.1|3387822_3389166_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AVR96795.1|3390163_3390667_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AVR96796.1|3392196_3392688_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AVR96797.1|3392734_3393226_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AVR96798.1|3393229_3395074_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AVR96799.1|3395037_3396132_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AVR96800.1|3396147_3398805_+	type VI secretion system ATPase TssH	NA	A0A1C3S747	Escherichia_phage	31.6	4.4e-93
AVR96801.1|3399039_3399276_-	hypothetical protein	NA	NA	NA	NA	NA
AVR96802.1|3399857_3404726_-	type IV secretion protein Rhs	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	50.0	4.0e-44
AVR96803.1|3405001_3406915_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
AVR96804.1|3406981_3408022_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AVR96805.1|3408040_3408829_-	cell envelope biogenesis protein OmpA	NA	NA	NA	NA	NA
AVR96806.1|3408831_3409818_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
AVR99216.1|3409814_3413705_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
AVR96807.1|3413733_3414144_-	hypothetical protein	NA	NA	NA	NA	NA
AVR96808.1|3414241_3415039_-	peptidase M15	NA	NA	NA	NA	NA
AVR96809.1|3415296_3416205_+	hypothetical protein	NA	NA	NA	NA	NA
AVR96810.1|3416874_3417381_+	transcriptional regulator	NA	NA	NA	NA	NA
AVR96811.1|3417370_3419059_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	27.0	3.3e-38
AVR99217.1|3419131_3420052_+	hypothetical protein	NA	NA	NA	NA	NA
AVR96812.1|3420072_3420858_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AVR96813.1|3420857_3421418_+	thioesterase	NA	NA	NA	NA	NA
AVR96814.1|3421414_3422689_+	hypothetical protein	NA	NA	NA	NA	NA
AVR96815.1|3422770_3425098_+	diguanylate cyclase	NA	NA	NA	NA	NA
AVR96816.1|3425197_3425743_+	hypothetical protein	NA	NA	NA	NA	NA
AVR96817.1|3426462_3427317_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
AVR96818.1|3427313_3429623_-	formate dehydrogenase	NA	NA	NA	NA	NA
AVR96819.1|3429789_3430743_+	hypothetical protein	NA	NA	NA	NA	NA
AVR96820.1|3431030_3431501_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AVR96821.1|3431487_3433773_-	ABC transporter	NA	W8CYL7	Bacillus_phage	33.4	5.5e-60
AVR96822.1|3434002_3436183_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AVR96823.1|3436225_3438796_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AVR96824.1|3439010_3440105_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AVR96825.1|3440250_3440472_-	hypothetical protein	NA	NA	NA	NA	NA
AVR96826.1|3440639_3441890_+	heat-shock protein	NA	NA	NA	NA	NA
AVR96827.1|3441899_3442523_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA	NA
AVR96828.1|3442750_3444130_+	hypothetical protein	NA	NA	NA	NA	NA
AVR96829.1|3446213_3448412_+	S9 family peptidase	NA	NA	NA	NA	NA
AVR96830.1|3448568_3448868_-	hypothetical protein	NA	NA	NA	NA	NA
AVR96831.1|3448950_3449955_+	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
AVR96832.1|3450056_3451031_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AVR96833.1|3451221_3452928_+|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP028324	Massilia sp. ZMN-3 chromosome, complete genome	6337491	5663518	5671672	6337491	tRNA	Caulobacter_phage(16.67%)	8	NA	NA
AVR99376.1|5663518_5665333_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.4	8.1e-67
AVR98465.1|5665421_5665871_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A292GL36	Xanthomonas_phage	44.5	6.8e-23
AVR98466.1|5666002_5666215_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AVR98467.1|5666418_5667627_-	aminoacetone oxidase family FAD-binding enzyme	NA	NA	NA	NA	NA
AVR98468.1|5667755_5668292_+	superoxide dismutase [Cu-Zn] SodC2	NA	Q9MC02	Salmonella_phage	53.9	7.5e-37
AVR98469.1|5668437_5669415_-	DNA-binding protein YbiB	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	34.7	2.1e-24
AVR98470.1|5669490_5670549_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	47.9	1.2e-81
AVR98471.1|5670640_5671672_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	54.0	1.5e-97
>prophage 3
CP028324	Massilia sp. ZMN-3 chromosome, complete genome	6337491	5734926	5742652	6337491		Acinetobacter_phage(66.67%)	9	NA	NA
AVR98518.1|5734926_5736423_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	30.6	8.8e-43
AVR98519.1|5736424_5736988_+	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	5.1e-68
AVR98520.1|5736998_5738036_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	46.1	1.1e-76
AVR98521.1|5738046_5738688_+	lysine transporter LysE	NA	NA	NA	NA	NA
AVR98522.1|5738710_5739511_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	51.0	2.5e-60
AVR98523.1|5739513_5740002_+	DUF1579 domain-containing protein	NA	NA	NA	NA	NA
AVR98524.1|5740151_5740886_-	hypothetical protein	NA	A0A0P0I4A4	Acinetobacter_phage	38.1	2.0e-40
AVR98525.1|5741005_5741356_-	hypothetical protein	NA	NA	NA	NA	NA
AVR98526.1|5741473_5742652_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.9	5.5e-16
