assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	1	151947-154473	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Type III-D,Type III-B,Type III-A,Type III-C	GTTTCCGTCCCCTTACGGGGATTATGGTTCTTATC,GTTTCCGTCCCCTTACGGGGATTATGGTTCTTATC,GTTTCCGTCCCCTTACGGGGATTATGGTTCTTATC	35,35,35	0	0	NA	NA	NA:NA:NA	34,34,33	34	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|67aa|up_0|CP027570.1_151199_151400_-,NA	NA|249aa|up_9|CP027570.1_139571_140318_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|162aa|up_8|CP027570.1_140314_140800_-	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|482aa|up_7|CP027570.1_140796_142242_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|485aa|up_6|CP027570.1_142621_144076_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|387aa|up_5|CP027570.1_144108_145269_-	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional	NA|394aa|up_4|CP027570.1_145278_146460_-	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|959aa|up_3|CP027570.1_146628_149505_-	pfam11907, DUF3427, Domain of unknown function (DUF3427)	NA|133aa|up_2|CP027570.1_149514_149913_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|402aa|up_1|CP027570.1_149950_151156_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|67aa|up_0|CP027570.1_151199_151400_-	NA	csm6|451aa|down_0|CP027570.1_154882_156235_-	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	cas6|250aa|down_1|CP027570.1_156248_156998_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|394aa|down_2|CP027570.1_156991_158173_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|337aa|down_3|CP027570.1_158169_159180_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|228aa|down_4|CP027570.1_159183_159867_-	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3	csm2gr11|127aa|down_5|CP027570.1_159869_160250_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|841aa|down_6|CP027570.1_160267_162790_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|down_7|CP027570.1_162845_163151_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|332aa|down_8|CP027570.1_163159_164155_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|128aa|down_9|CP027570.1_164790_165174_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	2	164175-164504	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Type III-D,Type III-B,Type III-A,Type III-C	GTTTCCGTCCCCTTACGGGGATTATGGTTCTTATC,GTTTCCGTCCCCTTACGGGGATTATGGTTCTTATC,GTTTCCGTCCCCTTACGGGGATTATGGTTCTTATC	35,35,35	0	0	NA	NA	NA:NA:NA	4,4,3	4	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|67aa|up_9|CP027570.1_151199_151400_-,NA|79aa|down_2|CP027570.1_166427_166664_+,NA|99aa|down_4|CP027570.1_168045_168342_-,NA|110aa|down_5|CP027570.1_168352_168682_-	NA|67aa|up_9|CP027570.1_151199_151400_-	NA	csm6|451aa|up_8|CP027570.1_154882_156235_-	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	cas6|250aa|up_7|CP027570.1_156248_156998_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|394aa|up_6|CP027570.1_156991_158173_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|337aa|up_5|CP027570.1_158169_159180_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|228aa|up_4|CP027570.1_159183_159867_-	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3	csm2gr11|127aa|up_3|CP027570.1_159869_160250_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|841aa|up_2|CP027570.1_160267_162790_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|up_1|CP027570.1_162845_163151_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|332aa|up_0|CP027570.1_163159_164155_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|128aa|down_0|CP027570.1_164790_165174_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|358aa|down_1|CP027570.1_165306_166380_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|79aa|down_2|CP027570.1_166427_166664_+	NA	NA|402aa|down_3|CP027570.1_166724_167930_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|99aa|down_4|CP027570.1_168045_168342_-	NA	NA|110aa|down_5|CP027570.1_168352_168682_-	NA	NA|460aa|down_6|CP027570.1_169227_170607_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|811aa|down_7|CP027570.1_170616_173049_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|355aa|down_8|CP027570.1_173056_174121_-	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|172aa|down_9|CP027570.1_174124_174640_-	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	3	477847-477970	3	CRISPRCasFinder	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Type V-U3	TCCGTAGGGGCCGTCCTGTAAAGGCGGCCCGC	32	0	0	NA	NA	NA	1	1	TypeV-U3	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA,NA|436aa|down_3|CP027570.1_481219_482527_-,NA|134aa|down_8|CP027570.1_486539_486941_-	NA|762aa|up_9|CP027570.1_460088_462374_-	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional	NA|156aa|up_8|CP027570.1_462373_462841_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|261aa|up_7|CP027570.1_462840_463623_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|327aa|up_6|CP027570.1_463815_464796_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|356aa|up_5|CP027570.1_465046_466114_-	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in  bacterial endospore germination	c2c10_CAS-V-U3|409aa|up_4|CP027570.1_466260_467487_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|606aa|up_3|CP027570.1_467839_469657_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|259aa|up_2|CP027570.1_469814_470591_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|100aa|up_1|CP027570.1_470847_471147_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|278aa|up_0|CP027570.1_471151_471985_-	cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz	NA|261aa|down_0|CP027570.1_478843_479626_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|215aa|down_1|CP027570.1_479629_480274_+	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|263aa|down_2|CP027570.1_480288_481077_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|436aa|down_3|CP027570.1_481219_482527_-	NA	NA|312aa|down_4|CP027570.1_482516_483452_-	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_5|CP027570.1_483465_484812_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|302aa|down_6|CP027570.1_484823_485729_-	PRK05416, PRK05416, RNase adapter RapZ	NA|267aa|down_7|CP027570.1_485752_486553_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|134aa|down_8|CP027570.1_486539_486941_-	NA	NA|197aa|down_9|CP027570.1_487028_487619_-	pfam05103, DivIVA, DivIVA protein
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	4	800111-800253	4	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Orphan	TCCGTAGGGGCCGTCCTGTAAAGGCGGCCCGTTACGCGCTGAGGGCATCCC	51	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|83aa|up_0|CP027570.1_794060_794309_-,NA|487aa|down_3|CP027570.1_804168_805629_+	NA|353aa|up_9|CP027570.1_784942_786001_-	pfam01924, HypD, Hydrogenase formation hypA family	NA|70aa|up_8|CP027570.1_786000_786210_-	pfam01455, HupF_HypC, HupF/HypC family	NA|761aa|up_7|CP027570.1_786441_788724_-	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|345aa|up_6|CP027570.1_788725_789760_-	pfam00148, Oxidored_nitro, Nitrogenase component 1 type Oxidoreductase	NA|437aa|up_5|CP027570.1_789756_791067_-	pfam00148, Oxidored_nitro, Nitrogenase component 1 type Oxidoreductase	NA|252aa|up_4|CP027570.1_791063_791819_-	cd02040, NifH, nitrogenase component II NifH	NA|84aa|up_3|CP027570.1_791828_792080_-	TIGR03959, putative_iron-only_hydrogenase_system_regulator, putative iron-only hydrogenase system regulator	NA|419aa|up_2|CP027570.1_792420_793677_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|69aa|up_1|CP027570.1_793851_794058_+	COG1645, COG1645, Uncharacterized Zn-finger containing protein [General function prediction only]	NA|83aa|up_0|CP027570.1_794060_794309_-	NA	NA|117aa|down_0|CP027570.1_801142_801493_-	cd03171, SORL_Dfx_classI, Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin	NA|383aa|down_1|CP027570.1_801796_802945_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|261aa|down_2|CP027570.1_803068_803851_-	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase	NA|487aa|down_3|CP027570.1_804168_805629_+	NA	NA|528aa|down_4|CP027570.1_805936_807520_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|334aa|down_5|CP027570.1_807648_808650_-	pfam06180, CbiK, Cobalt chelatase (CbiK)	NA|171aa|down_6|CP027570.1_808983_809496_-	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|305aa|down_7|CP027570.1_809598_810513_-	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|448aa|down_8|CP027570.1_810540_811884_-	pfam13502, AsmA_2, AsmA-like C-terminal region	NA|682aa|down_9|CP027570.1_811873_813919_-	pfam12773, DZR, Double zinc ribbon
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	5	1141566-1141657	5	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Orphan	CGTGGGGCGTCCGCCAAATTTCCAAAATGT	30	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA,NA	NA|518aa|up_9|CP027570.1_1128720_1130274_+	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|305aa|up_8|CP027570.1_1130300_1131215_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|259aa|up_7|CP027570.1_1131240_1132017_+	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]	NA|429aa|up_6|CP027570.1_1132038_1133325_+	pfam06050, HGD-D, 2-hydroxyglutaryl-CoA dehydratase, D-component	NA|373aa|up_5|CP027570.1_1133324_1134443_+	pfam06050, HGD-D, 2-hydroxyglutaryl-CoA dehydratase, D-component	NA|383aa|up_4|CP027570.1_1134648_1135797_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|298aa|up_3|CP027570.1_1135933_1136827_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|654aa|up_2|CP027570.1_1137006_1138968_+	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell	NA|441aa|up_1|CP027570.1_1139460_1140783_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|147aa|up_0|CP027570.1_1141109_1141550_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|143aa|down_0|CP027570.1_1141688_1142117_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|216aa|down_1|CP027570.1_1142560_1143208_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|444aa|down_2|CP027570.1_1143243_1144575_+	PRK11921, PRK11921, anaerobic nitric oxide reductase flavorubredoxin	NA|410aa|down_3|CP027570.1_1144685_1145915_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|221aa|down_4|CP027570.1_1146046_1146709_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|265aa|down_5|CP027570.1_1146818_1147613_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|316aa|down_6|CP027570.1_1147614_1148562_+	TIGR00946, Uncharacterized_transporter_MTH_1382, he Auxin Efflux Carrier (AEC) Family	NA|393aa|down_7|CP027570.1_1148580_1149759_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|450aa|down_8|CP027570.1_1149852_1151202_-	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|638aa|down_9|CP027570.1_1151655_1153569_+	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	6	1294155-1294291	6	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Orphan	CCCTCAGCGCGTGGCGGGCCGCCTTTACAGGACGGCCCCTACGGA	45	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|75aa|up_2|CP027570.1_1289906_1290131_+,NA	NA|330aa|up_9|CP027570.1_1281297_1282287_+	pfam01384, PHO4, Phosphate transporter family	NA|159aa|up_8|CP027570.1_1282494_1282971_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|271aa|up_7|CP027570.1_1283085_1283898_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|302aa|up_6|CP027570.1_1283901_1284807_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|531aa|up_5|CP027570.1_1284833_1286426_+	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only]	NA|452aa|up_4|CP027570.1_1286426_1287782_+	cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily	NA|610aa|up_3|CP027570.1_1288054_1289884_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|75aa|up_2|CP027570.1_1289906_1290131_+	NA	NA|481aa|up_1|CP027570.1_1291150_1292593_+	TIGR02512, Periplasmic_hydrogenase_large_subunit, [FeFe] hydrogenase, group A	NA|333aa|up_0|CP027570.1_1292776_1293775_+	PRK09653, eutD, phosphotransacetylase	NA|94aa|down_0|CP027570.1_1300179_1300461_+	pfam01527, HTH_Tnp_1, Transposase	NA|305aa|down_1|CP027570.1_1300457_1301372_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|477aa|down_2|CP027570.1_1302376_1303807_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|227aa|down_3|CP027570.1_1303790_1304471_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|55aa|down_4|CP027570.1_1304984_1305149_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|146aa|down_5|CP027570.1_1305275_1305713_+	PRK14793, PRK14793, lipoprotein signal peptidase; Provisional	NA|306aa|down_6|CP027570.1_1305723_1306641_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|178aa|down_7|CP027570.1_1306656_1307190_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|330aa|down_8|CP027570.1_1307420_1308410_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|207aa|down_9|CP027570.1_1308425_1309046_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	8	1848485-1848568	8	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Orphan	GTAGGGGCTCGCACGTGGCGAGCCCGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|683aa|up_6|CP027570.1_1839943_1841992_+,NA	NA|502aa|up_9|CP027570.1_1833869_1835375_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|822aa|up_8|CP027570.1_1835551_1838017_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|229aa|up_7|CP027570.1_1839233_1839920_+	pfam11209, DUF2993, Protein of unknown function (DUF2993)	NA|683aa|up_6|CP027570.1_1839943_1841992_+	NA	NA|378aa|up_5|CP027570.1_1841984_1843118_+	TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB	NA|229aa|up_4|CP027570.1_1843114_1843801_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|296aa|up_3|CP027570.1_1843790_1844678_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|388aa|up_2|CP027570.1_1844679_1845843_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|386aa|up_1|CP027570.1_1845881_1847039_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|424aa|up_0|CP027570.1_1847174_1848446_+	PRK12297, obgE, GTPase CgtA; Reviewed	NA|98aa|down_0|CP027570.1_1848671_1848965_+	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	NA|377aa|down_1|CP027570.1_1848978_1850109_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|415aa|down_2|CP027570.1_1850124_1851369_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|214aa|down_3|CP027570.1_1851516_1852158_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|199aa|down_4|CP027570.1_1852115_1852712_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|323aa|down_5|CP027570.1_1852714_1853683_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|128aa|down_6|CP027570.1_1853713_1854097_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|285aa|down_7|CP027570.1_1854098_1854953_+	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|185aa|down_8|CP027570.1_1855338_1855893_+	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|274aa|down_9|CP027570.1_1855906_1856728_+	PRK07105, PRK07105, pyridoxamine kinase; Validated
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	9	1937904-1941599	3,9,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Type I-U, Type I-U?,Type I-C	GTCGCACCCTTCACGGGTGCGTGGATTGAAAT,GTCGCACCCTTCACGGGTGCGTGGATTGAAAT,GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	32,32,32	24	25	1937936-1937971|1938004-1938039|1938138-1938172|1938274-1938308|1938341-1938375|1938408-1938442|1938610-1938644|1938677-1938712|1938745-1938781|1938882-1938916|1938949-1938986|1939153-1939188|1939289-1939325|1939358-1939393|1939426-1939460|1939561-1939594|1939627-1939661|1939694-1939729|1939762-1939797|1939830-1939862|1939895-1939930|1939963-1939998|1939963-1939998|1940031-1940068|1940848-1940882	CP027570.1_1256846-1256881|CP027570.1_1395185-1395220|CP027570.1_1270808-1270842|CP027570.1_1270808-1270842|CP027570.1_1163344-1163378|CP027570.1_1156145-1156179|CP027570.1_1401072-1401106|CP027570.1_1398279-1398314|CP027570.1_1455757-1455793|CP027570.1_1319684-1319718|CP027570.1_1435537-1435574|CP027570.1_1387120-1387155|CP027570.1_1285812-1285848|CP027570.1_1313460-1313495|CP027570.1_1357382-1357416|CP027570.1_1335207-1335174|CP027570.1_1198399-1198433|CP027570.1_1372006-1372041|CP027570.1_1410352-1410387|CP027570.1_1339195-1339227|CP027570.1_1376076-1376111|CP027570.1_724271-724236|CP027570.1_1209281-1209316|CP027570.1_57751-57788|CP027570.1_1490752-1490718	I-C:I-C:I-C	54,54,54	54	TypeI-U,TypeI-U?,TypeI-C	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|62aa|up_8|CP027570.1_1926825_1927011_+,NA	NA|358aa|up_9|CP027570.1_1925684_1926758_+	PRK09736, PRK09736, 5-methylcytosine-specific restriction enzyme subunit McrC; Provisional	NA|62aa|up_8|CP027570.1_1926825_1927011_+	NA	NA|201aa|up_7|CP027570.1_1927108_1927711_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|168aa|up_6|CP027570.1_1927741_1928245_-	pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase	NA|863aa|up_5|CP027570.1_1928380_1930969_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|268aa|up_4|CP027570.1_1931151_1931955_+	sd00010, SLR, Sel1-like repeat	cas3|731aa|up_3|CP027570.1_1932074_1934267_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|218aa|up_2|CP027570.1_1934284_1934938_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|630aa|up_1|CP027570.1_1934934_1936824_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|298aa|up_0|CP027570.1_1936825_1937719_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|258aa|down_0|CP027570.1_1941872_1942646_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|461aa|down_1|CP027570.1_1942796_1944179_+	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|261aa|down_2|CP027570.1_1944339_1945122_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|334aa|down_3|CP027570.1_1945135_1946137_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|429aa|down_4|CP027570.1_1946302_1947589_+	pfam14559, TPR_19, Tetratricopeptide repeat	NA|176aa|down_5|CP027570.1_1947616_1948144_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|328aa|down_6|CP027570.1_1948158_1949142_+	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|372aa|down_7|CP027570.1_1949279_1950395_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|291aa|down_8|CP027570.1_1950375_1951248_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|152aa|down_9|CP027570.1_1951597_1952053_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	10	1999026-1999113	10	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Orphan	CGGCATCTTCTGCTAGCACATCGGC	25	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|151aa|up_9|CP027570.1_1990334_1990787_+,NA|130aa|up_1|CP027570.1_1997913_1998303_+,NA|93aa|up_0|CP027570.1_1998534_1998813_-,NA|482aa|down_0|CP027570.1_2000798_2002244_+,NA|124aa|down_1|CP027570.1_2002236_2002608_+,NA|230aa|down_2|CP027570.1_2002594_2003284_+,NA|255aa|down_3|CP027570.1_2003295_2004060_+,NA|458aa|down_5|CP027570.1_2005049_2006423_+,NA|124aa|down_7|CP027570.1_2014547_2014919_+	NA|151aa|up_9|CP027570.1_1990334_1990787_+	NA	NA|180aa|up_8|CP027570.1_1990792_1991332_+	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|128aa|up_7|CP027570.1_1991192_1991576_+	pfam00085, Thioredoxin, Thioredoxin	NA|206aa|up_6|CP027570.1_1991575_1992193_+	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|578aa|up_5|CP027570.1_1992466_1994200_+	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|305aa|up_4|CP027570.1_1994615_1995530_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|94aa|up_3|CP027570.1_1995526_1995808_-	pfam01527, HTH_Tnp_1, Transposase	NA|623aa|up_2|CP027570.1_1995876_1997745_+	pfam07902, Gp58, gp58-like protein	NA|130aa|up_1|CP027570.1_1997913_1998303_+	NA	NA|93aa|up_0|CP027570.1_1998534_1998813_-	NA	NA|482aa|down_0|CP027570.1_2000798_2002244_+	NA	NA|124aa|down_1|CP027570.1_2002236_2002608_+	NA	NA|230aa|down_2|CP027570.1_2002594_2003284_+	NA	NA|255aa|down_3|CP027570.1_2003295_2004060_+	NA	NA|328aa|down_4|CP027570.1_2004069_2005053_+	pfam01464, SLT, Transglycosylase SLT domain	NA|458aa|down_5|CP027570.1_2005049_2006423_+	NA	NA|2699aa|down_6|CP027570.1_2006441_2014538_+	NF032893, tail-700, PLxRFG domain-containing protein	NA|124aa|down_7|CP027570.1_2014547_2014919_+	NA	NA|189aa|down_8|CP027570.1_2015201_2015768_+	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains	NA|148aa|down_9|CP027570.1_2015767_2016211_+	TIGR04211, hypothetical_protein, SH3 domain protein
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	11	2183298-2184106	4,11,4	PILER-CR,CRISPRCasFinder,CRT	no	cas8f,cas5f,cas7f,cas6f,cas1,cas3f	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Type I-F	GGTATCTGCCGAGTAGGCAGTTTAGAAA,GGTATCTGCCGAGTAGGCAGTTTAGAAA,GGTATCTGCCGAGTAGGCAGTTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,13,13	13	TypeI-F	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA|181aa|up_7|CP027570.1_2175036_2175579_+,NA	NA|150aa|up_9|CP027570.1_2173756_2174206_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|268aa|up_8|CP027570.1_2174195_2174999_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|181aa|up_7|CP027570.1_2175036_2175579_+	NA	NA|221aa|up_6|CP027570.1_2175593_2176256_+	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|197aa|up_5|CP027570.1_2176268_2176859_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|169aa|up_4|CP027570.1_2176855_2177362_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|255aa|up_3|CP027570.1_2177390_2178155_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|211aa|up_2|CP027570.1_2178170_2178803_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|568aa|up_1|CP027570.1_2178978_2180682_-	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]	NA|384aa|up_0|CP027570.1_2180961_2182113_-	pfam07907, YibE_F, YibE/F-like protein	cas8f|384aa|down_0|CP027570.1_2184203_2185355_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|296aa|down_1|CP027570.1_2185351_2186239_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|down_2|CP027570.1_2186253_2187276_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|down_3|CP027570.1_2187272_2187839_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas1|328aa|down_4|CP027570.1_2189662_2190646_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1108aa|down_5|CP027570.1_2190626_2193950_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|296aa|down_6|CP027570.1_2194199_2195087_+	PRK11820, PRK11820, YicC family protein	NA|99aa|down_7|CP027570.1_2195086_2195383_+	PRK04323, PRK04323, hypothetical protein; Provisional	NA|205aa|down_8|CP027570.1_2195390_2196005_+	PRK00300, gmk, guanylate kinase; Provisional	NA|70aa|down_9|CP027570.1_2196020_2196230_+	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	12	2187990-2189638	5,12,5	PILER-CR,CRISPRCasFinder,CRT	no	cas8f,cas5f,cas7f,cas6f,cas1,cas3f	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Type I-F	GTTATCTGCCGCACAGGCAGTTTAGAAA,GTTATCTGCCGCACAGGCAGTTTAGAAA,GTTATCTGCCGCACAGGCAGTTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	26,27,27	27	TypeI-F	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA,NA	NA|197aa|up_9|CP027570.1_2176268_2176859_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|169aa|up_8|CP027570.1_2176855_2177362_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|255aa|up_7|CP027570.1_2177390_2178155_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|211aa|up_6|CP027570.1_2178170_2178803_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|568aa|up_5|CP027570.1_2178978_2180682_-	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]	NA|384aa|up_4|CP027570.1_2180961_2182113_-	pfam07907, YibE_F, YibE/F-like protein	cas8f|384aa|up_3|CP027570.1_2184203_2185355_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|296aa|up_2|CP027570.1_2185351_2186239_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|up_1|CP027570.1_2186253_2187276_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|up_0|CP027570.1_2187272_2187839_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas1|328aa|down_0|CP027570.1_2189662_2190646_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1108aa|down_1|CP027570.1_2190626_2193950_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|296aa|down_2|CP027570.1_2194199_2195087_+	PRK11820, PRK11820, YicC family protein	NA|99aa|down_3|CP027570.1_2195086_2195383_+	PRK04323, PRK04323, hypothetical protein; Provisional	NA|205aa|down_4|CP027570.1_2195390_2196005_+	PRK00300, gmk, guanylate kinase; Provisional	NA|70aa|down_5|CP027570.1_2196020_2196230_+	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6	NA|405aa|down_6|CP027570.1_2196246_2197461_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|421aa|down_7|CP027570.1_2197606_2198869_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|397aa|down_8|CP027570.1_2199168_2200359_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|786aa|down_9|CP027570.1_2200501_2202859_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated
GCA_003010495.1_ASM301049v1	CP027570	Megasphaera elsdenii DSM 20460 strain ATCC 25940 chromosome, complete genome	13	2370827-2373476	6,6,13	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	Unclear	ATTTCAATCCACGCACCCATGAAGGGTGCGAC,GTCGCACCCTTCATGGGTGCGTGGATTGAAAT,ATTTCAATCCACGCACCCATGAAGGGTGCGAC	32,32,32	13	13	2371398-2371432|2371533-2371566|2372740-2372772|2372805-2372838|2372871-2372906|2372939-2372974|2373007-2373042|2373075-2373109|2373142-2373176|2373209-2373244|2373277-2373312|2373345-2373379|2373412-2373444	CP027570.1_1487042-1487076|CP027570.1_1499122-1499089|CP027570.1_1455688-1455656|CP027570.1_1403640-1403607|CP027570.1_1445626-1445591|CP027570.1_1395697-1395662|CP027570.1_1405026-1404991|CP027570.1_1431063-1431029|CP027570.1_1329247-1329213|CP027570.1_1274788-1274753|CP027570.1_1239716-1239681|CP027570.1_1332284-1332250|CP027570.1_1312886-1312854	I-C:I-C:I-C	39,38,38	39	Unclear	c2c10_CAS-V-U3,cas14j,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT,cas14k,DEDDh,csa3,cas3,WYL,cas3HD,cas5,cas8c,cas7,cas8f,cas5f,cas7f,cas6f,cas3f,cas4	NA,NA	NA|305aa|up_9|CP027570.1_2361073_2361988_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|94aa|up_8|CP027570.1_2361984_2362266_-	pfam01527, HTH_Tnp_1, Transposase	NA|115aa|up_7|CP027570.1_2362749_2363094_-	PRK13386, fliH, flagellar assembly protein H; Provisional	NA|216aa|up_6|CP027570.1_2363783_2364431_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|722aa|up_5|CP027570.1_2364443_2366609_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|90aa|up_4|CP027570.1_2366605_2366875_-	pfam01817, CM_2, Chorismate mutase type II	NA|484aa|up_3|CP027570.1_2367083_2368535_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]	cas2|97aa|up_2|CP027570.1_2368702_2368993_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|up_1|CP027570.1_2369002_2370034_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|222aa|up_0|CP027570.1_2370030_2370696_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|412aa|down_0|CP027570.1_2374397_2375633_+	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|434aa|down_1|CP027570.1_2375876_2377178_-	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|241aa|down_2|CP027570.1_2377508_2378231_+	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|291aa|down_3|CP027570.1_2378407_2379280_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|355aa|down_4|CP027570.1_2379346_2380411_-	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|260aa|down_5|CP027570.1_2380421_2381201_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|276aa|down_6|CP027570.1_2381200_2382028_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|357aa|down_7|CP027570.1_2382020_2383091_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|253aa|down_8|CP027570.1_2383172_2383931_-	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|581aa|down_9|CP027570.1_2384108_2385851_-	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism]
