The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	715989	723810	2750737		Hokovirus(16.67%)	10	NA	NA
AVO68250.1|715989_717045_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AVO68251.1|717044_717731_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AVO68252.1|717705_718179_-	DoxX family protein	NA	NA	NA	NA	NA
AVO68253.1|718521_718962_-	hypothetical protein	NA	NA	NA	NA	NA
AVO68254.1|719241_719826_-	hypothetical protein	NA	NA	NA	NA	NA
AVO68255.1|719924_720638_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AVO68256.1|720641_721061_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AVO68257.1|721062_721731_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AVO68258.1|722081_722675_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AVO68259.1|722658_723810_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 2
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	735781	750366	2750737		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AVO68269.1|735781_736840_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AVO68270.1|737178_737721_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AVO68271.1|737833_737932_+	hypothetical protein	NA	NA	NA	NA	NA
AVO68272.1|738107_738275_+	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
AVO68273.1|738543_739461_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AVO68274.1|739551_739653_+	hypothetical protein	NA	NA	NA	NA	NA
AVO68275.1|739730_741236_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVO68276.1|741301_741547_-	hypothetical protein	NA	NA	NA	NA	NA
AVO68277.1|741576_742077_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AVO68278.1|742096_742963_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVO68279.1|743347_743614_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AVO68280.1|743763_744162_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVO68281.1|744124_746230_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AVO68282.1|746347_747319_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVO68283.1|747499_747655_+	hypothetical protein	NA	NA	NA	NA	NA
AVO70239.1|747693_748665_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AVO68284.1|748651_749608_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AVO68285.1|749604_750366_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	946380	1019315	2750737	bacteriocin,capsid,protease,integrase,portal,tail,head,holin,terminase	Staphylococcus_phage(77.61%)	93	949226:949252	993701:993727
AVO68474.1|946380_947943_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
AVO68475.1|948244_949048_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
949226:949252	attL	ATTAGGTGTTAATGTGTCATAATGATA	NA	NA	NA	NA
AVO68476.1|949336_950542_-|integrase	site-specific integrase	integrase	B7T0F2	Staphylococcus_virus	100.0	4.2e-221
AVO68477.1|950668_951292_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	1.3e-104
AVO68478.1|951490_951886_-	hypothetical protein	NA	I1W601	Staphylococcus_phage	99.2	3.2e-69
AVO68479.1|951914_952349_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	93.1	7.5e-19
AVO68480.1|952366_952828_-	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	4.9e-85
AVO68481.1|952840_953170_-	XRE family transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
AVO68482.1|953330_953522_+	XRE family transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
AVO68483.1|953609_953825_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	98.6	5.0e-32
AVO68484.1|953849_954113_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
AVO68485.1|954124_954286_+	DUF1270 domain-containing protein	NA	A0A059T7J6	Staphylococcus_phage	96.2	2.1e-19
AVO68486.1|954378_954639_+	DUF2482 domain-containing protein	NA	A0A0H3U2W4	Staphylococcus_phage	98.8	1.3e-39
AVO68487.1|954678_954939_+	hypothetical protein	NA	A0EWW8	Staphylococcus_phage	96.5	1.7e-42
AVO68488.1|954952_955315_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
AVO68489.1|955311_956478_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	99.0	2.2e-219
AVO68490.1|956503_957061_+	DUF2815 domain-containing protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
AVO70243.1|957128_959081_+	DNA polymerase	NA	M9QT72	Staphylococcus_phage	99.7	0.0e+00
AVO68491.1|959093_959279_+	DUF3113 domain-containing protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AVO68492.1|959278_959680_+	PVL family protein	NA	A7TWG8	Staphylococcus_phage	100.0	9.5e-69
AVO68493.1|959679_959937_+	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
AVO68494.1|959939_960140_+	hypothetical protein	NA	C5I650	Staphylococcus_phage	98.5	7.4e-30
AVO68495.1|960148_960397_+	hypothetical protein	NA	Q4ZCP1	Staphylococcus_virus	97.6	8.0e-42
AVO68496.1|960410_960821_+	hypothetical protein	NA	A0A1P8CN10	Staphylococcus_phage	69.6	8.0e-47
AVO68497.1|960817_961165_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AVO68498.1|961161_961470_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	94.1	1.2e-47
AVO68499.1|961462_961711_+	DUF1024 domain-containing protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
AVO68500.1|961703_962234_+	dUTP pyrophosphatase	NA	A0A0F6N3L0	Staphylococcus_phage	99.4	1.5e-93
AVO68501.1|962270_962459_+	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
AVO68502.1|962433_962634_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
AVO68503.1|962621_962789_+	transcriptional regulator	NA	A0A2I6PF16	Staphylococcus_phage	98.2	2.8e-22
AVO68504.1|962856_963057_+	DUF1514 domain-containing protein	NA	A0A2I6PEG6	Staphylococcus_phage	100.0	2.9e-26
AVO68505.1|963108_965556_+	hypothetical protein	NA	Q4ZCG0	Staphylococcus_virus	99.0	0.0e+00
AVO68506.1|965658_965763_-	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	100.0	9.4e-13
AVO70244.1|965896_966187_+	VRR-NUC domain-containing protein	NA	M1T308	Staphylococcus_phage	100.0	4.9e-51
AVO68507.1|966167_967535_+	DEAD/DEAH box helicase	NA	Q4ZCM9	Staphylococcus_virus	99.6	1.9e-262
AVO68508.1|967547_967985_+	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
AVO68509.1|968141_968456_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
AVO68510.1|968584_968890_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
AVO68511.1|968879_970571_+|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	99.8	0.0e+00
AVO68512.1|970575_971814_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
AVO68513.1|971797_972571_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	100.0	9.2e-137
AVO68514.1|972582_973746_+|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	99.7	2.7e-217
AVO68515.1|973814_974093_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	98.9	7.8e-46
AVO68516.1|974104_974437_+	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
AVO68517.1|974433_974835_+	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
AVO68518.1|974835_975231_+	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
AVO68519.1|975265_975907_+|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AVO68520.1|975998_976454_+|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AVO68521.1|976511_976862_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
AVO68522.1|976903_977062_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AVO68523.1|977075_983276_+|tail	phage tail tape measure protein	tail	A0A2I6PDD9	Staphylococcus_phage	99.5	0.0e+00
AVO68524.1|983275_984100_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AVO68525.1|984108_985692_+	peptidase	NA	Q4ZD01	Staphylococcus_virus	98.5	3.6e-305
AVO68526.1|985691_985982_+	hypothetical protein	NA	R4WEC3	Staphylococcus_phage	100.0	2.1e-49
AVO68527.1|985997_987908_+	hypothetical protein	NA	A0A2K9VBU3	Staphylococcus_phage	99.8	0.0e+00
AVO68528.1|987907_989374_+	hypothetical protein	NA	A0A2I6PE72	Staphylococcus_phage	99.8	5.8e-273
AVO68529.1|989373_989763_+	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AVO68530.1|989755_989920_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AVO68531.1|989965_990265_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AVO68532.1|990400_990703_+|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
AVO68533.1|990714_992169_+	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	100.0	3.0e-290
AVO68534.1|992487_993048_-	hypothetical protein	NA	Q4ZBG8	Staphylococcus_virus	69.6	2.2e-63
AVO68535.1|993741_996066_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	27.4	2.8e-11
993701:993727	attR	ATTAGGTGTTAATGTGTCATAATGATA	NA	NA	NA	NA
AVO68536.1|996082_997441_+	Ktr system potassium uptake protein D	NA	NA	NA	NA	NA
AVO68537.1|997579_999091_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AVO68538.1|999577_1000147_-	competence protein ComK	NA	NA	NA	NA	NA
AVO68539.1|1000356_1000575_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
AVO68540.1|1000655_1001642_-	lipoate--protein ligase	NA	NA	NA	NA	NA
AVO68541.1|1001840_1002017_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
AVO68542.1|1002031_1002634_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVO70245.1|1002933_1003011_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AVO68543.1|1003549_1003651_+	hypothetical protein	NA	NA	NA	NA	NA
AVO70246.1|1003660_1003933_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AVO68544.1|1003976_1005941_+	hypothetical protein	NA	NA	NA	NA	NA
AVO68545.1|1005943_1006264_+	hypothetical protein	NA	NA	NA	NA	NA
AVO68546.1|1006260_1006902_+|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.0	1.7e-19
AVO68547.1|1006989_1007280_-	hypothetical protein	NA	NA	NA	NA	NA
AVO68548.1|1007420_1007558_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
AVO68549.1|1007646_1008003_-	DoxX family protein	NA	NA	NA	NA	NA
AVO68550.1|1008490_1009450_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVO68551.1|1009495_1009627_-	hypothetical protein	NA	NA	NA	NA	NA
AVO68552.1|1009690_1009981_-	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AVO68553.1|1010070_1010622_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVO68554.1|1010673_1011612_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AVO68555.1|1011762_1011867_+	hypothetical protein	NA	NA	NA	NA	NA
AVO68556.1|1011943_1013155_+	isochorismate synthase	NA	NA	NA	NA	NA
AVO68557.1|1013141_1014815_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVO68558.1|1014801_1015605_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVO68559.1|1015597_1016419_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AVO68560.1|1016656_1016986_-	staphostatin B	NA	NA	NA	NA	NA
AVO68561.1|1017023_1018205_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
AVO68562.1|1018286_1019315_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.3e-16
>prophage 4
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	1038242	1046715	2750737		Synechococcus_phage(33.33%)	9	NA	NA
AVO68578.1|1038242_1038725_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
AVO68579.1|1038711_1039836_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVO68580.1|1039839_1040544_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AVO68581.1|1040543_1040807_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVO68582.1|1040808_1041480_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVO68583.1|1041472_1043662_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AVO68584.1|1043640_1045125_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
AVO68585.1|1045117_1046146_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AVO68586.1|1046148_1046715_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	1664485	1673528	2750737	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AVO69152.1|1664485_1665004_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AVO69153.1|1665025_1667299_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AVO69154.1|1667501_1669781_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AVO69155.1|1670055_1670316_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AVO69156.1|1670334_1671474_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AVO69157.1|1671496_1672522_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVO69158.1|1672523_1673528_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	1787574	1859085	2750737	protease,tRNA	Staphylococcus_phage(95.65%)	66	NA	NA
AVO69265.1|1787574_1788219_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AVO69266.1|1788233_1789025_-	phosphotransferase	NA	NA	NA	NA	NA
AVO69267.1|1789574_1790423_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
AVO69268.1|1790426_1791836_-	dipeptidase PepV	NA	NA	NA	NA	NA
AVO69269.1|1792393_1792816_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AVO69270.1|1792832_1793528_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AVO69271.1|1793524_1795186_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AVO69272.1|1795592_1796861_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
AVO69273.1|1796977_1803538_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	1.4e-305
AVO69274.1|1803863_1804175_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AVO69275.1|1804196_1806614_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AVO69276.1|1806901_1808083_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	2.1e-217
AVO69277.1|1808192_1809146_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AVO69278.1|1809142_1809706_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AVO69279.1|1809828_1810230_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVO69280.1|1810801_1811629_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVO69281.1|1811631_1811751_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69282.1|1811862_1812864_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AVO69283.1|1812985_1813450_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AVO69284.1|1813462_1814644_-	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
AVO69285.1|1814654_1815287_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AVO70271.1|1815293_1816325_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
AVO69286.1|1816817_1818320_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AVO69287.1|1818842_1819157_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AVO69288.1|1819156_1820449_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AVO69289.1|1820535_1821390_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AVO69290.1|1821665_1821890_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69291.1|1822088_1822559_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AVO69292.1|1822671_1823115_+	competence protein ComK	NA	NA	NA	NA	NA
AVO69293.1|1823101_1823545_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AVO69294.1|1823840_1824476_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVO69295.1|1824915_1825629_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AVO69296.1|1825888_1826191_+	hypothetical protein	NA	NA	NA	NA	NA
AVO69297.1|1826446_1826812_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AVO69298.1|1826808_1827162_+	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
AVO69299.1|1829400_1830234_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	2.3e-157
AVO69300.1|1830445_1831354_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	1.7e-137
AVO69301.1|1831475_1832672_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.2	6.3e-217
AVO69302.1|1833043_1834636_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AVO70272.1|1835013_1835760_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
AVO69303.1|1835764_1836238_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
AVO69304.1|1836303_1836561_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AVO69305.1|1836557_1837559_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AVO69306.1|1837563_1839042_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	4.0e-282
AVO70273.1|1839200_1839656_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
AVO69307.1|1839958_1840609_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
AVO69308.1|1840689_1841685_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AVO69309.1|1841759_1842386_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AVO69310.1|1842426_1842768_+	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AVO69311.1|1842868_1843441_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AVO69312.1|1845013_1845115_+	hypothetical protein	NA	NA	NA	NA	NA
AVO69313.1|1847367_1848612_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.5	4.8e-236
AVO69314.1|1848775_1848910_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69315.1|1848972_1849692_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AVO69316.1|1849793_1849901_+	hypothetical protein	NA	NA	NA	NA	NA
AVO69317.1|1849849_1850569_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AVO69318.1|1850689_1851409_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
AVO69319.1|1851466_1852189_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AVO69320.1|1852313_1853021_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
AVO69321.1|1853456_1853675_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69322.1|1853997_1854579_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	63.7	1.5e-51
AVO69323.1|1855051_1855270_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
AVO69324.1|1855525_1855999_+	hypothetical protein	NA	NA	NA	NA	NA
AVO69325.1|1856003_1856795_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AVO69326.1|1857164_1858148_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AVO69327.1|1858149_1859085_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 7
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	1865286	1869533	2750737		Staphylococcus_phage(66.67%)	6	NA	NA
AVO69334.1|1865286_1866042_-	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	41.4	4.6e-40
AVO69335.1|1866080_1866476_-	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	50.4	1.5e-26
AVO69336.1|1866450_1866852_-	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	37.9	1.5e-10
AVO69337.1|1867005_1867734_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
AVO69338.1|1867768_1868488_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
AVO69339.1|1868768_1869533_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	37.1	2.3e-31
>prophage 8
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2750737	1955144	2038597	2750737	capsid,protease,integrase,portal,tail,head,holin,terminase	Staphylococcus_phage(90.54%)	106	2004919:2004936	2029737:2029754
AVO69419.1|1955144_1956311_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
AVO69420.1|1956341_1956668_+	staphostatin A	NA	NA	NA	NA	NA
AVO69421.1|1956959_1957133_-	NETI motif-containing protein	NA	NA	NA	NA	NA
AVO69422.1|1957113_1957716_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AVO69423.1|1957986_1958808_-	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
AVO69424.1|1958800_1960270_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
AVO69425.1|1960453_1961530_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AVO69426.1|1961549_1962344_+	ACT domain-containing protein	NA	NA	NA	NA	NA
AVO69427.1|1962415_1962523_+	hypothetical protein	NA	NA	NA	NA	NA
AVO69428.1|1962533_1964096_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
AVO69429.1|1964300_1965398_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
AVO69430.1|1965766_1966327_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AVO69431.1|1966379_1967309_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AVO69432.1|1967501_1967675_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69433.1|1967726_1969106_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AVO69434.1|1969225_1970254_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69435.1|1970523_1970925_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
AVO69436.1|1971497_1971671_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69437.1|1972121_1973162_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AVO69438.1|1973218_1974061_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69439.1|1974057_1974615_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVO69440.1|1974674_1975199_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69441.1|1975319_1975883_+	thioredoxin family protein	NA	NA	NA	NA	NA
AVO69442.1|1975948_1976689_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
AVO69443.1|1976688_1977561_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
AVO69444.1|1977557_1978238_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
AVO69445.1|1978238_1979135_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
AVO69446.1|1979131_1979512_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVO69447.1|1979769_1979946_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69448.1|1980188_1980287_-	hypothetical protein	NA	NA	NA	NA	NA
AVO69449.1|1980485_1981772_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AVO69450.1|1982050_1982341_-	adherence protein Eap/Map	NA	NA	NA	NA	NA
AVO69451.1|1982355_1983786_-	protein map	NA	NA	NA	NA	NA
AVO69452.1|1984171_1984372_+	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AVO69453.1|1984743_1984923_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AVO69454.1|1984946_1985234_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	75.5	1.1e-18
AVO69455.1|1985237_1985498_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AVO69456.1|1985550_1985901_-	inhibitor	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
AVO69457.1|1986583_1987033_+	chemotaxis inhibitory protein	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
AVO69458.1|1988108_1988600_-	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
AVO69459.1|1988790_1989546_-	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	100.0	1.2e-152
AVO69460.1|1989557_1989812_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AVO69461.1|1989863_1989971_+	hypothetical protein	NA	NA	NA	NA	NA
AVO70278.1|1990023_1990200_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AVO69462.1|1990402_1991185_-	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
AVO69463.1|1991596_1991971_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
AVO69464.1|1992026_1992314_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
AVO69465.1|1992359_1992512_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
AVO69466.1|1992504_1996287_-	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
AVO69467.1|1996302_1997787_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
AVO69468.1|2002557_2002908_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AVO69469.1|2002957_2003182_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
AVO69470.1|2003223_2003868_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
AVO69471.1|2003868_2004276_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	99.3	7.9e-71
AVO69472.1|2004272_2004677_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
AVO69473.1|2004673_2005036_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2004919:2004936	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AVO69474.1|2005019_2005304_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AVO69475.1|2005293_2005578_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AVO69476.1|2005597_2006743_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AVO69477.1|2006766_2007504_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AVO69478.1|2007487_2008675_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	5.1e-219
AVO69479.1|2008690_2010352_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AVO69480.1|2010348_2010693_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AVO69481.1|2010822_2011122_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
AVO69482.1|2011353_2011770_-	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AVO69483.1|2011797_2011998_-	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
AVO69484.1|2011997_2012147_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AVO69485.1|2012143_2012350_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
AVO69486.1|2012346_2012592_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
AVO69487.1|2012628_2013165_-	dUTPase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AVO69488.1|2013161_2013407_-	hypothetical protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
AVO69489.1|2013421_2013670_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
AVO69490.1|2013666_2013924_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
AVO69491.1|2013923_2014295_-	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	90.2	3.1e-50
AVO69492.1|2014307_2014712_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
AVO69493.1|2014720_2014939_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AVO69494.1|2014945_2015839_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AVO69495.1|2015868_2016339_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
AVO69496.1|2016339_2016957_-	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
AVO69497.1|2017037_2017958_-	recombinase	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
AVO69498.1|2017959_2019903_-	ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
AVO69499.1|2019911_2020175_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AVO69500.1|2020183_2020444_-	DUF1108 domain-containing protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AVO69501.1|2020448_2020751_-	DUF2482 domain-containing protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AVO69502.1|2020845_2021007_-	DUF1270 domain-containing protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AVO69503.1|2021003_2021327_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AVO69504.1|2021381_2021762_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
AVO69505.1|2021748_2021946_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
AVO69506.1|2021961_2022714_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
AVO69507.1|2022764_2023094_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
AVO69508.1|2023082_2023298_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
AVO69509.1|2023313_2023577_-	XRE family transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
AVO69510.1|2023710_2024424_+	XRE family transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AVO69511.1|2024439_2025372_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AVO69512.1|2025377_2025719_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AVO69513.1|2025922_2026105_+	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
AVO69514.1|2026204_2027188_+	glycosyl transferase family A	NA	NA	NA	NA	NA
AVO69515.1|2027198_2027441_+	hypothetical protein	NA	NA	NA	NA	NA
AVO69516.1|2027503_2028541_+|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
AVO69517.1|2029659_2030676_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2029737:2029754	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AVO69518.1|2030697_2031753_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AVO69519.1|2032188_2033412_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AVO69520.1|2033855_2035163_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AVO69521.1|2035702_2037319_-	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AVO69522.1|2037394_2037679_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AVO69523.1|2037853_2038597_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
