assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	1	162543-162627	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	162569-162601|162569-162601|162569-162601	CP027486.1_1344508-1344540|CP027486.1_827381-827349|CP027486.1_1433140-1433108	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|CP027486.1_151688_152894_+,NA|68aa|down_0|CP027486.1_162688_162892_-	NA|402aa|up_9|CP027486.1_151688_152894_+	NA	NA|402aa|up_8|CP027486.1_152894_154100_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|CP027486.1_154110_154668_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|CP027486.1_154667_155555_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|CP027486.1_155608_156871_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|CP027486.1_156947_158093_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|CP027486.1_158157_158484_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|CP027486.1_158490_158874_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|CP027486.1_159300_160788_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|CP027486.1_161434_162394_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|CP027486.1_162688_162892_-	NA	NA|171aa|down_1|CP027486.1_163070_163583_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|CP027486.1_163924_164665_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|CP027486.1_164678_165650_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|CP027486.1_165646_166408_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|CP027486.1_166420_167452_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|CP027486.1_167668_168028_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|CP027486.1_168201_169227_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|CP027486.1_169612_170863_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|CP027486.1_171309_178485_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	2	400586-400687	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|CP027486.1_392145_392355_-,NA|128aa|up_7|CP027486.1_393179_393563_-,NA|33aa|up_1|CP027486.1_399810_399909_+,NA|86aa|up_0|CP027486.1_400119_400377_-,NA|221aa|down_0|CP027486.1_401706_402369_-,NA|179aa|down_6|CP027486.1_408460_408997_-,NA|80aa|down_9|CP027486.1_410804_411044_-	NA|70aa|up_9|CP027486.1_392145_392355_-	NA	NA|194aa|up_8|CP027486.1_392532_393114_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|CP027486.1_393179_393563_-	NA	NA|209aa|up_6|CP027486.1_393832_394459_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|CP027486.1_394902_396426_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP027486.1_396441_397011_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP027486.1_397502_398258_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP027486.1_398337_399726_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|CP027486.1_399810_399909_+	NA	NA|86aa|up_0|CP027486.1_400119_400377_-	NA	NA|221aa|down_0|CP027486.1_401706_402369_-	NA	NA|136aa|down_1|CP027486.1_402511_402919_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_2|CP027486.1_403431_404010_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_3|CP027486.1_404009_405278_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_4|CP027486.1_405315_406782_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_5|CP027486.1_406806_408348_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_6|CP027486.1_408460_408997_-	NA	NA|235aa|down_7|CP027486.1_409388_410093_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_8|CP027486.1_410491_410764_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|80aa|down_9|CP027486.1_410804_411044_-	NA
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	3	628773-628867	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCAGAATTTTATCACTAAAAAT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|169aa|up_3|CP027486.1_625376_625883_+,NA|239aa|up_2|CP027486.1_626044_626761_+,NA|68aa|down_2|CP027486.1_630728_630932_-	NA|554aa|up_9|CP027486.1_618878_620540_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_8|CP027486.1_620809_621445_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|up_7|CP027486.1_621756_622584_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|up_6|CP027486.1_622732_623683_+	pfam01032, FecCD, FecCD transport family	NA|240aa|up_5|CP027486.1_623737_624457_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|up_4|CP027486.1_624440_625241_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|up_3|CP027486.1_625376_625883_+	NA	NA|239aa|up_2|CP027486.1_626044_626761_+	NA	NA|263aa|up_1|CP027486.1_626929_627718_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|up_0|CP027486.1_627969_628344_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_0|CP027486.1_629363_630293_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_1|CP027486.1_630487_630712_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|68aa|down_2|CP027486.1_630728_630932_-	NA	NA|187aa|down_3|CP027486.1_631090_631651_+	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|801aa|down_4|CP027486.1_631669_634072_+	PRK12646, PRK12646, DUF4040 family protein	NA|142aa|down_5|CP027486.1_634058_634484_+	PRK12574, PRK12574, monovalent cation/H+ antiporter subunit B	NA|115aa|down_6|CP027486.1_634480_634825_+	PRK12660, PRK12660, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_7|CP027486.1_634814_636311_+	PRK12663, PRK12663, Na+/H+ antiporter subunit D	NA|161aa|down_8|CP027486.1_636311_636794_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|101aa|down_9|CP027486.1_636790_637093_+	PRK12657, PRK12657, putative monovalent cation/H+ antiporter subunit F; Reviewed
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	4	778761-778839	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	778785-778815|778785-778815	CP027486.1_285412-285382|CP027486.1_285357-285327	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|CP027486.1_769637_769742_+,NA|36aa|up_5|CP027486.1_771174_771282_+,NA|61aa|down_4|CP027486.1_784144_784327_-	NA|191aa|up_9|CP027486.1_766078_766651_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|CP027486.1_767064_769596_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|CP027486.1_769637_769742_+	NA	NA|370aa|up_6|CP027486.1_769910_771021_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|CP027486.1_771174_771282_+	NA	NA|280aa|up_4|CP027486.1_771429_772269_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP027486.1_772442_773093_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP027486.1_773089_773326_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP027486.1_773594_775580_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP027486.1_775587_778434_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP027486.1_779097_780030_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP027486.1_780035_780875_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|480aa|down_2|CP027486.1_781375_782815_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_3|CP027486.1_782881_783817_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|61aa|down_4|CP027486.1_784144_784327_-	NA	NA|304aa|down_5|CP027486.1_784585_785497_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP027486.1_785493_786489_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP027486.1_786599_787544_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP027486.1_788107_788695_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|CP027486.1_788937_789840_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	6	827686-827764	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_2|CP027486.1_826227_826341_+,NA|61aa|up_0|CP027486.1_827389_827572_+,NA	NA|165aa|up_9|CP027486.1_821853_822348_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_8|CP027486.1_822746_823169_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_7|CP027486.1_823316_824033_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_6|CP027486.1_824115_824655_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_5|CP027486.1_824805_825126_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_4|CP027486.1_825269_825626_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_3|CP027486.1_825783_826164_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_2|CP027486.1_826227_826341_+	NA	NA|293aa|up_1|CP027486.1_826342_827221_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|61aa|up_0|CP027486.1_827389_827572_+	NA	NA|129aa|down_0|CP027486.1_828016_828403_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP027486.1_828395_828692_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP027486.1_828941_829967_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP027486.1_829959_830655_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP027486.1_830672_831494_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|CP027486.1_831847_832042_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|CP027486.1_832275_833127_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|CP027486.1_833454_834216_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|CP027486.1_834313_835621_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|CP027486.1_835735_836977_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	7	1614575-1614659	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1614601-1614633|1614601-1614633	CP027486.1_1344540-1344508|CP027486.1_827349-827381	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|CP027486.1_1603785_1604469_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|CP027486.1_1604712_1604889_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|CP027486.1_1605181_1606528_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|CP027486.1_1606534_1607287_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|CP027486.1_1607288_1608227_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|CP027486.1_1608230_1609370_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|CP027486.1_1609505_1611338_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|CP027486.1_1611406_1612033_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|CP027486.1_1612064_1613042_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|CP027486.1_1613141_1614266_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|CP027486.1_1614831_1616655_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|CP027486.1_1617000_1617252_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|CP027486.1_1617296_1618271_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|CP027486.1_1618327_1620475_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|CP027486.1_1620533_1620995_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|CP027486.1_1621086_1621773_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|CP027486.1_1621812_1622529_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|CP027486.1_1622531_1622885_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|CP027486.1_1622885_1623470_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|CP027486.1_1623459_1624029_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	8	1649231-1649427	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AATTTCTCTATGTTGGGGCCCC	22	1	5	1649253-1649295|1649253-1649295|1649253-1649295|1649253-1649295|1649253-1649295	CP027486.1_361890-361848|CP027486.1_1036720-1036762|CP027486.1_1138140-1138098|CP027486.1_1344508-1344466|CP027486.1_1433140-1433182	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|CP027486.1_1653384_1653531_-,NA|43aa|down_8|CP027486.1_1656567_1656696_-	NA|208aa|up_9|CP027486.1_1637674_1638298_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|CP027486.1_1638297_1639566_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|CP027486.1_1639577_1640501_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|CP027486.1_1640503_1641142_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|CP027486.1_1641726_1642035_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|CP027486.1_1642049_1642478_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|CP027486.1_1642481_1642742_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|CP027486.1_1642804_1645435_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|CP027486.1_1645777_1648255_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|CP027486.1_1648256_1648925_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|CP027486.1_1649561_1650680_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|CP027486.1_1650680_1651823_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|CP027486.1_1652134_1653148_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|CP027486.1_1653384_1653531_-	NA	NA|61aa|down_4|CP027486.1_1653570_1653753_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|CP027486.1_1653852_1654275_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|CP027486.1_1654359_1655634_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|CP027486.1_1655794_1656568_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|CP027486.1_1656567_1656696_-	NA	NA|589aa|down_9|CP027486.1_1657028_1658795_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	9	2033633-2033714	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2033657-2033690|2033657-2033690|2033657-2033690|2033657-2033690|2033657-2033690	CP027486.1_778760-778793|CP027486.1_1133756-1133723|CP027486.1_1734890-1734857|CP027486.1_1348881-1348914|CP027486.1_2710026-2710059	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_7|CP027486.1_2025377_2025719_+,NA|61aa|up_6|CP027486.1_2025922_2026105_+,NA|81aa|up_4|CP027486.1_2027198_2027441_+,NA	NA|238aa|up_9|CP027486.1_2023710_2024424_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|CP027486.1_2024439_2025372_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|CP027486.1_2025377_2025719_+	NA	NA|61aa|up_6|CP027486.1_2025922_2026105_+	NA	NA|328aa|up_5|CP027486.1_2026204_2027188_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|CP027486.1_2027198_2027441_+	NA	NA|346aa|up_3|CP027486.1_2027503_2028541_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|CP027486.1_2029659_2030676_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|CP027486.1_2030697_2031753_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|CP027486.1_2032188_2033412_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|CP027486.1_2033855_2035163_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|CP027486.1_2035702_2037319_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|CP027486.1_2037394_2037679_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|CP027486.1_2037853_2038597_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|CP027486.1_2038621_2039881_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|CP027486.1_2040077_2040704_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|CP027486.1_2041064_2041850_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|CP027486.1_2042449_2042584_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|CP027486.1_2042819_2043383_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|CP027486.1_2043385_2043529_+	smart00794, AgrD, Staphylococcal AgrD protein
GCA_003010475.1_ASM301047v1	CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	10	2156440-2156520	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|CP027486.1_2151314_2151545_-,NA|364aa|up_0|CP027486.1_2155331_2156423_+,NA|35aa|down_0|CP027486.1_2156855_2156960_-,NA|61aa|down_1|CP027486.1_2157392_2157575_-,NA|53aa|down_2|CP027486.1_2157639_2157798_+,NA|31aa|down_3|CP027486.1_2158234_2158327_+	NA|237aa|up_9|CP027486.1_2146925_2147636_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP027486.1_2147756_2148200_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP027486.1_2148399_2148813_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP027486.1_2149269_2150643_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP027486.1_2151314_2151545_-	NA	NA|313aa|up_4|CP027486.1_2151575_2152514_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP027486.1_2152949_2153615_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP027486.1_2153766_2154087_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|CP027486.1_2154088_2155066_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP027486.1_2155331_2156423_+	NA	NA|35aa|down_0|CP027486.1_2156855_2156960_-	NA	NA|61aa|down_1|CP027486.1_2157392_2157575_-	NA	NA|53aa|down_2|CP027486.1_2157639_2157798_+	NA	NA|31aa|down_3|CP027486.1_2158234_2158327_+	NA	NA|286aa|down_4|CP027486.1_2158455_2159313_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP027486.1_2159380_2160163_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP027486.1_2160394_2162200_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|CP027486.1_2162880_2164419_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|CP027486.1_2164453_2166586_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|CP027486.1_2166597_2167032_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
