assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002999175.1_ASM299917v1	CP026660	Salmonella enterica subsp. enterica strain 15-SA01028 chromosome, complete genome	2	2949982-2951634	2,1,2,1	CRISPRCasFinder,PILER-CR,PILER-CR,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTNGCGCGGGGAACAC	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	26,25,25,23	26	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|81aa|down_9|CP026660.1_2961668_2961911_+	NA|254aa|up_9|CP026660.1_2941848_2942610_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP026660.1_2942590_2943640_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP026660.1_2943636_2944116_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP026660.1_2944115_2944826_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP026660.1_2944844_2945156_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|CP026660.1_2945346_2945703_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP026660.1_2945720_2946326_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|CP026660.1_2946312_2947752_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP026660.1_2947761_2948670_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|CP026660.1_2948920_2949967_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP026660.1_2951730_2952024_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP026660.1_2952023_2952944_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP026660.1_2952940_2953591_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP026660.1_2953572_2954319_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|CP026660.1_2954329_2955388_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|CP026660.1_2955401_2955962_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|CP026660.1_2955958_2957515_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|CP026660.1_2957526_2960190_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|CP026660.1_2960633_2961587_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|81aa|down_9|CP026660.1_2961668_2961911_+	NA
GCA_002999175.1_ASM299917v1	CP026660	Salmonella enterica subsp. enterica strain 15-SA01028 chromosome, complete genome	3	2967916-2969410	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,24,23	24	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|81aa|up_7|CP026660.1_2961668_2961911_+,NA|73aa|up_5|CP026660.1_2962460_2962679_+,NA|57aa|up_2|CP026660.1_2966471_2966642_-,NA	cas3|888aa|up_9|CP026660.1_2957526_2960190_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_8|CP026660.1_2960633_2961587_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|81aa|up_7|CP026660.1_2961668_2961911_+	NA	NA|245aa|up_6|CP026660.1_2961799_2962534_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|73aa|up_5|CP026660.1_2962460_2962679_+	NA	NA|571aa|up_4|CP026660.1_2962635_2964348_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_3|CP026660.1_2964347_2966147_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|57aa|up_2|CP026660.1_2966471_2966642_-	NA	NA|121aa|up_1|CP026660.1_2966570_2966933_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|CP026660.1_2967020_2967818_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|CP026660.1_2969706_2970378_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|CP026660.1_2970513_2971812_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|CP026660.1_2971894_2973532_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|CP026660.1_2973759_2974560_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|CP026660.1_2975330_2975627_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|CP026660.1_2975592_2975949_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|CP026660.1_2976032_2978267_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|CP026660.1_2978318_2979614_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|CP026660.1_2979671_2982428_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|CP026660.1_2982471_2983614_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
