The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	275451	284069	3015093	integrase,transposase	Shigella_phage(28.57%)	8	276531:276543	283178:283190
AVL21746.1|275451_275760_+	Transposase	NA	Q716C1	Shigella_phage	74.2	1.3e-30
AVL21747.1|275759_276629_+|transposase	putative transposase OrfB	transposase	Q716C2	Shigella_phage	65.6	2.8e-113
276531:276543	attL	AGCCAGCTCAGGC	NA	NA	NA	NA
AVL21748.1|276664_277906_-|integrase	Prophage CP4-57 integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
AVL21749.1|278291_280169_-	Sigma-70	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
AVL21750.1|280267_282031_-	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
AVL21751.1|282120_282564_-	hypothetical protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
AVL21752.1|282593_282809_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AVL21753.1|283049_284069_+	t(6)A37 threonylcarbamoyladenosine biosynthesis protein	NA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
283178:283190	attR	GCCTGAGCTGGCT	NA	NA	NA	NA
>prophage 2
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	290238	297456	3015093		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AVL21763.1|290238_290991_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
AVL21764.1|290983_291610_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
AVL21765.1|291609_292539_+	Murein hydrolase activator NlpD precursor	NA	D7RWE0	Brochothrix_phage	34.7	7.7e-05
AVL21766.1|292612_293620_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
AVL21767.1|293712_296298_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
AVL21768.1|296568_297456_-	Cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 3
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	529079	536272	3015093		Faustovirus(16.67%)	9	NA	NA
AVL21959.1|529079_530294_+	Cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
AVL21960.1|530330_530714_+	NifU-like protein	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
AVL21961.1|530774_531098_+	Iron-sulfur cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
AVL21962.1|531146_531662_+	Co-chaperone protein HscB	NA	NA	NA	NA	NA
AVL21963.1|531685_533536_+	Hsc66	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
AVL21964.1|533549_533888_+	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AVL21965.1|533936_534131_+	FeS assembly protein IscX	NA	NA	NA	NA	NA
AVL21966.1|534350_535640_+	Peptidase B	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
AVL21967.1|535843_536272_+	Nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 4
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	1275275	1307893	3015093		Vibrio_phage(47.37%)	26	NA	NA
AVL22604.1|1275275_1277384_-	Alpha-hemolysin translocation ATP-binding protein HlyB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
AVL22605.1|1277807_1278155_+	hypothetical protein	NA	NA	NA	NA	NA
AVL22606.1|1278246_1278642_+	Hemolysin-activating lysine-acyltransferase HlyC	NA	NA	NA	NA	NA
AVL22607.1|1278665_1292303_+	Toxin A	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
AVL22608.1|1292670_1292895_-	hypothetical protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
AVL22609.1|1292988_1293360_-	CTX phage RstB protein	NA	U5TMH5	Satellite_phage	100.0	3.3e-68
AVL22610.1|1293340_1294420_-	DNA replication initiation protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
AVL22611.1|1294545_1294884_+	transcriptional repressor DicA	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
AVL22612.1|1295496_1295871_-	Choleragenoid	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
AVL22613.1|1295867_1296644_-	Cholera enterotoxin, A chain	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
AVL22614.1|1296742_1297942_-	Zonular occludens toxin	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
AVL22615.1|1297938_1298223_-	hypothetical protein	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
AVL22616.1|1298228_1299416_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	100.0	1.4e-200
AVL22617.1|1299522_1299771_-	hypothetical protein	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
AVL22618.1|1299763_1299907_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22619.1|1299906_1300284_-	CTX phage RstB protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	3.1e-69
AVL22620.1|1300264_1301344_-	DNA replication initiation protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
AVL22621.1|1301469_1301808_+	transcriptional repressor DicA	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
AVL22622.1|1302297_1302882_-	Phage protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
AVL22623.1|1302874_1303042_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
AVL22624.1|1303119_1303812_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22625.1|1303941_1304226_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22626.1|1304230_1305799_-	replication initiation protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
AVL22627.1|1305975_1306527_+	Helix-turn-helix protein	NA	NA	NA	NA	NA
AVL22628.1|1307565_1307733_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22629.1|1307725_1307893_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
>prophage 5
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	1312282	1361892	3015093	transposase,capsid,tail,terminase,portal,head,protease	Vibrio_phage(46.67%)	48	NA	NA
AVL22635.1|1312282_1312909_+|transposase	putative transposase OrfB	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
AVL22636.1|1313817_1314129_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
AVL22637.1|1314287_1314611_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22638.1|1314624_1315074_-	Macrodomain Ter protein	NA	NA	NA	NA	NA
AVL22639.1|1315237_1316887_+|protease	Lon protease	protease	NA	NA	NA	NA
AVL22640.1|1316951_1317470_+	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA	NA
AVL22641.1|1317552_1317726_-	ribosome modulation factor	NA	NA	NA	NA	NA
AVL22642.1|1317893_1319588_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22643.1|1319593_1321513_-	ABC transporter ATP-binding protein uup	NA	A0A2K9L3Z8	Tupanvirus	29.7	7.6e-55
AVL22644.1|1321490_1321733_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22645.1|1321741_1323868_-	Ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
AVL22646.1|1323839_1323971_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22647.1|1324327_1324870_-	Z-ring-associated protein C	NA	NA	NA	NA	NA
AVL22648.1|1325024_1326035_-	Dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AVL22649.1|1326108_1330950_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AVL22650.1|1331408_1334033_-	Aminopeptidase N	NA	NA	NA	NA	NA
AVL22651.1|1334105_1334432_-	Transcriptional regulator HosA	NA	NA	NA	NA	NA
AVL22652.1|1334385_1334682_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22653.1|1335290_1335803_+	hypothetical protein	NA	NA	NA	NA	NA
AVL22654.1|1336119_1337385_+	hypothetical protein	NA	NA	NA	NA	NA
AVL22655.1|1337386_1337809_+	hypothetical protein	NA	NA	NA	NA	NA
AVL22656.1|1337872_1338238_-	Peptidase M15	NA	A0A2I7RAT1	Vibrio_phage	60.3	8.7e-37
AVL22657.1|1338221_1338779_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22658.1|1338778_1339786_-	Anaerobic sulfatase-maturating enzyme	NA	NA	NA	NA	NA
AVL22659.1|1339802_1340168_-	hypothetical protein	NA	C8ZKF3	Pseudomonas_phage	46.2	1.8e-05
AVL22660.1|1340168_1346111_-	hypothetical protein	NA	M4MHT9	Vibrio_phage	30.9	2.0e-98
AVL22661.1|1346114_1346510_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22662.1|1346512_1347052_-	hypothetical protein	NA	M4MD40	Vibrio_phage	35.1	4.5e-21
AVL22663.1|1347062_1347644_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22664.1|1347645_1349958_-	hypothetical protein	NA	A0A1Q1PW43	Pseudoalteromonas_phage	22.6	4.4e-09
AVL22665.1|1349974_1350265_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22666.1|1350309_1350645_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22667.1|1350697_1351168_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22668.1|1351181_1351550_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22669.1|1351552_1352164_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22670.1|1352150_1352498_-|head,tail	Bacteriophage head-tail adaptor	head,tail	NA	NA	NA	NA
AVL22671.1|1352509_1353061_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
AVL22672.1|1353075_1354266_-|capsid	phage major capsid protein, HK97 family	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
AVL22673.1|1354364_1355213_-|head,protease	phage prohead protease, HK97 family	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
AVL22674.1|1355175_1356501_-|portal	phage portal protein, HK97 family	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
AVL22675.1|1356510_1358271_-|terminase	Phage terminase-like protein, large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
AVL22676.1|1358279_1358462_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22677.1|1358461_1358677_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22678.1|1358704_1359385_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22679.1|1359381_1359987_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22680.1|1359967_1360474_-|terminase	putative phage terminase, small subunit, P27 family	terminase	K7PHI2	Enterobacteria_phage	27.1	1.1e-05
AVL22681.1|1360848_1361037_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22682.1|1361247_1361892_+	Antirestriction protein	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
>prophage 6
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	1366547	1374274	3015093		Diadromus_pulchellus_ascovirus(14.29%)	10	NA	NA
AVL22691.1|1366547_1367135_-	thymidylate kinase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
AVL22692.1|1367154_1367424_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22693.1|1367628_1368222_-	Deoxyadenosine/deoxycytidine kinase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
AVL22694.1|1368232_1368355_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22695.1|1368354_1368612_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22696.1|1368608_1369106_-	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	6.8e-08
AVL22697.1|1369075_1369936_-	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
AVL22698.1|1370129_1370561_-	Tellurite resistance protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
AVL22699.1|1370585_1372640_-	DNA polymerase I	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
AVL22700.1|1372639_1374274_-	DNA primase	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
>prophage 7
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	1711890	1718790	3015093	transposase	Vibrio_phage(71.43%)	13	NA	NA
AVL22979.1|1711890_1712067_-	putative transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.9	2.8e-09
AVL22980.1|1712210_1712687_+	DNA repair protein RadC	NA	NA	NA	NA	NA
AVL22981.1|1712683_1712821_+	hypothetical protein	NA	NA	NA	NA	NA
AVL22982.1|1712916_1713483_-	hypothetical protein	NA	M4MHE6	Vibrio_phage	31.4	7.5e-11
AVL22983.1|1713608_1714235_-|transposase	putative transposase OrfB	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
AVL22984.1|1714477_1714786_-	Transposase	NA	Q716C1	Shigella_phage	76.3	7.1e-32
AVL22985.1|1714828_1715869_-	tape measure domain protein	NA	A0A2I7S9D9	Vibrio_phage	72.5	2.6e-126
AVL22986.1|1716003_1716363_-	Mu-like prophage FluMu protein gp41	NA	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
AVL22987.1|1716411_1716783_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22988.1|1716843_1717422_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22989.1|1717440_1717761_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22990.1|1717747_1718122_-	hypothetical protein	NA	NA	NA	NA	NA
AVL22991.1|1718523_1718790_-	hypothetical protein	NA	M1Q554	Vibrio_phage	33.8	1.4e-07
>prophage 8
CP024867	Vibrio cholerae strain A1552 chromosome I, complete sequence	3015093	2198886	2205503	3015093		Staphylococcus_phage(66.67%)	7	NA	NA
AVL23429.1|2198886_2199357_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
AVL23430.1|2199621_2200731_-	Riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
AVL23431.1|2200771_2201425_-	Riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
AVL23432.1|2201429_2202533_-	Riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
AVL23433.1|2202558_2203008_-	Transcriptional repressor NrdR	NA	NA	NA	NA	NA
AVL23434.1|2203107_2204358_-	Gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
AVL23435.1|2204369_2205503_-	Glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
