The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	180232	191994	2557319	integrase	Staphylococcus_phage(66.67%)	16	174045:174062	195631:195648
174045:174062	attL	CTCTATTGTTATAACCAA	NA	NA	NA	NA
AVL76504.1|180232_180871_-	hypothetical protein	NA	A0A2H4JFF8	uncultured_Caudovirales_phage	60.8	8.6e-64
AVL76505.1|180830_181040_-	hypothetical protein	NA	NA	NA	NA	NA
AVL76506.1|181169_181511_-	pathogenicity island protein	NA	NA	NA	NA	NA
AVL76507.1|181798_183253_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	70.5	3.9e-213
AVL76508.1|183268_184168_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	53.9	1.2e-82
AVL76509.1|184229_184535_-	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	51.9	6.6e-14
AVL76510.1|184536_184770_-	hypothetical protein	NA	NA	NA	NA	NA
AVL76511.1|184771_185059_-	hypothetical protein	NA	NA	NA	NA	NA
AVL76512.1|185246_185507_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
AVL76513.1|185523_186147_-	phage repressor protein	NA	A0A1W6JPC3	Staphylococcus_phage	53.4	2.5e-55
AVL76514.1|186143_186353_-	XRE family transcriptional regulator	NA	A0A1W6JPB7	Staphylococcus_phage	43.3	2.9e-05
AVL76515.1|186585_187389_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AVL76516.1|187398_188448_+|integrase	site-specific integrase	integrase	U3PJ31	Staphylococcus_phage	39.9	6.6e-69
AVL76517.1|188823_189669_-	YitT family protein	NA	NA	NA	NA	NA
AVL76518.1|190011_190956_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.3	5.4e-54
AVL76519.1|191007_191994_-	hypothetical protein	NA	A1IMD5	Streptococcus_phage	41.5	3.8e-50
195631:195648	attR	CTCTATTGTTATAACCAA	NA	NA	NA	NA
>prophage 2
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	227548	247941	2557319		uncultured_Caudovirales_phage(35.71%)	16	NA	NA
AVL76550.1|227548_228349_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	29.4	1.0e-13
AVL76551.1|228345_229305_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	54.0	1.9e-06
AVL76552.1|229294_230263_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.3	2.2e-135
AVL76553.1|230728_231697_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	93.8	1.8e-174
AVL76554.1|231935_234041_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.6	0.0e+00
AVL76555.1|234003_234402_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	73.5	2.3e-51
AVL76556.1|235113_236001_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVL76557.1|236014_236515_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	1.2e-52
AVL76558.1|236697_238212_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.4	5.9e-71
AVL76559.1|238472_239981_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.1	8.0e-68
AVL76560.1|240199_241141_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.7	9.6e-11
AVL76561.1|241379_241928_-	5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	2.9e-28
AVL76562.1|242158_243214_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.0	5.1e-21
AVL76563.1|243401_244916_-	glycine/betaine ABC transporter permease	NA	NA	NA	NA	NA
AVL76564.1|244912_245875_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.1	1.6e-24
AVL76565.1|246162_247941_-	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	36.7	2.0e-78
>prophage 3
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	829934	836960	2557319		Staphylococcus_phage(50.0%)	7	NA	NA
AVL77076.1|829934_830249_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	61.5	7.3e-32
AVL77077.1|830251_831541_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	80.0	1.5e-184
AVL77078.1|831558_831954_+	protein ArsC 2	NA	A0A2H4PQT9	Staphylococcus_phage	82.0	2.6e-58
AVL77079.1|832593_832962_+	transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	86.9	1.3e-56
AVL77080.1|832954_835372_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	63.0	2.8e-248
AVL77081.1|835476_836091_+	cadmium resistance protein CadD	NA	NA	NA	NA	NA
AVL77082.1|836519_836960_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	33.6	4.6e-16
>prophage 4
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	1780558	1807997	2557319		Staphylococcus_phage(85.0%)	27	NA	NA
AVL77923.1|1780558_1781953_+	protoporphyrinogen oxidase	NA	A0A0M3SGX2	Mollivirus	33.3	1.4e-05
AVL77924.1|1782095_1782653_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AVL77925.1|1784575_1785964_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	59.3	3.2e-164
AVL77926.1|1785976_1786981_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	54.0	1.3e-93
AVL77927.1|1786977_1787214_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.3	1.3e-30
AVL77928.1|1787275_1787785_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.5	4.0e-48
AVL78652.1|1787765_1788545_+	dipeptidyl aminopeptidase	NA	A0A2H4PQM6	Staphylococcus_phage	70.6	6.5e-98
AVL77929.1|1788571_1790161_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	80.3	6.3e-257
AVL77930.1|1790541_1791738_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.6	2.2e-193
AVL77931.1|1791834_1792743_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	72.7	7.4e-85
AVL77932.1|1793193_1794030_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	63.9	2.7e-102
AVL77933.1|1794108_1794465_-	CrcB family protein	NA	NA	NA	NA	NA
AVL77934.1|1794461_1794827_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.9	5.3e-34
AVL77935.1|1794887_1795193_-	hypothetical protein	NA	NA	NA	NA	NA
AVL77936.1|1795478_1796192_+	transaldolase	NA	R9TM64	Synechococcus_phage	36.5	8.5e-20
AVL77937.1|1796691_1797141_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	3.1e-20
AVL77938.1|1797145_1797568_-	hypothetical protein	NA	NA	NA	NA	NA
AVL77939.1|1797578_1798058_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AVL77940.1|1798279_1798504_+	hypothetical protein	NA	NA	NA	NA	NA
AVL77941.1|1798668_1799523_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	43.3	8.0e-41
AVL77942.1|1799918_1800848_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVL77943.1|1801009_1802485_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	65.5	8.5e-14
AVL77944.1|1803171_1804215_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	4.8e-128
AVL77945.1|1804221_1804854_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	63.8	5.5e-71
AVL77946.1|1804864_1806043_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	71.5	3.9e-163
AVL77947.1|1806054_1806513_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.7	1.9e-57
AVL77948.1|1806995_1807997_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	68.1	1.4e-124
>prophage 5
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	1811009	1818673	2557319	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
AVL77952.1|1811009_1811570_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	63.2	3.4e-64
AVL77953.1|1811566_1812520_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	3.9e-68
AVL77954.1|1812629_1813799_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	76.4	2.6e-167
AVL77955.1|1814248_1816663_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.8	0.0e+00
AVL77956.1|1816684_1816996_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	73.8	9.7e-37
AVL77957.1|1817413_1818673_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	72.6	1.0e-39
>prophage 6
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	1941864	1951040	2557319	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AVL78062.1|1941864_1942866_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	7.5e-06
AVL78063.1|1942868_1943894_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVL78064.1|1943918_1945058_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	1.2e-84
AVL78065.1|1945075_1945336_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	4.3e-06
AVL78066.1|1945661_1947938_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.5	3.8e-29
AVL78067.1|1948229_1950506_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.6	3.2e-68
AVL78068.1|1950521_1951040_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.9	6.6e-30
>prophage 7
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	2075108	2087672	2557319		uncultured_Mediterranean_phage(25.0%)	14	NA	NA
AVL78189.1|2075108_2076023_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	31.7	1.5e-05
AVL78190.1|2076212_2076755_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AVL78191.1|2076859_2077306_+	transcriptional repressor	NA	NA	NA	NA	NA
AVL78192.1|2077342_2078230_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.9	4.3e-37
AVL78193.1|2078321_2078828_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
AVL78194.1|2078919_2079654_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.2	2.7e-08
AVL78195.1|2079637_2080186_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	3.6e-10
AVL78196.1|2080178_2080916_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AVL78197.1|2081051_2081777_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	41.3	1.2e-45
AVL78198.1|2081760_2083533_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	25.6	1.5e-20
AVL78199.1|2083950_2084496_+	ECF transporter S component	NA	NA	NA	NA	NA
AVL78200.1|2084982_2085231_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	2.2e-15
AVL78201.1|2085340_2086306_+	hypothetical protein	NA	NA	NA	NA	NA
AVL78202.1|2086292_2087672_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	33.7	7.6e-57
>prophage 8
CP027422	Staphylococcus cohnii strain FDAARGOS_334 chromosome, complete genome	2557319	2512830	2521305	2557319		Synechococcus_phage(33.33%)	9	NA	NA
AVL78582.1|2512830_2513397_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	4.7e-29
AVL78583.1|2513399_2514428_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	2.5e-65
AVL78584.1|2514420_2515908_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	30.9	2.3e-43
AVL78585.1|2515886_2518076_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	38.3	4.2e-134
AVL78586.1|2518068_2518740_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AVL78587.1|2518739_2519000_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVL78588.1|2519001_2519703_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	41.2	5.2e-46
AVL78589.1|2519702_2520836_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVL78590.1|2520822_2521305_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	7.5e-20
>prophage 1
CP027419	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed2, complete sequence	32058	0	1583	32058		Cyanophage(100.0%)	1	NA	NA
AVL76237.1|122_1583_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	35.9	2.0e-71
>prophage 2
CP027419	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed2, complete sequence	32058	5616	7282	32058	transposase	Lactobacillus_virus(50.0%)	2	NA	NA
AVL76241.1|5616_6759_-|transposase	transposase	transposase	C1KFJ5	Lactobacillus_virus	51.4	4.3e-98
AVL76242.1|6859_7282_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	62.9	1.7e-47
>prophage 3
CP027419	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed2, complete sequence	32058	10489	19031	32058	protease	Streptococcus_phage(25.0%)	7	NA	NA
AVL76246.1|10489_11461_-	replication protein	NA	A0A286QNA4	Streptococcus_phage	47.6	7.5e-19
AVL76247.1|11877_12612_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
AVL76248.1|12712_13645_-	NADP-dependent oxidoreductase	NA	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	25.9	4.9e-07
AVL76249.1|13906_14548_+	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
AVL76250.1|14703_15222_+|protease	protease	protease	NA	NA	NA	NA
AVL76263.1|15725_17741_+	daunorubicin resistance protein DrrC	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	35.8	1.0e-102
AVL76251.1|17882_19031_-	glutathione-dependent formaldehyde dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.4	2.8e-12
>prophage 4
CP027419	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed2, complete sequence	32058	22902	27377	32058	transposase	Mycobacterium_phage(25.0%)	4	NA	NA
AVL76254.1|22902_23514_-	transposon DNA-invertase	NA	G8I4U3	Mycobacterium_phage	29.7	6.6e-13
AVL76255.1|23651_24467_-	ATP-binding protein	NA	A0A0M3LP72	Mannheimia_phage	29.8	3.0e-05
AVL76256.1|25872_26466_-	HTH domain-containing protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.5e-41
AVL76257.1|26702_27377_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	89.7	1.1e-117
