The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027407	Roseobacter denitrificans strain FDAARGOS_309 chromosome, complete genome	4133061	898660	925544	4133061	head,tRNA,tail,protease,capsid	Paracoccus_phage(30.0%)	27	NA	NA
AVL51967.1|898660_899716_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVL54777.1|899726_903056_-	hypothetical protein	NA	NA	NA	NA	NA
AVL51968.1|903212_903674_+	peroxiredoxin	NA	NA	NA	NA	NA
AVL51969.1|903670_904480_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AVL51970.1|904647_905982_+	peptidase M23	NA	G3MBP9	Bacillus_virus	42.9	3.3e-17
AVL51971.1|905971_906466_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA	NA
AVL51972.1|906906_907467_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.6	2.4e-38
AVL51973.1|907459_907966_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.1	4.5e-39
AVL51974.1|908095_909283_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AVL51975.1|909510_909810_+	septum formation initiator precursor	NA	NA	NA	NA	NA
AVL51976.1|909945_910956_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
AVL51977.1|910959_912339_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA	NA
AVL51978.1|912350_913646_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
AVL54778.1|913780_914593_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
AVL51979.1|914704_918649_-	host specificity protein	NA	A0A0B5A7K5	Paracoccus_phage	38.8	1.0e-223
AVL51980.1|918648_919095_-	peptidase	NA	A0A1V0DYB6	Dinoroseobacter_phage	48.2	8.2e-29
AVL51981.1|919091_919979_-	DUF2163 domain-containing protein	NA	A0A0K0PVK1	Roseobacter_phage	40.1	4.7e-60
AVL51982.1|919978_920611_-	TIGR02217 family protein	NA	A0A0B5A2K3	Paracoccus_phage	50.5	2.9e-56
AVL51983.1|920628_921291_-|tail	phage tail protein	tail	C0LP53	Escherichia_virus	31.1	6.5e-14
AVL54779.1|921303_921462_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
AVL51984.1|921485_921803_-	gene transfer agent family protein	NA	NA	NA	NA	NA
AVL51985.1|921804_922218_-|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
AVL51986.1|922246_922657_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
AVL51987.1|922653_922992_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AVL51988.1|922988_923582_-	hypothetical protein	NA	NA	NA	NA	NA
AVL51989.1|923740_924919_-|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	37.9	9.0e-67
AVL51990.1|924986_925544_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	54.2	1.6e-34
>prophage 1
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	0	2160	106464	transposase	Acidithiobacillus_phage(50.0%)	2	NA	NA
AVL51264.1|692_1454_-	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	48.4	1.9e-57
AVL51181.1|1455_2160_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	45.9	1.7e-52
>prophage 2
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	13175	17258	106464		Bacillus_phage(50.0%)	3	NA	NA
AVL51186.1|13175_14084_+	tyrosine recombinase	NA	U5Q0B8	Bacillus_phage	23.9	7.8e-10
AVL51187.1|14352_16677_+	hypothetical protein	NA	NA	NA	NA	NA
AVL51188.1|16967_17258_-	HNH endonuclease	NA	A0A2P0VMU9	Tetraselmis_virus	47.2	6.5e-11
>prophage 3
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	20329	21475	106464		Bacillus_phage(100.0%)	1	NA	NA
AVL51190.1|20329_21475_-	exonuclease SbcCD subunit D	NA	A0A076G8Y3	Bacillus_phage	24.0	3.5e-07
>prophage 4
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	39475	40789	106464		Rhizobium_phage(100.0%)	1	NA	NA
AVL51209.1|39475_40789_-	replication protein C	NA	L7TKN6	Rhizobium_phage	36.7	3.8e-13
>prophage 5
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	45809	46448	106464		Geobacillus_virus(100.0%)	1	NA	NA
AVL51216.1|45809_46448_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	45.9	3.8e-27
>prophage 6
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	57192	59929	106464	transposase	Escherichia_phage(50.0%)	2	NA	NA
AVL51266.1|57192_58227_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	74.5	9.4e-153
AVL51227.1|58417_59929_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.9e-21
>prophage 7
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	69179	72449	106464		Aurantimonas_phage(50.0%)	4	NA	NA
AVL51234.1|69179_69893_+	virulence protein	NA	A0A0A8IL09	Aurantimonas_phage	24.0	2.7e-05
AVL51235.1|69879_70527_+	hypothetical protein	NA	NA	NA	NA	NA
AVL51236.1|70965_71466_-	hypothetical protein	NA	NA	NA	NA	NA
AVL51237.1|71552_72449_-	DUF1738 domain-containing protein	NA	A0A1B1IRD0	uncultured_Mediterranean_phage	38.9	3.1e-35
>prophage 8
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	89288	90491	106464		Salmonella_phage(100.0%)	1	NA	NA
AVL51251.1|89288_90491_-	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	25.5	2.1e-18
>prophage 9
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	95519	97415	106464		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
AVL51258.1|95519_97415_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	33.3	1.5e-58
>prophage 10
CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	106464	100844	101426	106464		Aeromonas_phage(100.0%)	1	NA	NA
AVL51271.1|100844_101426_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	37.6	8.2e-21
