The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	0	18424	4355637		Mycobacterium_phage(14.29%)	14	NA	NA
AVK88350.1|1715_2924_+	DNA polymerase III subunit beta	NA	G8I4E4	Mycobacterium_phage	38.9	1.9e-64
AVK88351.1|2943_4101_+	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
AVK88352.1|4097_4661_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AVK91891.1|4902_6930_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	42.6	8.1e-132
AVK88353.1|6964_9481_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	A0A172JHV7	Bacillus_phage	29.0	3.4e-87
AVK88354.1|9576_10491_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88355.1|10887_11079_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88356.1|11536_11974_-	cell wall synthesis protein CwsA	NA	NA	NA	NA	NA
AVK88357.1|12130_12679_+	peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	45.2	1.5e-24
AVK88358.1|13375_13657_-	cell division protein CrgA	NA	NA	NA	NA	NA
AVK88359.1|13750_14539_+	DUF881 domain-containing protein	NA	NA	NA	NA	NA
AVK88360.1|14575_15274_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	47.4	2.0e-42
AVK88361.1|15251_17132_-	serine/threonine protein kinase	NA	L7RGQ5	Acanthamoeba_polyphaga_moumouvirus	35.1	8.0e-17
AVK88362.1|17128_18424_-	serine/threonine protein kinase	NA	A0A2P1EMR8	Moumouvirus	28.8	6.7e-15
>prophage 2
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	43207	46117	4355637	tRNA	Staphylococcus_phage(100.0%)	1	NA	NA
AVK88384.1|43207_46117_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	44.6	7.3e-211
>prophage 3
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	49666	50770	4355637		Stenotrophomonas_phage(100.0%)	1	NA	NA
AVK88389.1|49666_50770_-	inositol-3-phosphate synthase	NA	A0A0H4IPK5	Stenotrophomonas_phage	43.4	1.4e-74
>prophage 4
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	58240	68017	4355637		uncultured_Caudovirales_phage(25.0%)	11	NA	NA
AVK88397.1|58240_58735_+	single-stranded DNA-binding protein	NA	A0A2H4JEL4	uncultured_Caudovirales_phage	73.8	1.4e-58
AVK88398.1|58776_59031_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AVK88399.1|59063_59522_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AVK91895.1|59550_60072_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88400.1|60050_62675_+	intein-containing replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	47.5	4.9e-20
AVK88401.1|62854_63547_+	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
AVK88402.1|63563_64622_+	hypothetical protein	NA	B0FIJ9	Escherichia_phage	38.5	2.1e-22
AVK88403.1|64666_65005_-	hypothetical protein	NA	NA	NA	NA	NA
AVK88404.1|65054_65267_-	hypothetical protein	NA	NA	NA	NA	NA
AVK88405.1|65206_66349_+	cellulase CelA	NA	NA	NA	NA	NA
AVK88406.1|66577_68017_+	FAD-binding oxidoreductase	NA	S4VRT3	Pandoravirus	32.6	1.2e-20
>prophage 5
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	77310	82360	4355637		Aeromonas_phage(50.0%)	4	NA	NA
AVK88415.1|77310_78588_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	48.2	3.2e-86
AVK88416.1|79177_79885_+	maturase	NA	NA	NA	NA	NA
AVK88417.1|80315_81365_+	ABC transporter permease	NA	NA	NA	NA	NA
AVK88418.1|81367_82360_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.7	7.7e-35
>prophage 6
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	100274	102560	4355637		uncultured_virus(100.0%)	1	NA	NA
AVK88439.1|100274_102560_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.5	1.9e-84
>prophage 7
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	107848	121866	4355637		Staphylococcus_phage(33.33%)	5	NA	NA
AVK88445.1|107848_109471_+	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	23.2	3.2e-14
AVK91897.1|109475_109712_+	acyl carrier protein	NA	NA	NA	NA	NA
AVK88446.1|109693_117232_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	23.9	2.2e-81
AVK88447.1|117406_119392_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88448.1|119607_121866_-	cation-transporting P-type ATPase B	NA	A0A218MNH6	uncultured_virus	33.8	3.5e-83
>prophage 8
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	125357	130235	4355637		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVK88452.1|125357_130235_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	30.1	5.4e-41
>prophage 9
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	133644	143572	4355637		Synechococcus_phage(40.0%)	9	NA	NA
AVK88455.1|133644_135702_+	acyltransferase	NA	A0A166XZF2	Gordonia_phage	34.6	2.3e-41
AVK88456.1|135983_136940_+	GDP-mannose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	31.0	6.0e-37
AVK88457.1|137013_137604_+	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	30.1	6.4e-13
AVK88458.1|137635_138208_+	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AVK88459.1|138207_139275_+	D-alpha-D-heptose-7-phosphate kinase	NA	A0A222YW25	Synechococcus_phage	37.4	2.5e-55
AVK88460.1|139651_139840_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91899.1|139962_140718_-	transpeptidase	NA	NA	NA	NA	NA
AVK91901.1|140895_141840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AVK91900.1|141823_143572_-	oxalyl-CoA decarboxylase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.7	1.2e-27
>prophage 10
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	156425	157448	4355637		Macacine_betaherpesvirus(100.0%)	1	NA	NA
AVK88471.1|156425_157448_-	diacylglycerol acyltransferase	NA	A0A2I6B0H1	Macacine_betaherpesvirus	70.3	1.9e-129
>prophage 11
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	160716	164539	4355637		Human_cytomegalovirus(50.0%)	3	NA	NA
AVK88475.1|160716_161322_+	N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	32.5	2.7e-19
AVK88476.1|162491_163097_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVK88477.1|163213_164539_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	26.2	3.5e-19
>prophage 12
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	177390	179157	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK88490.1|177390_179157_-	PE family protein	NA	A0A222ZKN7	Mycobacterium_phage	39.0	1.0e-21
>prophage 13
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	187281	188688	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK88499.1|187281_188688_-	PE family protein	NA	A0A222ZKN7	Mycobacterium_phage	34.1	3.4e-20
>prophage 14
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	191832	196508	4355637		Prochlorococcus_phage(50.0%)	6	NA	NA
AVK88502.1|191832_192984_-	alcohol dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	29.6	7.8e-31
AVK91905.1|192965_193421_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AVK88503.1|193350_193536_-	hypothetical protein	NA	NA	NA	NA	NA
AVK88504.1|193474_193960_+	cyclase	NA	NA	NA	NA	NA
AVK88505.1|193973_194666_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVK88506.1|194843_196508_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	28.5	3.2e-33
>prophage 15
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	218555	219218	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK88526.1|218555_219218_+	O-methyltransferase	NA	S5YRC3	Mycobacterium_phage	51.2	1.4e-45
>prophage 16
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	226729	230314	4355637		Bacillus_phage(100.0%)	1	NA	NA
AVK88532.1|226729_230314_+	multidrug transporter	NA	W8CYL7	Bacillus_phage	30.0	1.9e-43
>prophage 17
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	234370	236362	4355637	protease	Klosneuvirus(100.0%)	1	NA	NA
AVK88535.1|234370_236362_-|protease	zinc metalloprotease	protease	A0A1V0SHG2	Klosneuvirus	38.5	3.2e-80
>prophage 18
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	253523	254495	4355637		Serratia_phage(100.0%)	1	NA	NA
AVK88547.1|253523_254495_-	nicotinamide-nucleotide adenylyltransferase	NA	A0A1S6UB31	Serratia_phage	28.9	7.8e-24
>prophage 19
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	259806	263907	4355637		Mycobacterium_phage(100.0%)	4	NA	NA
AVK88551.1|259806_260715_-	alpha/beta hydrolase	NA	A0A068F2G2	Mycobacterium_phage	31.4	6.8e-06
AVK88552.1|260807_262136_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88553.1|262137_262686_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88554.1|262695_263907_+	alpha/beta hydrolase	NA	A0A088FQA2	Mycobacterium_phage	42.4	8.7e-49
>prophage 20
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	296845	298786	4355637		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVK88581.1|296845_298786_-	fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA	M1HTN0	Paramecium_bursaria_Chlorella_virus	28.4	9.1e-24
>prophage 21
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	320745	324231	4355637		Mycobacterium_phage(50.0%)	3	NA	NA
AVK88599.1|320745_321255_-	prevent-host-death family protein	NA	A0A1C9M039	Mycobacterium_phage	74.4	5.9e-23
AVK88600.1|321319_322513_-	DNA polymerase domain-containing protein	NA	NA	NA	NA	NA
AVK88601.1|322548_324231_+	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	28.5	1.6e-24
>prophage 22
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	342854	350352	4355637		Mycobacterium_phage(100.0%)	3	NA	NA
AVK88615.1|342854_344750_+	type VII secretion system ESX-3 AAA family ATPase EccA3	NA	V5UQM2	Mycobacterium_phage	40.6	3.1e-101
AVK88616.1|344746_346363_+	type VII secretion system ESX-3 subunit EccB3	NA	V5UN45	Mycobacterium_phage	35.0	5.6e-59
AVK88617.1|346359_350352_+	type VII secretion system ESX-3 FtsK/SpoIIIE family ATPase EccC3	NA	V5UPA0	Mycobacterium_phage	26.3	8.0e-91
>prophage 23
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	355222	356608	4355637	protease	Mycobacterium_phage(100.0%)	1	NA	NA
AVK88624.1|355222_356608_+|protease	type VII secretion system ESX-3 serine protease mycosin MycP3	protease	V5UPA7	Mycobacterium_phage	39.8	6.6e-69
>prophage 24
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	385925	394798	4355637		Acanthocystis_turfacea_Chlorella_virus(20.0%)	10	NA	NA
AVK91920.1|385925_386696_-	glycerophosphodiester phosphodiesterase	NA	M1HUL1	Acanthocystis_turfacea_Chlorella_virus	27.1	2.2e-13
AVK88644.1|387057_387852_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AVK88645.1|387900_388569_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
AVK88646.1|388640_389303_+	hypothetical protein	NA	A0A2D1GPL9	Mycobacterium_phage	42.5	2.4e-24
AVK88647.1|389334_389907_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	74.7	1.4e-78
AVK88648.1|390012_391344_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	35.8	2.7e-67
AVK88649.1|391332_392004_-	PIG-L family deacetylase	NA	NA	NA	NA	NA
AVK88650.1|392104_392785_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVK88651.1|392791_393481_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVK88652.1|393448_394798_-	cytochrome P450	NA	A0A2I2L481	Orpheovirus	21.6	1.5e-12
>prophage 25
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	399410	400277	4355637		Enterobacteria_phage(100.0%)	1	NA	NA
AVK88658.1|399410_400277_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	56.6	4.3e-90
>prophage 26
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	420587	424392	4355637		Chrysochromulina_ericina_virus(50.0%)	3	NA	NA
AVK88671.1|420587_422465_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	49.3	2.3e-141
AVK88672.1|422461_423169_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AVK88673.1|423204_424392_+	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	27.7	2.1e-15
>prophage 27
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	436208	437507	4355637		Pandoravirus(100.0%)	1	NA	NA
AVK88677.1|436208_437507_-	adenylosuccinate synthetase	NA	A0A291AUF9	Pandoravirus	34.6	6.4e-66
>prophage 28
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	452537	453017	4355637		Acinetobacter_phage(100.0%)	1	NA	NA
AVK88694.1|452537_453017_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	32.1	3.5e-17
>prophage 29
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	458578	462740	4355637		Prochlorococcus_phage(50.0%)	3	NA	NA
AVK88700.1|458578_459118_-	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	44.9	4.3e-16
AVK88701.1|459198_460053_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91927.1|460193_462740_-	chaperone protein ClpB	NA	K4FB40	Cronobacter_phage	35.7	1.1e-120
>prophage 30
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	478066	479296	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK88715.1|478066_479296_-	D-alanyl-D-alanine carboxypeptidase	NA	A0A1D8EXR7	Mycobacterium_phage	25.0	2.4e-17
>prophage 31
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	486468	487851	4355637		Paenibacillus_phage(100.0%)	1	NA	NA
AVK88720.1|486468_487851_+	polyketide synthase	NA	D0R7J2	Paenibacillus_phage	33.8	1.7e-32
>prophage 32
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	495800	498053	4355637		Moloney_murine_sarcoma_virus(100.0%)	1	NA	NA
AVK91932.1|495800_498053_-	serine/threonine protein kinase	NA	Q85650	Moloney_murine_sarcoma_virus	26.1	3.0e-10
>prophage 33
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	511440	516060	4355637		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
AVK88738.1|511440_516060_-	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	25.5	6.7e-41
>prophage 34
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	519471	519780	4355637		Gordonia_phage(100.0%)	1	NA	NA
AVK88743.1|519471_519780_+	DUF3263 domain-containing protein	NA	A0A1B3AZ99	Gordonia_phage	43.5	1.6e-07
>prophage 35
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	523085	525272	4355637		Scale_drop_disease_virus(100.0%)	1	NA	NA
AVK88747.1|523085_525272_-	ATPase	NA	A0A0K1L651	Scale_drop_disease_virus	42.6	1.4e-36
>prophage 36
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	529346	530969	4355637		uncultured_virus(100.0%)	1	NA	NA
AVK88751.1|529346_530969_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	56.1	9.3e-155
>prophage 37
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	553352	554747	4355637		Erysipelothrix_phage(100.0%)	1	NA	NA
AVK88770.1|553352_554747_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.6	1.1e-47
>prophage 38
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	560626	562450	4355637		Tupanvirus(100.0%)	2	NA	NA
AVK88777.1|560626_561487_+	SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	33.1	1.1e-29
AVK88778.1|561586_562450_-	cyclopropane mycolic acid synthase	NA	A0A2K9L4K8	Tupanvirus	31.9	7.1e-29
>prophage 39
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	579973	582170	4355637		Bacillus_phage(100.0%)	3	NA	NA
AVK88797.1|579973_581206_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	32.1	1.3e-28
AVK91947.1|581121_581328_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91946.1|581486_582170_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	40.4	2.0e-42
>prophage 40
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	590760	595457	4355637		Streptococcus_phage(33.33%)	6	NA	NA
AVK88806.1|590760_591648_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	32.0	1.8e-22
AVK88807.1|591788_592025_+	DNA-binding protein	NA	NA	NA	NA	NA
AVK88808.1|592152_592254_+	AURKAIP1/COX24 domain-containing protein	NA	NA	NA	NA	NA
AVK88809.1|592331_593462_+	UDP-glucose 4-epimerase	NA	M1IBX1	Acanthocystis_turfacea_Chlorella_virus	27.3	2.4e-08
AVK88810.1|593468_594545_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88811.1|594548_595457_-	cyclopropane mycolic acid synthase	NA	A0A2K9L4K8	Tupanvirus	30.8	4.9e-28
>prophage 41
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	621583	622801	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK88834.1|621583_622801_+	MinD/ParA family protein	NA	V5UPR8	Mycobacterium_phage	32.6	5.7e-32
>prophage 42
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	628018	629059	4355637		Bodo_saltans_virus(100.0%)	1	NA	NA
AVK88843.1|628018_629059_+	UDP-glucose 4-epimerase	NA	A0A2H4UUK0	Bodo_saltans_virus	26.5	1.2e-19
>prophage 43
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	641865	643581	4355637		Staphylococcus_phage(100.0%)	1	NA	NA
AVK88857.1|641865_643581_-	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	25.5	5.4e-28
>prophage 44
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	660219	661638	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK88872.1|660219_661638_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	24.3	3.1e-13
>prophage 45
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	666618	669162	4355637		Bacillus_virus(50.0%)	2	NA	NA
AVK88878.1|666618_668010_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	40.5	2.1e-67
AVK88879.1|668019_669162_-	hypothetical protein	NA	S4VS02	Pandoravirus	50.8	2.1e-92
>prophage 46
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	699809	702786	4355637	transposase	Bacillus_phage(50.0%)	4	NA	NA
AVK88903.1|699809_700571_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.0	2.2e-34
AVK88904.1|700627_700939_+	hypothetical protein	NA	NA	NA	NA	NA
AVK88905.1|701010_701961_+	peptidase M23	NA	NA	NA	NA	NA
AVK88906.1|702201_702786_+|transposase	IS607 family transposase IS1536	transposase	F9VHY9	Thermus_phage	32.4	7.7e-19
>prophage 47
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	720777	722505	4355637		Virus_Rctr197k(100.0%)	1	NA	NA
AVK88930.1|720777_722505_-	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	28.5	8.4e-21
>prophage 48
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	737060	743380	4355637		Tupanvirus(60.0%)	6	NA	NA
AVK91967.1|737060_737966_-	hydroxymycolate synthase MmaA4	NA	A0A2I2L5L3	Orpheovirus	30.0	1.0e-25
AVK88943.1|738030_738912_-	methoxy mycolic acid synthase MmaA3	NA	A0A2K9L4K8	Tupanvirus	30.7	3.3e-29
AVK88944.1|739059_739923_-	cyclopropane mycolic acid synthase	NA	A0A2K9L4K8	Tupanvirus	28.1	1.3e-22
AVK88945.1|740089_740950_-	mycolic acid methyltransferase MmaA1	NA	A0A2K9L4K8	Tupanvirus	29.1	7.4e-26
AVK88946.1|740996_741902_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVK88947.1|741913_743380_-	AarF/ABC1/UbiB kinase family protein	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	31.8	1.4e-32
>prophage 49
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	752812	753892	4355637		Planktothrix_phage(100.0%)	1	NA	NA
AVK88953.1|752812_753892_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.1	1.2e-22
>prophage 50
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	761102	771847	4355637		Emiliania_huxleyi_virus(33.33%)	5	NA	NA
AVK91971.1|761102_764621_+	DNA-directed RNA polymerase subunit beta	NA	G8DH04	Emiliania_huxleyi_virus	21.8	1.4e-33
AVK88965.1|764665_768616_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.8	1.9e-52
AVK88966.1|768612_768933_-	hypothetical protein	NA	NA	NA	NA	NA
AVK88967.1|768979_770893_-	hydrolase	NA	NA	NA	NA	NA
AVK88968.1|771088_771847_+	endonuclease	NA	A0A1V0SID1	Klosneuvirus	28.2	7.9e-16
>prophage 51
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	783781	787308	4355637		Streptococcus_phage(50.0%)	2	NA	NA
AVK88980.1|783781_785887_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	25.6	1.0e-60
AVK88981.1|786117_787308_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	26.6	3.1e-30
>prophage 52
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	798229	799669	4355637		Catovirus(100.0%)	1	NA	NA
AVK88994.1|798229_799669_+	mycofactocin system GMC family oxidoreductase MftG	NA	A0A1V0S9J5	Catovirus	25.6	5.6e-10
>prophage 53
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	810095	810995	4355637		Microcystis_virus(100.0%)	1	NA	NA
AVK89012.1|810095_810995_+	formylglycine-generating enzyme family protein	NA	A0A7H6	Microcystis_virus	29.0	5.0e-17
>prophage 54
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	821845	822826	4355637		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
AVK89028.1|821845_822826_-	D-3-phosphoglycerate dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.0	9.6e-22
>prophage 55
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	827471	828017	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK89033.1|827471_828017_+	adenylate kinase	NA	A0A2K9L833	Tupanvirus	35.1	1.3e-15
>prophage 56
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	853324	859753	4355637		Bacillus_phage(50.0%)	8	NA	NA
AVK89056.1|853324_854068_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.9	4.9e-34
AVK89057.1|854112_855570_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	30.2	5.4e-21
AVK89058.1|855541_855943_-	HIT family protein	NA	NA	NA	NA	NA
AVK89059.1|855982_856402_-	steroid delta-isomerase	NA	NA	NA	NA	NA
AVK89060.1|856414_857542_-	alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.2	1.8e-27
AVK89061.1|857640_858186_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AVK89062.1|858188_858395_-	ferredoxin	NA	NA	NA	NA	NA
AVK89063.1|858397_859753_-	lanosterol 14-alpha demethylase	NA	M1PWN0	Moumouvirus	23.1	2.4e-07
>prophage 57
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	875058	875952	4355637		Mollivirus(100.0%)	1	NA	NA
AVK89079.1|875058_875952_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	35.4	3.2e-40
>prophage 58
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	896176	898441	4355637		Microbacterium_phage(100.0%)	1	NA	NA
AVK91981.1|896176_898441_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	64.3	8.1e-274
>prophage 59
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	902467	905176	4355637		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
AVK89102.1|902467_904051_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.6	2.6e-45
AVK89103.1|904081_905176_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.3	2.3e-56
>prophage 60
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	911328	913859	4355637		Bacillus_phage(50.0%)	3	NA	NA
AVK91984.1|911328_912096_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	31.5	1.8e-15
AVK89110.1|912092_913040_+	mycothiol synthase	NA	NA	NA	NA	NA
AVK89111.1|913082_913859_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.9	1.2e-11
>prophage 61
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	949870	951553	4355637		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AVK89140.1|949870_951553_-	alpha-keto-acid decarboxylase	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	21.2	2.7e-08
>prophage 62
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	958956	960585	4355637		Acidianus_filamentous_virus(100.0%)	1	NA	NA
AVK89148.1|958956_960585_-	helicase	NA	B2CRJ8	Acidianus_filamentous_virus	23.1	1.7e-15
>prophage 63
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	964691	968565	4355637		Macacine_betaherpesvirus(50.0%)	5	NA	NA
AVK89153.1|964691_965795_-	resuscitation-promoting factor RpfA	NA	A0A2I6B0Z0	Macacine_betaherpesvirus	89.7	6.6e-96
AVK89154.1|966242_966521_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AVK89155.1|966524_967607_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AVK89156.1|967603_967993_-	YccF domain-containing protein	NA	NA	NA	NA	NA
AVK89157.1|968157_968565_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	44.4	1.1e-08
>prophage 64
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	992864	993722	4355637		Pandoravirus(100.0%)	1	NA	NA
AVK91997.1|992864_993722_-	adenylate/guanylate cyclase domain-containing protein	NA	S4VR00	Pandoravirus	32.6	2.1e-09
>prophage 65
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1011998	1014392	4355637		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVK89192.1|1011998_1014392_+	magnesium-transporting ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	25.5	7.0e-26
>prophage 66
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1022354	1029605	4355637	transposase	Vibrio_phage(25.0%)	7	NA	NA
AVK89201.1|1022354_1024136_+	glycine/betaine ABC transporter permease	NA	A0A2I7QNT1	Vibrio_phage	27.1	3.8e-24
AVK89202.1|1024132_1024390_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89203.1|1024478_1024955_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
AVK89204.1|1024951_1025452_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVK89205.1|1025764_1027084_-|transposase	IS256-like element IS1554 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	26.6	2.9e-29
AVK89206.1|1027371_1027953_+|transposase	IS607 family transposase IS1535	transposase	F9VHY9	Thermus_phage	33.5	1.4e-23
AVK89207.1|1027952_1029605_+|transposase	transposase	transposase	M4I0H6	Staphylococcus_phage	23.9	1.2e-08
>prophage 67
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1041779	1048685	4355637		Mycoplasma_phage(25.0%)	6	NA	NA
AVK92001.1|1041779_1042364_+	phosphate ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	35.1	6.8e-07
AVK89218.1|1042384_1043509_+	phosphate ABC transporter substrate-binding protein PstS	NA	E3SKK5	Synechococcus_phage	27.0	2.1e-20
AVK89219.1|1043568_1044585_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AVK89220.1|1044586_1045492_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AVK92002.1|1045468_1046290_-	non-homologous end joining protein Ku	NA	A0A249XRB2	Mycobacterium_phage	51.5	6.1e-70
AVK89221.1|1046405_1048685_+	ATP-dependent DNA ligase	NA	A0A291AUP8	Sinorhizobium_phage	37.8	5.7e-41
>prophage 68
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1057569	1064321	4355637		Bacillus_phage(50.0%)	7	NA	NA
AVK89231.1|1057569_1057800_-	mycolyltransferase	NA	A0A2I6B0H1	Macacine_betaherpesvirus	60.4	1.0e-06
AVK92003.1|1057716_1057911_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89232.1|1057915_1058233_-	chorismate mutase	NA	NA	NA	NA	NA
AVK89233.1|1058529_1060845_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	37.1	2.4e-119
AVK89234.1|1060925_1061924_-	M23 family peptidase	NA	S5M424	Bacillus_phage	41.5	8.3e-13
AVK89235.1|1062233_1063397_+	succinyl-CoA ligase subunit beta	NA	NA	NA	NA	NA
AVK89236.1|1063418_1064321_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L5E9	Tupanvirus	30.3	8.9e-14
>prophage 69
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1067830	1070046	4355637		Synechococcus_phage(50.0%)	2	NA	NA
AVK89241.1|1067830_1068478_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.5	9.5e-18
AVK89242.1|1068474_1070046_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	41.0	1.5e-53
>prophage 70
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1079012	1081325	4355637		Streptococcus_phage(100.0%)	1	NA	NA
AVK92005.1|1079012_1081325_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.2	2.7e-91
>prophage 71
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1097104	1097791	4355637		Bacillus_phage(100.0%)	1	NA	NA
AVK92010.1|1097104_1097791_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.8	6.3e-36
>prophage 72
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1102085	1102832	4355637		Planktothrix_phage(100.0%)	1	NA	NA
AVK89267.1|1102085_1102832_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.2	1.3e-34
>prophage 73
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1109554	1110475	4355637		Bacillus_phage(100.0%)	1	NA	NA
AVK89273.1|1109554_1110475_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	39.5	4.2e-43
>prophage 74
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1116813	1117431	4355637		Pacmanvirus(100.0%)	1	NA	NA
AVK89283.1|1116813_1117431_-	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	A0A1X6WG33	Pacmanvirus	29.4	3.4e-09
>prophage 75
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1122504	1177653	4355637	protease,transposase,tRNA,integrase	Klosneuvirus(16.67%)	56	1133550:1133566	1182602:1182618
AVK89287.1|1122504_1123941_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	41.3	6.5e-35
AVK89288.1|1123996_1125700_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89289.1|1125726_1127286_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.2	2.8e-100
AVK92014.1|1127371_1128166_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA	NA
AVK89290.1|1128373_1129462_+	resuscitation-promoting factor	NA	A0A1I9SA30	Rhodococcus_phage	64.9	2.4e-21
AVK89291.1|1129434_1130388_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AVK92015.1|1130473_1131394_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
AVK89292.1|1131390_1131705_+	hypothetical protein	NA	NA	NA	NA	NA
AVK92016.1|1131664_1131964_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89293.1|1131908_1133543_+	polyketide synthase	NA	NA	NA	NA	NA
1133550:1133566	attL	CGAGCAGACGCAAAATC	NA	NA	NA	NA
AVK89294.1|1133616_1134192_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AVK89295.1|1134204_1134852_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
AVK89296.1|1135779_1136760_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	32.7	1.8e-44
AVK89297.1|1136851_1138339_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	NA	NA	NA	NA
AVK92017.1|1138593_1139187_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVK89298.1|1139245_1142950_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AVK92018.1|1142949_1143927_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AVK89299.1|1144014_1144746_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89300.1|1144842_1146132_+	enolase	NA	W6LP63	Streptococcus_phage	56.6	1.6e-133
AVK89301.1|1146136_1146823_+	septum formation initiator family protein	NA	NA	NA	NA	NA
AVK92019.1|1146839_1147307_+	DUF501 domain-containing protein	NA	NA	NA	NA	NA
AVK89302.1|1147297_1148257_+	exopolyphosphatase	NA	NA	NA	NA	NA
AVK89303.1|1148496_1148709_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89304.1|1148705_1149386_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	30.6	4.2e-24
AVK89305.1|1149382_1151965_-	sensor histidine kinase KdpD	NA	NA	NA	NA	NA
AVK89306.1|1152055_1152202_+	potassium transporter Trk	NA	NA	NA	NA	NA
AVK92020.1|1152198_1152291_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AVK89307.1|1152290_1154006_+	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AVK89308.1|1154002_1156132_+	potassium-transporting ATPase subunit B	NA	M1HRW9	Paramecium_bursaria_Chlorella_virus	26.2	3.8e-23
AVK89309.1|1156131_1156701_+	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AVK89310.1|1156704_1158234_-	sensor histidine kinase	NA	NA	NA	NA	NA
AVK89311.1|1158241_1159015_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.3	2.3e-34
AVK89312.1|1160822_1161107_-	ESAT-6-like protein EsxI	NA	NA	NA	NA	NA
AVK89313.1|1161133_1161430_-	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
AVK89314.1|1161575_1162751_-	PPE family protein	NA	NA	NA	NA	NA
AVK89315.1|1162827_1163655_-	PE family protein	NA	NA	NA	NA	NA
AVK89316.1|1164215_1164464_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89317.1|1164442_1164682_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89318.1|1164587_1164806_-	hypothetical protein	NA	NA	NA	NA	NA
AVK92021.1|1164850_1165333_-|transposase	IS5 family transposase	transposase	A0A1V0SLQ8	Klosneuvirus	28.7	8.1e-06
AVK89319.1|1165370_1165769_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AVK92022.1|1166060_1167086_-|protease	serine protease	protease	NA	NA	NA	NA
AVK89320.1|1167332_1167956_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89321.1|1167952_1168834_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89322.1|1168915_1169704_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89323.1|1169703_1170951_+|transposase	IS256 family transposase IS1081	transposase	A0A220NQR7	Corynebacterium_phage	45.1	3.1e-81
AVK89324.1|1171318_1172434_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89325.1|1172390_1172594_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89326.1|1172666_1173113_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVK92023.1|1173160_1174066_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AVK89327.1|1174224_1174980_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AVK92024.1|1175274_1175901_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89328.1|1175967_1176150_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89329.1|1176845_1177184_+|integrase	integrase	integrase	NA	NA	NA	NA
AVK89330.1|1177207_1177522_+|integrase	integrase	integrase	Q854H9	Mycobacterium_phage	53.6	1.0e-09
AVK89331.1|1177458_1177653_+|integrase	integrase	integrase	A0A2H4JG32	uncultured_Caudovirales_phage	54.5	3.8e-07
1182602:1182618	attR	CGAGCAGACGCAAAATC	NA	NA	NA	NA
>prophage 76
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1180963	1182595	4355637		Staphylococcus_phage(100.0%)	1	NA	NA
AVK89333.1|1180963_1182595_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	23.6	8.8e-28
>prophage 77
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1202899	1206416	4355637		Streptococcus_phage(50.0%)	3	NA	NA
AVK89346.1|1202899_1204294_+	cystathionine beta-synthase	NA	A0A1X9I5F1	Streptococcus_phage	42.4	2.6e-57
AVK89347.1|1204495_1205218_+	RDD family protein	NA	NA	NA	NA	NA
AVK89348.1|1205249_1206416_+	cystathionine gamma-synthase	NA	A0A0B5JD48	Pandoravirus	34.9	2.5e-24
>prophage 78
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1211777	1212566	4355637		Flavobacterium_phage(100.0%)	1	NA	NA
AVK89354.1|1211777_1212566_+	short-chain Z-isoprenyl diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	35.0	1.2e-14
>prophage 79
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1221762	1225487	4355637		Aeromonas_phage(50.0%)	3	NA	NA
AVK89364.1|1221762_1223043_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	48.4	1.1e-86
AVK89365.1|1223147_1223975_+	acyl-ACP desaturase	NA	NA	NA	NA	NA
AVK89366.1|1224185_1225487_+	PhoH family protein	NA	A0A2L0UZX2	Agrobacterium_phage	31.2	1.0e-23
>prophage 80
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1234031	1236648	4355637		Molluscum_contagiosum_virus(50.0%)	3	NA	NA
AVK89375.1|1234031_1235144_-	3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase	NA	Q76TT0	Molluscum_contagiosum_virus	33.0	1.9e-29
AVK89376.1|1235153_1235411_-	exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA	NA
AVK89377.1|1235400_1236648_-	exodeoxyribonuclease 7 large subunit	NA	A0A1B3AYB4	Gordonia_phage	51.3	7.5e-72
>prophage 81
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1241374	1247339	4355637		Mycobacterium_phage(33.33%)	7	NA	NA
AVK89384.1|1241374_1242073_+	hypothetical protein	NA	A0A0K2FNG4	Mycobacterium_phage	32.1	7.3e-08
AVK89385.1|1242190_1242376_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89386.1|1242302_1242578_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89387.1|1242820_1243144_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AVK89388.1|1243158_1244019_-	guanylate cyclase	NA	NA	NA	NA	NA
AVK89389.1|1244894_1246295_+	glucose-6-phosphate 1-dehydrogenase	NA	M4SIY3	Cyanophage	35.6	1.2e-62
AVK89390.1|1246316_1247339_+	6-phosphogluconate dehydrogenase (decarboxylating)	NA	R9TLE2	Synechococcus_phage	53.4	7.0e-92
>prophage 82
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1251119	1252592	4355637		Stenotrophomonas_phage(100.0%)	1	NA	NA
AVK89395.1|1251119_1252592_-	pyruvate, phosphate dikinase	NA	A0A2D2W2B1	Stenotrophomonas_phage	38.0	1.7e-70
>prophage 83
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1272343	1273096	4355637		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AVK89409.1|1272343_1273096_+	oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.2	3.7e-05
>prophage 84
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1279526	1280806	4355637	transposase	Klosneuvirus(50.0%)	2	NA	NA
AVK92041.1|1279526_1280009_+|transposase	IS5 family transposase	transposase	A0A1V0SLQ8	Klosneuvirus	28.7	8.1e-06
AVK89414.1|1280092_1280806_-	NAD-dependent deacylase	NA	A0A220NU33	Escherichia_phage	33.5	3.4e-16
>prophage 85
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1292253	1293930	4355637		Escherichia_phage(100.0%)	1	NA	NA
AVK89426.1|1292253_1293930_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	47.8	1.5e-19
>prophage 86
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1304120	1306691	4355637		Mamastrovirus(100.0%)	1	NA	NA
AVK92046.1|1304120_1306691_+	FO synthase	NA	A9ZMK9	Mamastrovirus	33.8	3.4e-18
>prophage 87
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1314853	1321111	4355637		Paenibacillus_phage(100.0%)	1	NA	NA
AVK89443.1|1314853_1321111_+	polyketide synthase	NA	D0R7J2	Paenibacillus_phage	32.6	7.5e-27
>prophage 88
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1325660	1326740	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK89446.1|1325660_1326740_-	PE-PPE domain-containing protein	NA	A0A222ZS78	Mycobacterium_phage	36.1	2.4e-18
>prophage 89
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1336924	1338346	4355637		Hepacivirus(100.0%)	1	NA	NA
AVK89453.1|1336924_1338346_+	acyl-CoA synthetase	NA	Q75ZG1	Hepacivirus	31.0	5.8e-28
>prophage 90
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1342485	1343733	4355637	transposase	Corynebacterium_phage(100.0%)	1	NA	NA
AVK89459.1|1342485_1343733_-|transposase	IS256 family transposase IS1081	transposase	A0A220NQR7	Corynebacterium_phage	45.1	3.1e-81
>prophage 91
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1349846	1350410	4355637		Enterococcus_phage(100.0%)	1	NA	NA
AVK89466.1|1349846_1350410_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	32.1	1.7e-10
>prophage 92
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1362925	1368591	4355637	protease	Staphylococcus_phage(33.33%)	7	NA	NA
AVK89479.1|1362925_1363861_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.5	3.3e-19
AVK89480.1|1363850_1364489_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVK92049.1|1364630_1365305_-	methyltransferase	NA	NA	NA	NA	NA
AVK89481.1|1365540_1366314_+	ECF RNA polymerase sigma factor SigE	NA	A0A0F6TH34	Sinorhizobium_phage	30.1	9.6e-09
AVK89482.1|1366283_1366472_+	hypothetical protein	NA	NA	NA	NA	NA
AVK92050.1|1366471_1366936_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
AVK89483.1|1367004_1368591_+|protease	serine protease	protease	W5SAB9	Pithovirus	26.9	1.9e-11
>prophage 93
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1381813	1382995	4355637		Planktothrix_phage(100.0%)	1	NA	NA
AVK89498.1|1381813_1382995_+	trehalose import ATP-binding protein SugC	NA	G9BWD6	Planktothrix_phage	36.2	6.6e-25
>prophage 94
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1401099	1403939	4355637		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	2	NA	NA
AVK89514.1|1401099_1402791_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.7	1.3e-55
AVK89515.1|1402787_1403939_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	26.8	3.8e-09
>prophage 95
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1412081	1422634	4355637		Acanthocystis_turfacea_Chlorella_virus(60.0%)	5	NA	NA
AVK89524.1|1412081_1413872_-	serine/threonine protein kinase	NA	M1HTZ5	Acanthocystis_turfacea_Chlorella_virus	34.1	6.5e-16
AVK89525.1|1414115_1416512_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	36.2	8.6e-32
AVK89526.1|1416522_1418253_-	serine/threonine protein kinase	NA	M1HTZ5	Acanthocystis_turfacea_Chlorella_virus	34.1	6.2e-16
AVK89527.1|1418496_1420893_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	36.2	8.6e-32
AVK89528.1|1420903_1422634_-	serine/threonine protein kinase	NA	M1HTZ5	Acanthocystis_turfacea_Chlorella_virus	34.1	6.2e-16
>prophage 96
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1427203	1430844	4355637		Bacillus_phage(100.0%)	2	NA	NA
AVK89533.1|1427203_1429099_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.1	4.4e-55
AVK89534.1|1429095_1430844_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	6.7e-42
>prophage 97
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1436855	1442065	4355637	holin	Klosneuvirus(50.0%)	3	NA	NA
AVK89539.1|1436855_1438442_+|holin	glucose-methanol-choline oxidoreductase	holin	A0A1V0SI18	Klosneuvirus	28.0	1.5e-48
AVK89540.1|1438458_1440234_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89541.1|1440226_1442065_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.1	2.5e-15
>prophage 98
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1445700	1447545	4355637		Hokovirus(100.0%)	1	NA	NA
AVK89546.1|1445700_1447545_+	adenylyl-sulfate kinase	NA	A0A1V0SGC3	Hokovirus	25.6	1.1e-34
>prophage 99
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1464254	1464908	4355637		Pandoravirus(100.0%)	1	NA	NA
AVK89565.1|1464254_1464908_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	35.5	1.3e-19
>prophage 100
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1483817	1490901	4355637		uncultured_Mediterranean_phage(66.67%)	5	NA	NA
AVK89578.1|1483817_1484315_-	cysteine methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	52.9	5.4e-21
AVK89579.1|1484311_1485802_-	bifunctional transcriptional activator/DNA repair protein AlkA	NA	NA	NA	NA	NA
AVK89580.1|1485882_1487508_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	29.1	2.5e-14
AVK89581.1|1487577_1489185_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
AVK89582.1|1489197_1490901_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	29.9	2.2e-13
>prophage 101
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1503878	1514871	4355637	protease	Bacillus_phage(20.0%)	13	NA	NA
AVK89592.1|1503878_1505873_-	ATP-dependent helicase DinG	NA	A0A127AW80	Bacillus_phage	28.3	5.3e-51
AVK89593.1|1505896_1507243_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	36.3	9.4e-44
AVK89594.1|1507344_1507650_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	NA	NA	NA	NA
AVK89595.1|1507609_1508266_+	DUF2017 domain-containing protein	NA	NA	NA	NA	NA
AVK89596.1|1508282_1509317_+	hydrolase	NA	NA	NA	NA	NA
AVK89597.1|1509324_1509765_+	[CysO]-cysteine peptidase	NA	NA	NA	NA	NA
AVK89598.1|1509786_1510068_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AVK89599.1|1510077_1511049_+	O-phosphoserine sulfhydrylase	NA	A0A1X9I5K7	Streptococcus_phage	37.5	5.9e-48
AVK89600.1|1511039_1511762_+|protease	rhomboid family intramembrane serine protease	protease	L7RCY0	Acanthamoeba_polyphaga_moumouvirus	31.9	7.1e-06
AVK89601.1|1511758_1512574_+	glutamate racemase	NA	NA	NA	NA	NA
AVK89602.1|1512600_1513422_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89603.1|1513438_1514218_+	ribonuclease PH	NA	NA	NA	NA	NA
AVK89604.1|1514256_1514871_+	non-canonical purine NTP pyrophosphatase	NA	Q66YC8	Euphorbia_ringspot_virus	30.5	7.6e-09
>prophage 102
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1519730	1524918	4355637		Bacillus_phage(66.67%)	3	NA	NA
AVK89611.1|1519730_1522310_+	iron import ATP-binding/permease IrtA	NA	W8CYL7	Bacillus_phage	26.7	4.8e-28
AVK89612.1|1522306_1524046_+	iron import ATP-binding/permease IrtB	NA	W8CYL7	Bacillus_phage	25.3	2.6e-22
AVK89613.1|1524174_1524918_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	24.2	3.6e-05
>prophage 103
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1545073	1546124	4355637		Mycobacterium_phage(100.0%)	2	NA	NA
AVK89631.1|1545073_1545895_+	GTP pyrophosphokinase family protein	NA	A0A142K822	Mycobacterium_phage	51.1	1.7e-48
AVK89632.1|1545863_1546124_+	hypothetical protein	NA	A0A142K823	Mycobacterium_phage	60.6	8.7e-15
>prophage 104
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1561297	1562428	4355637		Halovirus(100.0%)	1	NA	NA
AVK89646.1|1561297_1562428_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.5	1.2e-36
>prophage 105
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1569727	1576296	4355637		Abalone_herpesvirus(25.0%)	6	NA	NA
AVK89653.1|1569727_1570354_+	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	34.2	1.1e-15
AVK89654.1|1570419_1570752_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AVK89655.1|1570767_1572024_+	bifunctional phosphopantothenoylcysteine decarboxylase CoaC/phosphopantothenate--cysteine ligase CoaB	NA	Q9HH70	Methanothermobacter_phage	32.3	2.7e-37
AVK92058.1|1572151_1573363_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	55.4	5.7e-117
AVK89656.1|1573435_1574914_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AVK89657.1|1574910_1576296_-	cytochrome P450	NA	A0A2I2L481	Orpheovirus	25.6	2.2e-24
>prophage 106
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1580788	1581751	4355637		Powai_lake_megavirus(100.0%)	1	NA	NA
AVK89662.1|1580788_1581751_-	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	28.3	4.1e-25
>prophage 107
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1590147	1597107	4355637		Staphylococcus_phage(100.0%)	8	NA	NA
AVK89668.1|1590147_1591167_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	35.7	9.0e-39
AVK92062.1|1591163_1592720_-	MFS-type drug efflux transporter P55	NA	NA	NA	NA	NA
AVK92063.1|1592725_1593436_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89669.1|1593520_1594126_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	41.1	4.1e-31
AVK89670.1|1594333_1594855_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89671.1|1594844_1595246_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89672.1|1595350_1596628_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	45.4	5.7e-91
AVK89673.1|1596624_1597107_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	41.4	3.6e-14
>prophage 108
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1600932	1602863	4355637		Thermobifida_phage(50.0%)	2	NA	NA
AVK89678.1|1600932_1601838_+	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.8	3.3e-08
AVK89679.1|1601834_1602863_+	hypothetical protein	NA	A1IMD5	Streptococcus_phage	35.8	7.9e-35
>prophage 109
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1606012	1612926	4355637		Mycobacterium_phage(66.67%)	5	NA	NA
AVK89682.1|1606012_1607275_-	alpha/beta hydrolase	NA	A0A068F2G2	Mycobacterium_phage	37.4	1.5e-35
AVK89683.1|1607274_1608882_-	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	27.8	5.6e-27
AVK89684.1|1608885_1609713_-	glycerol acyltransferase	NA	NA	NA	NA	NA
AVK89685.1|1609831_1611100_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
AVK89686.1|1611339_1612926_+	PE family protein	NA	A0A222ZKN7	Mycobacterium_phage	40.8	2.9e-28
>prophage 110
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1624765	1627066	4355637		Escherichia_phage(100.0%)	1	NA	NA
AVK89700.1|1624765_1627066_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	A0A077SK27	Escherichia_phage	31.6	2.4e-71
>prophage 111
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1630389	1631934	4355637		Synechococcus_phage(100.0%)	1	NA	NA
AVK89707.1|1630389_1631934_-	glucose-6-phosphate 1-dehydrogenase	NA	E3SJC5	Synechococcus_phage	35.8	1.5e-74
>prophage 112
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1648445	1658436	4355637		Staphylococcus_phage(20.0%)	9	NA	NA
AVK89716.1|1648445_1649387_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.0e-17
AVK89717.1|1649367_1649625_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89718.1|1649542_1651318_-	alpha-(1-6)-mannopyranosyltransferase	NA	NA	NA	NA	NA
AVK92067.1|1651365_1652172_+	transcriptional regulator	NA	NA	NA	NA	NA
AVK89719.1|1652168_1654709_+	Fe-S cluster assembly protein SufB	NA	A0A2K9VC86	Lactobacillus_phage	22.4	1.8e-11
AVK89720.1|1654705_1655899_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
AVK89721.1|1655895_1656696_+	Fe-S cluster assembly ATPase SufC	NA	W8CYL7	Bacillus_phage	25.9	2.1e-06
AVK89722.1|1656697_1657951_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.3	6.8e-105
AVK89723.1|1657947_1658436_+	SUF system NifU family Fe-S cluster assembly protein	NA	A0A0K1LSF9	Mycobacterium_phage	45.5	4.3e-23
>prophage 113
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1662142	1667464	4355637		Streptococcus_phage(33.33%)	5	NA	NA
AVK89727.1|1662142_1664116_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.2	3.8e-86
AVK89728.1|1664159_1664534_+	thioredoxin	NA	NA	NA	NA	NA
AVK89729.1|1664549_1664921_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	37.6	8.4e-11
AVK89730.1|1664942_1665800_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AVK89731.1|1665835_1667464_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	25.3	1.4e-33
>prophage 114
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1673598	1674324	4355637		Streptomyces_phage(100.0%)	1	NA	NA
AVK89737.1|1673598_1674324_+	peptidoglycan endopeptidase RipB	NA	A0A1J0GW44	Streptomyces_phage	36.4	6.7e-12
>prophage 115
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1678619	1679363	4355637		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AVK89742.1|1678619_1679363_+	beta-ketoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.7	1.6e-08
>prophage 116
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1696028	1700323	4355637		Salmonella_phage(50.0%)	4	NA	NA
AVK89757.1|1696028_1697057_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	32.2	2.6e-33
AVK89758.1|1697068_1697890_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89759.1|1698102_1699002_+	hypothetical protein	NA	NA	NA	NA	NA
AVK89760.1|1699174_1700323_-	dTDP-4-amino-4,6-dideoxygalactose transaminase	NA	A0A2K9L0G1	Tupanvirus	33.3	2.3e-22
>prophage 117
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1704748	1706500	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK89766.1|1704748_1706500_+	acyl-CoA synthetase	NA	A0A2K9KZV5	Tupanvirus	22.8	1.1e-07
>prophage 118
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1711172	1713861	4355637		Shahe_endorna-like_virus(100.0%)	2	NA	NA
AVK89768.1|1711172_1712417_+	glycosyl transferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	37.5	2.5e-06
AVK89769.1|1712580_1713861_-	glycosyl transferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	40.3	7.4e-06
>prophage 119
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1728319	1731445	4355637	tRNA	Orpheovirus(100.0%)	1	NA	NA
AVK89779.1|1728319_1731445_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	36.2	1.0e-162
>prophage 120
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1739494	1747234	4355637		Saccharomonospora_phage(50.0%)	3	NA	NA
AVK89789.1|1739494_1743049_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	60.2	0.0e+00
AVK92075.1|1743097_1745134_-	PPE family protein	NA	NA	NA	NA	NA
AVK89790.1|1745290_1747234_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	24.6	3.0e-43
>prophage 121
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1765598	1770664	4355637		Pseudomonas_phage(33.33%)	4	NA	NA
AVK89806.1|1765598_1767788_-	acyltransferase	NA	B5WZU0	Pseudomonas_phage	32.4	2.3e-23
AVK89807.1|1767886_1768579_-	hypothetical protein	NA	A0A1J0GW44	Streptomyces_phage	36.5	4.3e-08
AVK89808.1|1768818_1769103_-	hypothetical protein	NA	NA	NA	NA	NA
AVK92077.1|1769350_1770664_+	adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA	NA	A0A1V0SKB7	Klosneuvirus	27.6	2.2e-13
>prophage 122
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1774602	1782465	4355637	protease,head,capsid,terminase	Mycobacterium_phage(50.0%)	11	NA	NA
AVK89815.1|1774602_1776024_-|capsid	phage major capsid protein	capsid	E0YQ07	Mycobacterium_phage	37.6	6.4e-59
AVK89816.1|1776031_1776544_-|head,protease	HK97 family phage prohead protease	head,protease	NA	NA	NA	NA
AVK89817.1|1776717_1777188_-|terminase	phage terminase small subunit P27 family	terminase	A0A1B3B1V2	Gordonia_phage	54.2	2.5e-36
AVK89818.1|1777268_1777583_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89819.1|1777579_1777852_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89820.1|1777865_1778261_-	hypothetical protein	NA	NA	NA	NA	NA
AVK92078.1|1778456_1779872_-	hypothetical protein	NA	A0A1B2AQ05	Phage_Wrath	31.6	9.2e-66
AVK89821.1|1779871_1780270_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89822.1|1780266_1780488_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89823.1|1780543_1781059_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89824.1|1781055_1782465_-	recombinase family protein	NA	A0A2D1GQ20	Mycobacterium_phage	42.2	1.3e-96
>prophage 123
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1794855	1795998	4355637		Faustovirus(100.0%)	1	NA	NA
AVK89833.1|1794855_1795998_+	histidinol-phosphate transaminase	NA	A0A142C026	Faustovirus	29.6	1.7e-17
>prophage 124
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1804199	1805018	4355637		Acinetobacter_phage(100.0%)	1	NA	NA
AVK89843.1|1804199_1805018_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	36.1	8.0e-30
>prophage 125
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1822139	1827339	4355637		Feldmannia_irregularis_virus(50.0%)	4	NA	NA
AVK89857.1|1822139_1822757_+	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	33.0	3.9e-05
AVK89858.1|1822824_1824033_-	lipid-transfer protein	NA	NA	NA	NA	NA
AVK89859.1|1824029_1824521_-	benzoylsuccinyl-CoA thiolase	NA	NA	NA	NA	NA
AVK89860.1|1824624_1827339_+	DNA polymerase I	NA	A0A060AFQ3	Listeria_phage	30.6	2.5e-43
>prophage 126
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1836857	1846837	4355637	tRNA	Mycobacterium_phage(25.0%)	6	NA	NA
AVK89866.1|1836857_1837652_-	MBL fold metallo-hydrolase	NA	A0A0C5AMT2	Mycobacterium_phage	67.4	6.2e-11
AVK92088.1|1837700_1840619_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	52.8	7.0e-294
AVK89867.1|1840675_1840933_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89868.1|1840948_1842418_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89869.1|1842476_1845995_-|tRNA	bifunctional lysine--tRNA ligase/lysyltransferase	tRNA	A0A2K9KZX5	Tupanvirus	35.6	4.7e-71
AVK89870.1|1846231_1846837_+	translation initiation factor IF-3	NA	A0A2I7S9Q1	Vibrio_phage	35.3	9.5e-12
>prophage 127
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1852691	1853717	4355637	tRNA	Orpheovirus(100.0%)	1	NA	NA
AVK92089.1|1852691_1853717_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	34.5	5.1e-26
>prophage 128
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1862702	1863905	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK89883.1|1862702_1863905_+	aspartate aminotransferase family protein	NA	A0A249XSK4	Mycobacterium_phage	28.2	8.7e-17
>prophage 129
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1875684	1880493	4355637		Paenibacillus_phage(100.0%)	1	NA	NA
AVK89889.1|1875684_1880493_+	polyketide synthase	NA	D0R7J2	Paenibacillus_phage	31.6	1.4e-25
>prophage 130
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1887557	1889333	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK89892.1|1887557_1889333_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	25.5	1.4e-39
>prophage 131
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1906087	1908811	4355637	tRNA	Staphylococcus_phage(50.0%)	3	NA	NA
AVK89907.1|1906087_1906855_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	2.9e-21
AVK89908.1|1906913_1907525_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
AVK89909.1|1907536_1908811_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	37.2	8.0e-61
>prophage 132
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1917765	1921074	4355637		Only_Syngen_Nebraska_virus(50.0%)	3	NA	NA
AVK89919.1|1917765_1919526_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	46.4	1.4e-127
AVK89920.1|1919518_1920142_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AVK89921.1|1920138_1921074_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	25.8	1.7e-20
>prophage 133
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1930295	1932777	4355637		Natrialba_phage(50.0%)	3	NA	NA
AVK89929.1|1930295_1931252_+	ParA family protein	NA	Q8JL10	Natrialba_phage	37.4	1.9e-22
AVK89930.1|1931248_1932085_+	segregation/condensation protein A	NA	NA	NA	NA	NA
AVK89931.1|1932081_1932777_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	27.2	2.5e-08
>prophage 134
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1944794	1955837	4355637	transposase	Mycobacterium_phage(40.0%)	11	NA	NA
AVK89944.1|1944794_1946055_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
AVK89945.1|1946333_1947044_-	HxlR family transcriptional regulator	NA	NA	NA	NA	NA
AVK89946.1|1947144_1948530_+	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	28.5	5.9e-33
AVK89947.1|1948562_1949132_+	TIGR03086 family protein	NA	NA	NA	NA	NA
AVK89948.1|1949156_1949927_-	glycoside hydrolase	NA	A0A2D1GPL9	Mycobacterium_phage	43.6	5.6e-25
AVK89949.1|1949923_1950862_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVK89950.1|1950828_1951020_-	cell wall anchor protein	NA	NA	NA	NA	NA
AVK89951.1|1951041_1952595_-	penicillin-binding protein	NA	A0A0Y0A2S9	Mycobacterium_phage	26.2	3.2e-11
AVK89952.1|1953026_1954583_+	succinic semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AVK89953.1|1954592_1955141_-	thioredoxin family protein	NA	NA	NA	NA	NA
AVK89954.1|1955204_1955837_-	hypothetical protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	99.5	2.5e-108
>prophage 135
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1964354	1971578	4355637		Tupanvirus(33.33%)	5	NA	NA
AVK89964.1|1964354_1966055_+	serine/threonine protein kinase	NA	A0A2K9L111	Tupanvirus	26.3	1.8e-12
AVK89965.1|1966339_1966741_-	hypothetical protein	NA	NA	NA	NA	NA
AVK89966.1|1966811_1967342_-	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
AVK89967.1|1967488_1968919_+	serine/threonine protein kinase	NA	A0A2H4UVE2	Bodo_saltans_virus	26.8	8.8e-16
AVK89968.1|1968980_1971578_+	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.0	1.3e-28
>prophage 136
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	1999311	1999551	4355637		Burkholderia_virus(100.0%)	1	NA	NA
AVK89984.1|1999311_1999551_-	hypothetical protein	NA	Q8W6R2	Burkholderia_virus	44.3	3.5e-10
>prophage 137
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2017927	2023620	4355637		Mycobacterium_phage(100.0%)	2	NA	NA
AVK90000.1|2017927_2019448_+	type VII secretion system ESX-5 subunit EccB5	NA	V5UN45	Mycobacterium_phage	38.1	2.1e-76
AVK90001.1|2019444_2023620_+	type VII secretion system ESX-5 FtsK/SpoIIIE family ATPase EccC5	NA	V5UPA0	Mycobacterium_phage	27.1	2.6e-116
>prophage 138
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2033913	2041605	4355637	protease	Mycobacterium_phage(100.0%)	5	NA	NA
AVK90013.1|2033913_2035671_+|protease	type VII secretion system ESX-5 serine protease mycosin MycP5	protease	V5UPA7	Mycobacterium_phage	34.3	7.4e-73
AVK90014.1|2035667_2036888_+	type VII secretion system ESX-5 subunit EccE5	NA	NA	NA	NA	NA
AVK90015.1|2036884_2038717_+	type VII secretion system ESX-5 AAA family ATPase EccA5	NA	V5UQM2	Mycobacterium_phage	31.0	3.1e-66
AVK90016.1|2039343_2039535_+	hypothetical protein	NA	NA	NA	NA	NA
AVK90017.1|2039637_2041605_+	PPE family protein	NA	A0A222ZKN7	Mycobacterium_phage	31.4	2.4e-16
>prophage 139
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2053627	2054332	4355637		Bacillus_virus(100.0%)	1	NA	NA
AVK90026.1|2053627_2054332_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	3.8e-12
>prophage 140
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2063002	2064922	4355637		Bacillus_virus(100.0%)	1	NA	NA
AVK90033.1|2063002_2064922_-	vitamin B12 transport ATP-binding protein BacA	NA	G3M9Y6	Bacillus_virus	28.2	1.1e-05
>prophage 141
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2076002	2078828	4355637		Prochlorococcus_phage(100.0%)	1	NA	NA
AVK90043.1|2076002_2078828_+	glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	51.4	6.6e-257
>prophage 142
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2092396	2093833	4355637		Klosneuvirus(100.0%)	1	NA	NA
AVK90054.1|2092396_2093833_-	GuaB1 family IMP dehydrogenase-related protein	NA	A0A1V0SHK8	Klosneuvirus	30.1	3.1e-45
>prophage 143
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2106703	2110715	4355637		Planktothrix_phage(50.0%)	4	NA	NA
AVK90069.1|2106703_2107813_+	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.9	1.0e-19
AVK90070.1|2107865_2108843_+	alanine and proline-rich secreted protein Apa	NA	NA	NA	NA	NA
AVK90071.1|2109294_2109600_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AVK90072.1|2109674_2110715_+	alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	28.9	1.6e-19
>prophage 144
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2123304	2123742	4355637		Bodo_saltans_virus(100.0%)	1	NA	NA
AVK90083.1|2123304_2123742_+	DUF1810 domain-containing protein	NA	A0A2H4UVK5	Bodo_saltans_virus	39.8	5.6e-14
>prophage 145
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2133877	2136014	4355637		Macacine_betaherpesvirus(100.0%)	3	NA	NA
AVK92113.1|2133877_2134408_-	resuscitation-promoting factor RpfC	NA	A0A2I6B0Z0	Macacine_betaherpesvirus	100.0	2.7e-95
AVK90091.1|2134419_2135019_-	chorismate mutase	NA	NA	NA	NA	NA
AVK90092.1|2135036_2136014_-	diacylglycerol acyltransferase	NA	A0A2I6B0H1	Macacine_betaherpesvirus	99.7	1.1e-190
>prophage 146
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2145370	2150476	4355637		Scale_drop_disease_virus(33.33%)	4	NA	NA
AVK90109.1|2145370_2146447_-	hypothetical protein	NA	A0A0K1L687	Scale_drop_disease_virus	32.5	3.9e-08
AVK90110.1|2146446_2147835_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
AVK90111.1|2147863_2149156_+	cinA-like protein	NA	B5TK85	Pseudomonas_phage	40.0	9.7e-14
AVK92115.1|2149207_2150476_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	27.3	2.1e-13
>prophage 147
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2175329	2176445	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK90127.1|2175329_2176445_+	lipoprotein	NA	S5Z991	Mycobacterium_phage	29.7	1.9e-18
>prophage 148
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2181712	2182480	4355637		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AVK90132.1|2181712_2182480_-	short-chain dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.9	1.9e-17
>prophage 149
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2189758	2194930	4355637		Synechococcus_phage(50.0%)	4	NA	NA
AVK90141.1|2189758_2192278_+	oxygenase	NA	C7BUZ5	Synechococcus_phage	34.9	7.7e-07
AVK90142.1|2192289_2193360_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVK90143.1|2193356_2193872_+	flavin reductase	NA	NA	NA	NA	NA
AVK90144.1|2193868_2194930_+	riboflavin biosynthesis protein RibA	NA	A0A2H4PQS2	Staphylococcus_phage	33.9	3.1e-34
>prophage 150
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2212764	2213733	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK90172.1|2212764_2213733_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	70.2	2.2e-127
>prophage 151
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2223535	2225851	4355637		Streptococcus_phage(100.0%)	1	NA	NA
AVK90189.1|2223535_2225851_-	cadmium-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	36.2	1.1e-87
>prophage 152
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2236204	2236987	4355637		Prochlorococcus_phage(100.0%)	1	NA	NA
AVK92124.1|2236204_2236987_+	3-alpha(or 20-beta)-hydroxysteroid dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	36.5	1.3e-05
>prophage 153
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2252541	2253582	4355637		Gordonia_phage(100.0%)	1	NA	NA
AVK90214.1|2252541_2253582_+	XRE family transcriptional regulator	NA	A0A0U4JD08	Gordonia_phage	53.2	9.3e-100
>prophage 154
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2257883	2263784	4355637		Gordonia_phage(50.0%)	2	NA	NA
AVK92126.1|2257883_2258780_-	hypothetical protein	NA	A0A1B3AYM4	Gordonia_phage	34.7	1.8e-35
AVK90222.1|2258963_2263784_-	helicase	NA	A0A2H4UVA3	Bodo_saltans_virus	23.0	1.4e-33
>prophage 155
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2269984	2272476	4355637		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
AVK90228.1|2269984_2272030_-	hypothetical protein	NA	A0A1B1ISB2	uncultured_Mediterranean_phage	26.5	3.7e-07
AVK90229.1|2272041_2272476_-	alpha-crystallin	NA	A0A1B2LRT2	Wolbachia_phage	35.0	3.3e-06
>prophage 156
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2276290	2278340	4355637		Bodo_saltans_virus(50.0%)	2	NA	NA
AVK90235.1|2276290_2277265_-	hypothetical protein	NA	A0A2H4UUE4	Bodo_saltans_virus	26.5	6.6e-15
AVK90236.1|2277266_2278340_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.5	2.5e-23
>prophage 157
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2282224	2284764	4355637		Indivirus(50.0%)	3	NA	NA
AVK90241.1|2282224_2282785_-	nicotinamidase	NA	A0A1V0SEH9	Indivirus	26.8	4.7e-05
AVK92127.1|2282825_2283143_-	DUF2784 domain-containing protein	NA	NA	NA	NA	NA
AVK90242.1|2283228_2284764_-	carboxylesterase/lipase family protein	NA	A0A1S5V000	Saudi_moumouvirus	31.9	3.6e-15
>prophage 158
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2301674	2304299	4355637		Sulfolobus_monocaudavirus(100.0%)	1	NA	NA
AVK92128.1|2301674_2304299_-	apolipoprotein N-acyltransferase	NA	A0A0N7A8R9	Sulfolobus_monocaudavirus	40.3	1.0e-25
>prophage 159
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2319429	2320353	4355637		Salmonella_phage(100.0%)	1	NA	NA
AVK90263.1|2319429_2320353_-	class A beta-lactamase BlaA	NA	A0A1B0VBP7	Salmonella_phage	42.2	2.7e-50
>prophage 160
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2324839	2325811	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK90269.1|2324839_2325811_-	hypothetical protein	NA	G8I4U5	Mycobacterium_phage	34.9	1.3e-15
>prophage 161
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2335959	2343546	4355637		Bodo_saltans_virus(33.33%)	5	NA	NA
AVK90280.1|2335959_2337729_+	serine/threonine protein kinase	NA	A0A2H4UVE2	Bodo_saltans_virus	26.4	2.4e-15
AVK92132.1|2337745_2338873_-	dipeptidase	NA	NA	NA	NA	NA
AVK90281.1|2338921_2340046_+	flap endonuclease	NA	F8WQ40	Bacillus_phage	31.8	6.5e-14
AVK90282.1|2340049_2340784_-	DUF4333 domain-containing protein	NA	NA	NA	NA	NA
AVK90283.1|2340825_2343546_-	RNA helicase	NA	M1HCW4	Acanthocystis_turfacea_Chlorella_virus	34.6	9.7e-72
>prophage 162
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2351729	2354771	4355637		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
AVK90290.1|2351729_2354771_+	ATP-dependent helicase	NA	A0A0P0YNJ0	Yellowstone_lake_phycodnavirus	30.3	1.7e-37
>prophage 163
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2364534	2366364	4355637		Lymphocystis_disease_virus(100.0%)	1	NA	NA
AVK92136.1|2364534_2366364_-	proteasome-associated ATPase	NA	Q677Q6	Lymphocystis_disease_virus	39.1	3.5e-33
>prophage 164
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2381261	2382506	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK90315.1|2381261_2382506_-	L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	NA	A0A2K9L6B7	Tupanvirus	35.5	1.1e-30
>prophage 165
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2426623	2431000	4355637		Pandoravirus(50.0%)	4	NA	NA
AVK90355.1|2426623_2427823_+	serine/threonine protein kinase	NA	S4VV57	Pandoravirus	31.2	1.5e-16
AVK92143.1|2428563_2428746_-	hypothetical protein	NA	NA	NA	NA	NA
AVK90356.1|2429014_2430403_-	3-deoxy-7-phosphoheptulonate synthase class II	NA	NA	NA	NA	NA
AVK90357.1|2430493_2431000_-	hypothetical protein	NA	A0A142UMD2	Mycobacterium_phage	44.0	1.9e-26
>prophage 166
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2437117	2445425	4355637		Catovirus(25.0%)	7	NA	NA
AVK90364.1|2437117_2438644_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	28.0	5.3e-51
AVK90365.1|2438674_2439832_-	alpha-(1-2)-phosphatidylinositol mannosyltransferase	NA	NA	NA	NA	NA
AVK92146.1|2439928_2440702_-	hypothetical protein	NA	NA	NA	NA	NA
AVK90366.1|2440796_2441954_-	endopeptidase	NA	A0A1J0GW44	Streptomyces_phage	42.6	2.0e-18
AVK90367.1|2442139_2442391_-	hypothetical protein	NA	NA	NA	NA	NA
AVK92147.1|2442500_2444438_+	DEDD exnuclease domain-containing protein	NA	G3MAD3	Bacillus_virus	33.9	9.4e-13
AVK90368.1|2444312_2445425_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.2	8.6e-43
>prophage 167
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2453621	2455580	4355637		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AVK90376.1|2453621_2455580_+	asparagine synthetase B	NA	I3UKG6	Ostreococcus_lucimarinus_virus	28.2	7.3e-21
>prophage 168
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2466962	2470326	4355637		Mycoplasma_phage(50.0%)	2	NA	NA
AVK90387.1|2466962_2468510_+	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.3	3.8e-33
AVK92150.1|2468547_2470326_-	oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	25.9	1.4e-07
>prophage 169
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2490269	2491364	4355637		Agrobacterium_phage(100.0%)	1	NA	NA
AVK90403.1|2490269_2491364_-	bifunctional RNase H/acid phosphatase	NA	A0A2L0V0T1	Agrobacterium_phage	33.3	1.1e-05
>prophage 170
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2520678	2521764	4355637		Synechococcus_phage(100.0%)	1	NA	NA
AVK90429.1|2520678_2521764_+	S-(hydroxymethyl)mycothiol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.2	2.5e-31
>prophage 171
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2535314	2536184	4355637		Powai_lake_megavirus(100.0%)	1	NA	NA
AVK90443.1|2535314_2536184_+	cyclo(L-tyrosyl-L-tyrosyl) synthase	NA	A0A167R1P4	Powai_lake_megavirus	26.1	2.4e-08
>prophage 172
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2540246	2541905	4355637		Bathycoccus_sp._RCC1105_virus(100.0%)	1	NA	NA
AVK90447.1|2540246_2541905_+	anion permease	NA	E5ESL8	Bathycoccus_sp._RCC1105_virus	29.5	1.2e-37
>prophage 173
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2557133	2559077	4355637		Catovirus(100.0%)	1	NA	NA
AVK90462.1|2557133_2559077_-	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	34.2	1.0e-107
>prophage 174
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2566578	2570854	4355637	integrase	Mycobacterium_phage(66.67%)	9	2560964:2560977	2572283:2572296
2560964:2560977	attL	TCGAGGTGCGCTCC	NA	NA	NA	NA
AVK90475.1|2566578_2567010_-	hypothetical protein	NA	A0A076GDT8	Mycobacterium_phage	47.1	2.0e-16
AVK90476.1|2567102_2567285_-	hypothetical protein	NA	NA	NA	NA	NA
AVK90477.1|2567493_2568210_+	DUF433 domain-containing protein	NA	NA	NA	NA	NA
AVK90478.1|2568219_2568552_+	hypothetical protein	NA	NA	NA	NA	NA
AVK90479.1|2568917_2569373_-|integrase	site-specific integrase	integrase	G1FGD4	Mycobacterium_phage	47.2	3.6e-24
AVK90480.1|2569389_2569515_-|integrase	integrase	integrase	NA	NA	NA	NA
AVK90481.1|2569901_2570066_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AVK92164.1|2570119_2570407_+	hypothetical protein	NA	NA	NA	NA	NA
AVK90482.1|2570509_2570854_+	DNA-binding protein	NA	K4ICM4	Acidithiobacillus_phage	44.3	7.3e-09
2572283:2572296	attR	GGAGCGCACCTCGA	NA	NA	NA	NA
>prophage 175
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2584928	2587022	4355637		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AVK90496.1|2584928_2587022_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.8	1.6e-05
>prophage 176
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2595871	2596804	4355637		Streptococcus_phage(100.0%)	1	NA	NA
AVK90505.1|2595871_2596804_+	O-acetylserine sulfhydrylase	NA	A0A1X9I5K7	Streptococcus_phage	53.4	2.4e-83
>prophage 177
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2607609	2609529	4355637		Abalone_shriveling_syndrome-associated_virus(100.0%)	1	NA	NA
AVK90512.1|2607609_2609529_-	DNA primase	NA	B8Q5B5	Abalone_shriveling_syndrome-associated_virus	30.3	1.4e-32
>prophage 178
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2617226	2621022	4355637	tRNA	Orpheovirus(50.0%)	5	NA	NA
AVK90518.1|2617226_2618618_-|tRNA	glycine--tRNA ligase	tRNA	A0A2I2L3K8	Orpheovirus	29.4	7.7e-49
AVK90519.1|2618799_2619207_+	transcriptional regulator	NA	NA	NA	NA	NA
AVK90520.1|2619203_2619596_+	transcriptional repressor	NA	NA	NA	NA	NA
AVK90521.1|2619703_2620132_-	hypothetical protein	NA	NA	NA	NA	NA
AVK90522.1|2620131_2621022_-	decaprenyl diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	38.3	1.0e-17
>prophage 179
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2626469	2631548	4355637		Pseudomonas_phage(50.0%)	5	NA	NA
AVK90528.1|2626469_2627528_-	PhoH-like protein	NA	A0A0S0MVD6	Pseudomonas_phage	44.1	7.1e-47
AVK90529.1|2627805_2629119_-	PucR family transcriptional regulator	NA	NA	NA	NA	NA
AVK90530.1|2629211_2629499_+	PE family protein	NA	NA	NA	NA	NA
AVK90531.1|2629597_2630386_-	ribosomal RNA small subunit methyltransferase E	NA	NA	NA	NA	NA
AVK90532.1|2630399_2631548_-	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	36.9	1.0e-22
>prophage 180
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2635260	2644823	4355637		Tupanvirus(100.0%)	2	NA	NA
AVK90538.1|2635260_2639646_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	23.8	1.8e-51
AVK90539.1|2639627_2644823_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.3	4.0e-82
>prophage 181
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2649153	2653398	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK90540.1|2649153_2653398_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.1	3.0e-43
>prophage 182
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2660808	2661273	4355637		Macacine_betaherpesvirus(100.0%)	1	NA	NA
AVK90546.1|2660808_2661273_-	resuscitation-promoting factor RpfD	NA	A0A2I6B0Z0	Macacine_betaherpesvirus	100.0	1.6e-83
>prophage 183
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2671521	2672577	4355637		Bacillus_virus(100.0%)	1	NA	NA
AVK90554.1|2671521_2672577_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	39.5	1.3e-29
>prophage 184
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2678899	2680861	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK90560.1|2678899_2680861_-	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	41.2	8.6e-22
>prophage 185
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2701935	2703183	4355637		Streptococcus_phage(100.0%)	1	NA	NA
AVK90578.1|2701935_2703183_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	49.7	3.3e-91
>prophage 186
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2714822	2715953	4355637		Streptococcus_phage(100.0%)	1	NA	NA
AVK90592.1|2714822_2715953_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	38.0	1.8e-51
>prophage 187
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2723019	2729886	4355637	tRNA	Anguillid_herpesvirus(33.33%)	6	NA	NA
AVK92186.1|2723019_2723430_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	52.3	2.6e-29
AVK90596.1|2723472_2723844_-	DUF4233 domain-containing protein	NA	NA	NA	NA	NA
AVK90597.1|2723840_2725304_-	dihydrofolate synthase	NA	NA	NA	NA	NA
AVK90598.1|2725300_2727931_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	40.0	7.0e-144
AVK90599.1|2728018_2729278_-	enoyl-ACP reductase	NA	NA	NA	NA	NA
AVK90600.1|2729367_2729886_-	Resuscitation-promoting factor RpfE	NA	A0A1J0GVU2	Streptomyces_phage	82.9	2.5e-29
>prophage 188
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2735913	2737194	4355637	protease	Bacillus_virus(100.0%)	1	NA	NA
AVK90606.1|2735913_2737194_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.0	4.2e-142
>prophage 189
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2740236	2741480	4355637	protease	uncultured_Caudovirales_phage(50.0%)	2	NA	NA
AVK90608.1|2740236_2740881_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A2H4JEX1	uncultured_Caudovirales_phage	31.4	5.2e-08
AVK90609.1|2740877_2741480_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	48.0	1.2e-38
>prophage 190
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2744564	2750741	4355637		Bacillus_phage(33.33%)	7	NA	NA
AVK90612.1|2744564_2745371_-	endonuclease	NA	A0A127AWE5	Bacillus_phage	28.9	6.5e-08
AVK92189.1|2745376_2745865_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
AVK90613.1|2745966_2746590_-	disulfide bond formation protein DsbA	NA	NA	NA	NA	NA
AVK90614.1|2746691_2749277_+	aminopeptidase N	NA	A0A2K9L1R3	Tupanvirus	32.2	3.6e-44
AVK90615.1|2749349_2749853_-	DUF5130 domain-containing protein	NA	NA	NA	NA	NA
AVK90616.1|2749803_2750037_-	hypothetical protein	NA	NA	NA	NA	NA
AVK92190.1|2750072_2750741_-	HNH endonuclease	NA	H6WG01	Cyanophage	35.2	1.2e-18
>prophage 191
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2760068	2762332	4355637		Tupanvirus(50.0%)	2	NA	NA
AVK90622.1|2760068_2761745_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	27.6	1.4e-44
AVK90623.1|2761825_2762332_-	hypothetical protein	NA	A0A2I2MPH3	Mycobacterium_phage	31.2	1.4e-08
>prophage 192
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2769067	2770333	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK90627.1|2769067_2770333_-	alpha/beta hydrolase	NA	A0A068F2G2	Mycobacterium_phage	38.8	2.0e-35
>prophage 193
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2793210	2797922	4355637		Pike_perch_iridovirus(50.0%)	4	NA	NA
AVK90643.1|2793210_2794800_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	62.5	1.2e-18
AVK90644.1|2794796_2795453_-	succinyl-CoA--3-ketoacid CoA transferase subunit B	NA	NA	NA	NA	NA
AVK90645.1|2795449_2796196_-	succinyl-CoA--3-ketoacid CoA transferase subunit A	NA	NA	NA	NA	NA
AVK90646.1|2796278_2797922_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	2.1e-29
>prophage 194
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2801813	2806129	4355637	transposase	Klebsiella_phage(33.33%)	3	NA	NA
AVK90651.1|2801813_2803415_-	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	38.9	9.7e-64
AVK90652.1|2803482_2804130_+	oligoribonuclease	NA	M4M9I5	Vibrio_phage	40.3	1.0e-24
AVK90653.1|2804881_2806129_-|transposase	IS256 family transposase IS1081	transposase	A0A220NQR7	Corynebacterium_phage	45.1	3.1e-81
>prophage 195
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2826177	2826900	4355637		Rhodococcus_phage(100.0%)	1	NA	NA
AVK90671.1|2826177_2826900_-	hypothetical protein	NA	A0A2P1JXS5	Rhodococcus_phage	50.7	4.1e-54
>prophage 196
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2839532	2840738	4355637		Pandoravirus(100.0%)	1	NA	NA
AVK92195.1|2839532_2840738_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	36.9	1.6e-47
>prophage 197
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2850751	2856910	4355637	tRNA	Tupanvirus(50.0%)	5	NA	NA
AVK90704.1|2850751_2853466_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	34.3	1.8e-62
AVK92198.1|2853556_2853946_-	YjbQ family protein	NA	NA	NA	NA	NA
AVK90705.1|2854052_2854727_+	hypothetical protein	NA	NA	NA	NA	NA
AVK90706.1|2854811_2855522_+	hypothetical protein	NA	NA	NA	NA	NA
AVK90707.1|2855551_2856910_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	42.8	1.7e-80
>prophage 198
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2860321	2861314	4355637		Planktothrix_phage(100.0%)	1	NA	NA
AVK90711.1|2860321_2861314_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	9.4e-33
>prophage 199
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2876309	2877191	4355637		Rhodococcus_phage(100.0%)	1	NA	NA
AVK90720.1|2876309_2877191_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	48.0	3.2e-53
>prophage 200
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2880609	2901213	4355637	tRNA	Klosneuvirus(22.22%)	15	NA	NA
AVK90724.1|2880609_2881512_+	haloalkane dehalogenase	NA	B9U1C3	Vaccinia_virus	37.6	1.2e-55
AVK90725.1|2881791_2883063_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	23.1	4.0e-12
AVK90726.1|2883059_2883734_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	31.3	6.8e-19
AVK90727.1|2883784_2884711_+	peptidylprolyl isomerase	NA	A0A1V0SCU1	Indivirus	34.2	2.3e-09
AVK90728.1|2884796_2887169_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
AVK90729.1|2887199_2887871_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	32.2	3.1e-11
AVK90730.1|2887974_2889648_-	lipoprotein	NA	NA	NA	NA	NA
AVK90731.1|2889653_2890982_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	27.6	3.8e-21
AVK90732.1|2890985_2892707_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AVK90733.1|2892816_2893164_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
AVK92204.1|2893192_2893402_-	hypothetical protein	NA	NA	NA	NA	NA
AVK90734.1|2893330_2894680_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.4	5.0e-21
AVK90735.1|2894841_2898348_+	oxidoreductase	NA	A0A1V0SBX8	Catovirus	21.6	6.7e-17
AVK92205.1|2898521_2900162_+	PE family protein	NA	NA	NA	NA	NA
AVK90736.1|2900178_2901213_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	23.9	7.0e-07
>prophage 201
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2905367	2906939	4355637		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
AVK90744.1|2905367_2906939_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	30.2	5.1e-09
>prophage 202
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2918168	2920247	4355637	tRNA	Tupanvirus(100.0%)	1	NA	NA
AVK90758.1|2918168_2920247_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
>prophage 203
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2929547	2929979	4355637		Macacine_betaherpesvirus(100.0%)	1	NA	NA
AVK90768.1|2929547_2929979_-	hypoxic response protein 1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
>prophage 204
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2934556	2935855	4355637		Archaeal_BJ1_virus(100.0%)	1	NA	NA
AVK92211.1|2934556_2935855_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
>prophage 205
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2943894	2945391	4355637		Staphylococcus_phage(100.0%)	1	NA	NA
AVK90784.1|2943894_2945391_+	arsenical-resistance protein	NA	A0A2H4PQT9	Staphylococcus_phage	38.8	1.5e-13
>prophage 206
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2949898	2950657	4355637	protease	Mycobacterium_phage(100.0%)	1	NA	NA
AVK90791.1|2949898_2950657_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A249XSS8	Mycobacterium_phage	40.8	4.7e-16
>prophage 207
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2958636	2959995	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK90800.1|2958636_2959995_-	protoporphyrinogen oxidase	NA	A0A2K9L5D8	Tupanvirus	37.4	2.4e-07
>prophage 208
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2970848	2971754	4355637		Brazilian_cedratvirus(100.0%)	1	NA	NA
AVK92218.1|2970848_2971754_-	multidrug ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.5	1.2e-13
>prophage 209
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2979786	2980251	4355637		Streptomyces_phage(100.0%)	1	NA	NA
AVK90817.1|2979786_2980251_-	dUTP diphosphatase	NA	A0A2L1IVN2	Streptomyces_phage	47.6	9.4e-28
>prophage 210
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	2983938	3002206	4355637		Cyanophage(28.57%)	21	NA	NA
AVK92219.1|2983938_2985525_+	RNA polymerase sigma factor SigA	NA	M4SMP8	Cyanophage	34.6	4.6e-42
AVK90823.1|2985561_2985990_+	RidA family protein	NA	NA	NA	NA	NA
AVK92220.1|2985917_2986307_-	DUF952 domain-containing protein	NA	NA	NA	NA	NA
AVK92221.1|2986303_2986561_-	hypothetical protein	NA	NA	NA	NA	NA
AVK90824.1|2986676_2987651_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
AVK92222.1|2987651_2987900_-	DUF3039 domain-containing protein	NA	A0A059VGG3	Mycobacterium_phage	47.5	8.3e-15
AVK90825.1|2987942_2988389_+	DUF3099 domain-containing protein	NA	NA	NA	NA	NA
AVK92223.1|2988564_2989536_+	RNA polymerase sigma factor SigB	NA	M4SMP8	Cyanophage	35.7	6.6e-39
AVK90826.1|2989668_2990361_+	iron-dependent repressor IdeR	NA	NA	NA	NA	NA
AVK92224.1|2990373_2991432_-	DUF4192 domain-containing protein	NA	NA	NA	NA	NA
AVK92225.1|2991544_2992951_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.2	2.4e-42
AVK90827.1|2993168_2994143_+	PAC2 family protein	NA	NA	NA	NA	NA
AVK90828.1|2994201_2995227_+	alpha/beta hydrolase	NA	G1DAB1	Mycobacterium_virus	30.0	9.7e-17
AVK90829.1|2995275_2995962_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AVK92226.1|2995970_2996465_-	FABP family protein	NA	NA	NA	NA	NA
AVK90830.1|2996516_2996981_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AVK90831.1|2997143_2997641_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AVK90832.1|2997891_2998602_+	LexA repressor	NA	A0A1B1P7Q3	Bacillus_phage	49.2	8.0e-10
AVK90833.1|2998623_3000723_-	hypothetical protein	NA	NA	NA	NA	NA
AVK90834.1|3000738_3000987_+	hypothetical protein	NA	NA	NA	NA	NA
AVK90835.1|3001012_3002206_+	hypothetical protein	NA	A0A1D7XFL1	Escherichia_phage	33.3	8.4e-28
>prophage 211
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3012924	3017528	4355637		Mycobacterium_phage(100.0%)	3	NA	NA
AVK90845.1|3012924_3013779_+	DUF5131 domain-containing protein	NA	A0A088F7U1	Mycobacterium_phage	48.6	1.8e-64
AVK90846.1|3014665_3015190_-	regulatory protein RecX	NA	NA	NA	NA	NA
AVK90847.1|3015155_3017528_-	intein-containing recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	50.0	5.2e-21
>prophage 212
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3025896	3028548	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK90857.1|3025896_3028548_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	57.9	4.2e-112
>prophage 213
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3033234	3036125	4355637		Rhodococcus_phage(50.0%)	3	NA	NA
AVK92231.1|3033234_3033987_-	thymidylate synthase (FAD)	NA	M9MU99	Rhodococcus_phage	47.4	4.9e-50
AVK90863.1|3034230_3034506_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AVK90864.1|3034502_3036125_-	restriction endonuclease subunit M	NA	A0A2H4UVW8	Bodo_saltans_virus	22.1	5.9e-08
>prophage 214
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3039171	3040522	4355637		Ralstonia_phage(50.0%)	2	NA	NA
AVK92232.1|3039171_3039651_-	dihydrofolate reductase	NA	A0A0A8JB64	Ralstonia_phage	38.6	6.8e-21
AVK90872.1|3039721_3040522_-	thymidylate synthase	NA	A0A1B3AY68	Gordonia_phage	70.5	2.2e-109
>prophage 215
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3055085	3056402	4355637		Acanthamoeba_polyphaga_lentillevirus(100.0%)	1	NA	NA
AVK90886.1|3055085_3056402_-	peptidase M16	NA	J3IZ03	Acanthamoeba_polyphaga_lentillevirus	24.4	5.4e-28
>prophage 216
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3066242	3068203	4355637	transposase	Microcystis_virus(50.0%)	2	NA	NA
AVK90894.1|3066242_3067622_-|transposase	transposase	transposase	A0A7P9	Microcystis_virus	30.3	9.3e-31
AVK90895.1|3067621_3068203_-|transposase	IS607-like element IS1602 family transposase	transposase	F9VHY9	Thermus_phage	30.6	1.4e-17
>prophage 217
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3086608	3087870	4355637	transposase	Burkholderia_virus(100.0%)	1	NA	NA
AVK90914.1|3086608_3087870_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
>prophage 218
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3104305	3105388	4355637		Bacillus_virus(100.0%)	1	NA	NA
AVK90926.1|3104305_3105388_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	6.9e-21
>prophage 219
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3111377	3114080	4355637		Bodo_saltans_virus(100.0%)	1	NA	NA
AVK90932.1|3111377_3114080_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.1	1.6e-21
>prophage 220
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3119245	3120838	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK90939.1|3119245_3120838_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	33.0	7.7e-45
>prophage 221
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3131411	3137853	4355637		Erysipelothrix_phage(33.33%)	6	NA	NA
AVK90947.1|3131411_3132791_+	mycothione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.6	1.1e-34
AVK90948.1|3132890_3134009_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
AVK90949.1|3134554_3134737_+	hypothetical protein	NA	NA	NA	NA	NA
AVK90950.1|3134789_3135566_-	3-oxoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.8	4.0e-15
AVK90951.1|3135562_3136930_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AVK90952.1|3136926_3137853_-	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	H9D1C6	Salinivibrio_phage	32.5	4.2e-11
>prophage 222
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3160435	3162639	4355637	transposase	Microcystis_virus(50.0%)	2	NA	NA
AVK90978.1|3160435_3161752_-|transposase	transposase	transposase	A0A7P9	Microcystis_virus	29.1	1.9e-28
AVK90979.1|3161751_3162639_-|transposase	IS607 family transposase	transposase	F9VHY9	Thermus_phage	27.3	2.6e-10
>prophage 223
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3169600	3170497	4355637		Brevibacillus_phage(100.0%)	1	NA	NA
AVK90986.1|3169600_3170497_-	recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	27.9	3.1e-19
>prophage 224
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3178368	3179163	4355637		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
AVK90993.1|3178368_3179163_-	ribonuclease HII	NA	R4THQ2	Phaeocystis_globosa_virus	26.9	7.1e-07
>prophage 225
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3184545	3200570	4355637		Erythrobacter_phage(20.0%)	12	NA	NA
AVK91002.1|3184545_3185421_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	34.9	3.4e-10
AVK91003.1|3185480_3186068_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AVK91004.1|3186069_3187905_-	D-amino acid aminohydrolase	NA	NA	NA	NA	NA
AVK91005.1|3187973_3189731_-	serine/threonine protein kinase	NA	A0A0M3SGV8	Mollivirus	23.4	1.3e-05
AVK91006.1|3189774_3190887_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91007.1|3190914_3192492_-	signal recognition particle protein	NA	NA	NA	NA	NA
AVK91008.1|3192569_3194450_+	ATP-dependent helicase	NA	I4AZM6	Saccharomonospora_phage	41.0	3.9e-88
AVK91009.1|3194460_3196887_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
AVK91010.1|3196944_3197283_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
AVK91011.1|3197279_3198713_-	ammonia channel protein	NA	H8ZJB2	Ostreococcus_tauri_virus	31.8	1.4e-40
AVK91012.1|3199083_3199305_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91013.1|3199301_3200570_-	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	34.5	1.5e-11
>prophage 226
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3205031	3206927	4355637		Bacillus_phage(50.0%)	2	NA	NA
AVK92249.1|3205031_3205901_-	formamidopyrimidine-DNA glycosylase	NA	F8WPX6	Bacillus_phage	25.1	1.1e-13
AVK91017.1|3206204_3206927_-	ribonuclease 3	NA	A0A2K9R4Y7	Dishui_lake_phycodnavirus	35.4	1.9e-22
>prophage 227
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3211820	3234107	4355637		Paenibacillus_phage(100.0%)	4	NA	NA
AVK91021.1|3211820_3217451_+	phthiocerol type I polyketide synthase PpsA	NA	D0R7J2	Paenibacillus_phage	29.5	1.4e-27
AVK91022.1|3217447_3222064_+	phthiocerol type I polyketide synthase PpsB	NA	D0R7J2	Paenibacillus_phage	36.3	1.1e-32
AVK91023.1|3222060_3228627_+	phthiocerol type I polyketide synthase PpsC	NA	D0R7J2	Paenibacillus_phage	34.6	1.6e-32
AVK91024.1|3228623_3234107_+	phthiocerol type I polyketide synthase PpsD	NA	D0R7J2	Paenibacillus_phage	31.6	3.7e-30
>prophage 228
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3238589	3239585	4355637		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AVK92252.1|3238589_3239585_+	DrrA-related ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.5	1.5e-22
>prophage 229
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3242755	3249091	4355637		Paenibacillus_phage(100.0%)	1	NA	NA
AVK91029.1|3242755_3249091_-	mycocerosic acid synthase	NA	D0R7J2	Paenibacillus_phage	31.9	2.9e-26
>prophage 230
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3274122	3275942	4355637		uncultured_virus(50.0%)	2	NA	NA
AVK92256.1|3274122_3275088_-	FkbM family methyltransferase	NA	A0A218MM68	uncultured_virus	25.5	1.5e-06
AVK91042.1|3275210_3275942_+	FkbM family methyltransferase	NA	Q58M88	Prochlorococcus_phage	33.3	1.3e-07
>prophage 231
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3283071	3285358	4355637		Synechococcus_phage(50.0%)	3	NA	NA
AVK91048.1|3283071_3284004_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	37.3	2.1e-10
AVK91049.1|3284643_3284829_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91050.1|3284872_3285358_-	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	32.5	9.3e-18
>prophage 232
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3291115	3293492	4355637		Moumouvirus(50.0%)	3	NA	NA
AVK91056.1|3291115_3292246_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	34.3	5.0e-30
AVK91057.1|3292476_3292647_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91058.1|3292643_3293492_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.6	1.0e-56
>prophage 233
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3298611	3302289	4355637	transposase	Pandoravirus(33.33%)	4	NA	NA
AVK91064.1|3298611_3299295_-	uracil-DNA glycosylase	NA	S4VYQ4	Pandoravirus	40.7	3.8e-33
AVK91065.1|3299327_3300329_-	thiamine-monophosphate kinase	NA	NA	NA	NA	NA
AVK91066.1|3300325_3301705_-	resolvase	NA	I4AZM3	Saccharomonospora_phage	32.9	2.3e-21
AVK91067.1|3301704_3302289_-|transposase	IS607 family transposase	transposase	F9VHY9	Thermus_phage	29.9	3.2e-17
>prophage 234
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3310070	3310715	4355637		Streptomyces_phage(100.0%)	1	NA	NA
AVK91073.1|3310070_3310715_-	DNA-binding protein HU	NA	A0A2P1N0A2	Streptomyces_phage	45.4	2.8e-14
>prophage 235
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3320657	3322244	4355637		Brazilian_cedratvirus(100.0%)	1	NA	NA
AVK91082.1|3320657_3322244_-	D-3-phosphoglycerate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	35.5	1.2e-34
>prophage 236
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3325786	3330161	4355637		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
AVK91087.1|3325786_3326446_+	hypothetical protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	32.1	5.3e-08
AVK91088.1|3326759_3327761_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AVK91089.1|3327798_3328305_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AVK91090.1|3328304_3330161_-	acetolactate synthase large subunit IlvB1	NA	E4WLQ6	Ostreococcus_tauri_virus	29.3	9.6e-55
>prophage 237
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3335997	3341795	4355637	tRNA	Micromonas_sp._RCC1109_virus(50.0%)	5	NA	NA
AVK91095.1|3335997_3337029_-	ATP-dependent 6-phosphofructokinase	NA	E5EQL4	Micromonas_sp._RCC1109_virus	24.2	2.3e-13
AVK91096.1|3337124_3338609_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	tRNA	NA	NA	NA	NA
AVK91097.1|3338605_3338905_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AVK92263.1|3338989_3339646_+	amino acid-binding protein	NA	NA	NA	NA	NA
AVK91098.1|3339719_3341795_-	DNA ligase (NAD(+)) LigA	NA	A0A0A8J9A9	Ralstonia_phage	37.8	8.3e-108
>prophage 238
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3348494	3352186	4355637	transposase,tRNA	Corynebacterium_phage(50.0%)	3	NA	NA
AVK91105.1|3348494_3349742_-|transposase	IS256 family transposase IS1081	transposase	A0A220NQR7	Corynebacterium_phage	45.1	3.1e-81
AVK91106.1|3349904_3351008_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AVK91107.1|3351004_3352186_-	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	27.6	1.4e-30
>prophage 239
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3368174	3369038	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK91122.1|3368174_3369038_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	27.7	7.7e-07
>prophage 240
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3373404	3385768	4355637		Mycobacterium_phage(28.57%)	14	NA	NA
AVK91125.1|3373404_3374445_+	NADP-dependent alcohol dehydrogenase C	NA	A0A2K9L7I1	Tupanvirus	41.2	3.7e-72
AVK91126.1|3374433_3374808_-	DUF3349 domain-containing protein	NA	NA	NA	NA	NA
AVK91127.1|3375141_3375426_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91128.1|3375523_3376498_-	ribonucleoside-diphosphate reductase subunit beta nrdF2	NA	R4TBI6	Mycobacterium_phage	85.3	8.0e-154
AVK91129.1|3376628_3378203_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AVK92271.1|3378336_3379077_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVK91130.1|3379204_3381382_-	ribonucleotide-diphosphate reductase	NA	V9VI16	Lactococcus_phage	51.3	4.4e-208
AVK91131.1|3381351_3381804_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
AVK91132.1|3381838_3382078_-	NrdH-redoxin	NA	V5UN81	Mycobacterium_phage	68.0	3.4e-21
AVK91133.1|3382055_3382460_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91134.1|3382540_3383095_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	4.0e-09
AVK91135.1|3383186_3383801_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVK91136.1|3383810_3384851_+	DNA polymerase IV	NA	A0A2H4JBL5	uncultured_Caudovirales_phage	31.8	7.1e-15
AVK91137.1|3384904_3385768_-	short chain dehydrogenase	NA	W8CYX9	Bacillus_phage	37.2	2.2e-06
>prophage 241
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3406714	3413162	4355637		Tupanvirus(50.0%)	4	NA	NA
AVK91155.1|3406714_3408526_+	hydrolase	NA	A0A2K9L1A5	Tupanvirus	34.8	9.6e-84
AVK91156.1|3408526_3408928_+	hydrogenase	NA	NA	NA	NA	NA
AVK92275.1|3408943_3409771_-	TIGR03619 family F420-dependent LLM class oxidoreductase	NA	NA	NA	NA	NA
AVK91157.1|3409829_3413162_-	serine/threonine-protein kinase PknK	NA	A0A1M7XTW9	Cedratvirus	28.4	7.8e-15
>prophage 242
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3418954	3426272	4355637		Synechococcus_phage(33.33%)	7	NA	NA
AVK91163.1|3418954_3420061_+	alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.7	2.3e-27
AVK92276.1|3420098_3421517_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
AVK91164.1|3421513_3422938_+	diacylglycerol O-acyltransferase	NA	NA	NA	NA	NA
AVK91165.1|3422934_3424446_+	long-chain-fatty-acid--CoA ligase FadD13	NA	A0A2H4PQM9	Staphylococcus_phage	27.3	5.6e-45
AVK91166.1|3424725_3424938_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91167.1|3424942_3425245_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91168.1|3425384_3426272_+	hypothetical protein	NA	A0A0M4RAA7	Mycobacterium_phage	50.2	1.4e-67
>prophage 243
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3436474	3438543	4355637		Staphylococcus_phage(50.0%)	3	NA	NA
AVK91178.1|3436474_3436957_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	48.6	1.5e-31
AVK91179.1|3436959_3437853_-	ABC transporter permease	NA	NA	NA	NA	NA
AVK92278.1|3437853_3438543_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	39.7	2.5e-32
>prophage 244
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3447932	3451119	4355637	transposase	Vibrio_phage(33.33%)	4	NA	NA
AVK92280.1|3447932_3448463_+	nucleoside deaminase	NA	A0A2I7QX61	Vibrio_phage	39.0	5.8e-05
AVK91190.1|3448481_3448625_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91191.1|3448624_3449872_+|transposase	IS256 family transposase IS1081	transposase	A0A220NQR7	Corynebacterium_phage	45.1	3.1e-81
AVK91192.1|3449949_3451119_+	adenylyltransferase/sulfurtransferase MoeZ	NA	A0A1V0SAV8	Catovirus	25.1	1.6e-10
>prophage 245
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3507726	3508626	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK92287.1|3507726_3508626_-	alpha/beta hydrolase	NA	A0A1C9LZ53	Mycobacterium_phage	31.1	9.8e-05
>prophage 246
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3513326	3514187	4355637		Ralstonia_phage(100.0%)	1	NA	NA
AVK91247.1|3513326_3514187_+	alpha/beta hydrolase	NA	A0A1L7N183	Ralstonia_phage	28.6	7.4e-10
>prophage 247
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3522474	3523509	4355637	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
AVK92289.1|3522474_3523509_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.3	9.1e-31
>prophage 248
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3534282	3542210	4355637		Bodo_saltans_virus(50.0%)	5	NA	NA
AVK92291.1|3534282_3536385_-	ATP-dependent DNA helicase UvrD2	NA	A0A2H4UW05	Bodo_saltans_virus	24.2	4.9e-15
AVK91268.1|3536508_3536763_+	NrdH-redoxin	NA	NA	NA	NA	NA
AVK91269.1|3536775_3537717_-	NADH pyrophosphatase	NA	NA	NA	NA	NA
AVK91270.1|3537775_3538843_-	potassium transporter Kef	NA	NA	NA	NA	NA
AVK92292.1|3538904_3542210_-	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	20.6	5.4e-08
>prophage 249
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3552970	3556666	4355637		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	3	NA	NA
AVK91279.1|3552970_3554554_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	30.6	6.9e-46
AVK91280.1|3554566_3555790_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91281.1|3555865_3556666_-	ParA family protein	NA	V5UP47	Mycobacterium_phage	26.8	1.3e-16
>prophage 250
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3560886	3564725	4355637		Mycobacterium_phage(50.0%)	7	NA	NA
AVK91287.1|3560886_3561141_+	WhiB family transcriptional regulator	NA	A0A2P1N2X5	Mycobacterium_phage	43.9	8.8e-12
AVK91288.1|3561202_3562708_-	ATPase	NA	NA	NA	NA	NA
AVK92296.1|3562724_3562940_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
AVK92297.1|3563140_3563215_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91289.1|3563224_3563530_-	anti-sigma factor RshA	NA	NA	NA	NA	NA
AVK91290.1|3563526_3564078_-	hypothetical protein	NA	NA	NA	NA	NA
AVK92298.1|3564074_3564725_-	ECF RNA polymerase sigma factor SigH	NA	A0A076YQ50	Rhizobium_phage	26.5	6.8e-08
>prophage 251
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3567737	3568496	4355637		Stenotrophomonas_phage(100.0%)	1	NA	NA
AVK91294.1|3567737_3568496_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	37.6	1.5e-27
>prophage 252
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3590084	3594822	4355637		Bacillus_phage(66.67%)	4	NA	NA
AVK91310.1|3590084_3591788_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	27.6	2.3e-18
AVK91311.1|3591837_3592524_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.6	1.6e-39
AVK91312.1|3592593_3593238_-	thymidylate kinase	NA	NA	NA	NA	NA
AVK92302.1|3593334_3594822_-	adenosylhomocysteinase	NA	S4W1G4	Pandoravirus	29.2	1.4e-43
>prophage 253
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3605046	3605316	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK92304.1|3605046_3605316_-	WhiB family transcriptional regulator	NA	A0A2P1CGA4	Mycobacterium_phage	81.2	6.4e-29
>prophage 254
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3610072	3617845	4355637		Sphingomonas_phage(33.33%)	7	NA	NA
AVK91326.1|3610072_3611152_-	mannose-1-phosphate guanylyltransferase	NA	H9NC64	Sphingomonas_phage	32.6	2.1e-17
AVK92305.1|3611153_3612047_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AVK91327.1|3612057_3612972_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.8	9.9e-29
AVK91328.1|3613047_3614544_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
AVK92306.1|3614582_3615272_+	TIGR03089 family protein	NA	NA	NA	NA	NA
AVK91329.1|3615396_3615678_+	DUF1490 domain-containing protein	NA	NA	NA	NA	NA
AVK91330.1|3615688_3617845_+	copper-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.5	6.2e-82
>prophage 255
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3623276	3623801	4355637		Tetraselmis_virus(100.0%)	1	NA	NA
AVK91334.1|3623276_3623801_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	1.1e-21
>prophage 256
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3633268	3636894	4355637		Bacillus_phage(50.0%)	5	NA	NA
AVK91343.1|3633268_3634054_-	B/F/G family RNA polymerase sigma-70 factor	NA	A0A0Y0AU18	Bacillus_phage	33.2	3.6e-19
AVK91344.1|3634050_3634488_-	anti-sigma regulatory factor	NA	NA	NA	NA	NA
AVK91345.1|3634685_3635099_-	protein USFY	NA	NA	NA	NA	NA
AVK91346.1|3635133_3635511_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91347.1|3635544_3636894_-	L-lysine-epsilon aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	45.5	1.1e-111
>prophage 257
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3641874	3646416	4355637		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVK91353.1|3641874_3646416_+	ATP-dependent helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	37.5	2.6e-05
>prophage 258
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3659963	3661568	4355637		Streptococcus_phage(100.0%)	1	NA	NA
AVK91365.1|3659963_3661568_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	29.9	7.5e-48
>prophage 259
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3667283	3668567	4355637		Geobacillus_virus(100.0%)	1	NA	NA
AVK91372.1|3667283_3668567_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	43.3	5.0e-79
>prophage 260
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3682167	3684821	4355637		Klosneuvirus(50.0%)	2	NA	NA
AVK91387.1|3682167_3683535_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
AVK91388.1|3683603_3684821_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
>prophage 261
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3693954	3695304	4355637		Pandoravirus(100.0%)	1	NA	NA
AVK91397.1|3693954_3695304_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
>prophage 262
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3732274	3732646	4355637		Pandoravirus(100.0%)	1	NA	NA
AVK91405.1|3732274_3732646_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
>prophage 263
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3745562	3748802	4355637		Streptomyces_phage(100.0%)	1	NA	NA
AVK91423.1|3745562_3748802_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
>prophage 264
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3770335	3771199	4355637		Tupanvirus(100.0%)	1	NA	NA
AVK91437.1|3770335_3771199_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	33.2	6.9e-32
>prophage 265
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3783602	3784655	4355637		Stenotrophomonas_phage(100.0%)	1	NA	NA
AVK91446.1|3783602_3784655_-	hypothetical protein	NA	A0A2D2W2B8	Stenotrophomonas_phage	26.5	1.3e-11
>prophage 266
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3789015	3789315	4355637		Macacine_betaherpesvirus(100.0%)	1	NA	NA
AVK91451.1|3789015_3789315_+	antitoxin VapB47	NA	A0A2I6AZZ6	Macacine_betaherpesvirus	100.0	4.2e-45
>prophage 267
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3792693	3794283	4355637		Klosneuvirus(100.0%)	1	NA	NA
AVK91455.1|3792693_3794283_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.5	3.6e-87
>prophage 268
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3797655	3801353	4355637	tRNA	uncultured_virus(50.0%)	4	NA	NA
AVK91460.1|3797655_3797964_+	WhiB family transcriptional regulator	NA	A0A159B6S6	Tsukamurella_phage	48.5	5.0e-09
AVK91461.1|3798035_3799655_-	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	51.4	9.6e-136
AVK91462.1|3799749_3800052_-	molecular chaperone GroES	NA	A0A221S3C8	uncultured_virus	53.8	9.5e-21
AVK91463.1|3800318_3801353_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	S4VW33	Pandoravirus	37.6	1.6e-35
>prophage 269
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3812852	3814727	4355637		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AVK91474.1|3812852_3814727_-	glutamine--fructose-6-phosphate aminotransferase	NA	Q84421	Paramecium_bursaria_Chlorella_virus	36.1	4.6e-97
>prophage 270
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3822364	3826075	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK91483.1|3822364_3826075_-	type VII secretion system ESX-4 FtsK/SpoIIIE family ATPase EccC4	NA	V5UPA0	Mycobacterium_phage	27.1	2.7e-77
>prophage 271
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3839671	3844918	4355637		Enterobacteria_phage(50.0%)	5	NA	NA
AVK91498.1|3839671_3840667_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.2	3.1e-76
AVK91499.1|3840668_3841277_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	37.8	5.7e-25
AVK92331.1|3841798_3842752_+	HNH endonuclease	NA	NA	NA	NA	NA
AVK91500.1|3842809_3843904_-	NAD(P)-dependent oxidoreductase	NA	A0A1D7XFE8	Escherichia_phage	28.0	1.8e-05
AVK91501.1|3843907_3844918_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.7	1.6e-27
>prophage 272
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3857087	3857870	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK91507.1|3857087_3857870_-	DUF2510 domain-containing protein	NA	A0A088F7R2	Mycobacterium_phage	63.2	7.0e-07
>prophage 273
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3892301	3893849	4355637		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
AVK91533.1|3892301_3893849_-	acetolactate synthase large subunit	NA	E5EQ70	Micromonas_sp._RCC1109_virus	33.3	3.9e-09
>prophage 274
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3899416	3901063	4355637		Staphylococcus_phage(100.0%)	1	NA	NA
AVK91535.1|3899416_3901063_-	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	23.6	9.2e-17
>prophage 275
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3922180	3923092	4355637		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
AVK91554.1|3922180_3923092_-	acetaldehyde dehydrogenase	NA	E5EQ71	Micromonas_sp._RCC1109_virus	35.5	1.7e-36
>prophage 276
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3926650	3928090	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK91557.1|3926650_3928090_+	PPE family protein	NA	A0A222ZKN7	Mycobacterium_phage	31.4	1.5e-23
>prophage 277
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3935973	3936888	4355637		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AVK91566.1|3935973_3936888_-	short-chain dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.4	2.4e-11
>prophage 278
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3941276	3943334	4355637		Synechococcus_phage(100.0%)	1	NA	NA
AVK91573.1|3941276_3943334_+	electron transfer protein FdxB	NA	C7BUZ5	Synechococcus_phage	36.8	6.3e-07
>prophage 279
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3950228	3951752	4355637		Hepacivirus(100.0%)	1	NA	NA
AVK91580.1|3950228_3951752_+	fatty acid--CoA ligase family protein	NA	Q75ZG1	Hepacivirus	27.4	1.1e-37
>prophage 280
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3970982	3972392	4355637	tRNA	Catovirus(100.0%)	1	NA	NA
AVK91597.1|3970982_3972392_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	25.9	7.8e-41
>prophage 281
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	3984444	3991554	4355637	protease,tRNA	Mycobacterium_virus(25.0%)	4	NA	NA
AVK91610.1|3984444_3985272_+	N-acetylmuramoyl-L-alanine amidase	NA	G8I9P6	Mycobacterium_virus	63.9	2.9e-96
AVK91611.1|3986771_3989318_-|protease	ATP-dependent Clp protease ATP-binding protein	protease	K4FB40	Cronobacter_phage	39.7	1.8e-128
AVK91612.1|3989594_3989933_-	nucleoid-associated protein	NA	A0A2D1GPL8	Mycobacterium_phage	42.4	4.6e-16
AVK91613.1|3990036_3991554_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	34.7	6.6e-70
>prophage 283
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4060777	4064273	4355637		Acanthocystis_turfacea_Chlorella_virus(50.0%)	5	NA	NA
AVK91672.1|4060777_4061233_-	RidA family protein	NA	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	39.6	4.9e-21
AVK91673.1|4061248_4061410_-	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
AVK91674.1|4061494_4062517_+	anion transporter ATPase	NA	NA	NA	NA	NA
AVK91675.1|4062513_4063674_+	anion transporter ATPase	NA	NA	NA	NA	NA
AVK91676.1|4063916_4064273_-	WhiB family transcriptional regulator	NA	A0A159B6S6	Tsukamurella_phage	50.0	1.8e-10
>prophage 284
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4070013	4071444	4355637		Mollivirus(100.0%)	1	NA	NA
AVK91679.1|4070013_4071444_-	cytochrome P450	NA	A0A0M4JJK6	Mollivirus	26.6	8.8e-24
>prophage 285
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4092748	4093759	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK92367.1|4092748_4093759_-	DUF4185 domain-containing protein	NA	B5LJL4	Mycobacterium_phage	31.5	7.9e-11
>prophage 286
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4106395	4109391	4355637		Tupanvirus(50.0%)	2	NA	NA
AVK91710.1|4106395_4107658_+	fatty-acid synthase	NA	A0A2K9L4K8	Tupanvirus	34.0	1.4e-36
AVK91711.1|4107654_4109391_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	36.2	1.7e-42
>prophage 287
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4112872	4113874	4355637		Vaccinia_virus(100.0%)	1	NA	NA
AVK91715.1|4112872_4113874_+	oxidoreductase	NA	Q1M1E9	Vaccinia_virus	34.4	1.2e-08
>prophage 288
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4124417	4125494	4355637		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AVK91719.1|4124417_4125494_+	ATP-dependent DNA ligase	NA	A0A2H4JD86	uncultured_Caudovirales_phage	28.2	2.7e-17
>prophage 289
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4134884	4141199	4355637	integrase	Acidithiobacillus_phage(40.0%)	11	4134901:4134915	4140773:4140787
AVK91727.1|4134884_4136867_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.5	8.8e-91
4134901:4134915	attL	CCAGCGGCGCGGCGC	NA	NA	NA	NA
AVK91728.1|4136933_4137296_+	transcriptional regulator	NA	NA	NA	NA	NA
AVK91729.1|4137379_4137592_-	DUF2237 domain-containing protein	NA	NA	NA	NA	NA
AVK91730.1|4137664_4138000_-	PE family protein	NA	NA	NA	NA	NA
AVK91731.1|4138217_4138601_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91732.1|4138730_4139090_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91733.1|4139122_4139632_-	hypothetical protein	NA	K4HZX4	Acidithiobacillus_phage	42.6	4.0e-11
AVK91734.1|4139699_4140092_-	excisionase	NA	K4ICM4	Acidithiobacillus_phage	47.0	4.8e-17
AVK92375.1|4140249_4140450_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91735.1|4140355_4140583_+|integrase	integrase	integrase	A0A0E3XBN7	Gordonia_phage	72.4	1.5e-15
AVK91736.1|4140740_4141199_-	nucleoside deaminase	NA	S4VYT2	Pandoravirus	37.1	2.2e-05
4140773:4140787	attR	CCAGCGGCGCGGCGC	NA	NA	NA	NA
>prophage 290
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4144780	4154476	4355637		Organic_Lake_phycodnavirus(20.0%)	9	NA	NA
AVK91741.1|4144780_4145911_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	30.1	1.3e-06
AVK92378.1|4145919_4146867_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVK92377.1|4147031_4147334_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AVK91742.1|4147355_4148411_-	phosphotransferase family protein	NA	NA	NA	NA	NA
AVK91743.1|4148489_4150370_-	alkyl/aryl-sulfatase	NA	A0A2P0VMX1	Tetraselmis_virus	46.4	2.8e-139
AVK91744.1|4150540_4151020_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91745.1|4151075_4152503_-	sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	24.5	1.3e-06
AVK92379.1|4152573_4153278_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.9	1.9e-35
AVK92380.1|4153786_4154476_+	hypothetical protein	NA	A0A2P1CG82	Mycobacterium_phage	53.4	4.6e-55
>prophage 291
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4158627	4159689	4355637		Pacmanvirus(100.0%)	1	NA	NA
AVK91750.1|4158627_4159689_+	aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	25.3	4.7e-14
>prophage 292
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4169023	4169845	4355637		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AVK91757.1|4169023_4169845_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.8	5.4e-10
>prophage 293
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4173633	4179702	4355637		Anomala_cuprea_entomopoxvirus(33.33%)	6	NA	NA
AVK91761.1|4173633_4174455_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.8	5.4e-10
AVK91762.1|4174451_4175366_+	galactofuranosyl transferase GlfT1	NA	NA	NA	NA	NA
AVK91763.1|4175362_4176205_+	ABC transporter permease	NA	NA	NA	NA	NA
AVK91764.1|4176360_4177341_+	dTDP-glucose 4,6-dehydratase	NA	A0A0E3FNQ3	Synechococcus_phage	32.5	1.2e-32
AVK91765.1|4177424_4178498_+	hypothetical protein	NA	NA	NA	NA	NA
AVK91766.1|4178478_4179702_-	hypothetical protein	NA	W8ED04	Mycobacterium_phage	31.4	3.4e-08
>prophage 294
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4209437	4212741	4355637		Macacine_betaherpesvirus(66.67%)	3	NA	NA
AVK91779.1|4209437_4210448_-	cutinase family protein	NA	A0A2K9VEH2	Gordonia_phage	28.6	6.9e-07
AVK91780.1|4210645_4211545_-	MPT51/MPB51 antigen	NA	A0A2I6AZH7	Macacine_betaherpesvirus	38.4	5.1e-46
AVK91781.1|4211724_4212741_-	diacylglycerol acyltransferase	NA	A0A2I6AZZ6	Macacine_betaherpesvirus	100.0	1.3e-178
>prophage 295
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4218358	4222500	4355637		Streptococcus_phage(50.0%)	3	NA	NA
AVK91784.1|4218358_4219558_-	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	43.5	8.8e-86
AVK92386.1|4219821_4220676_+	exported repetitive protein	NA	NA	NA	NA	NA
AVK92387.1|4220880_4222500_+	cold-shock protein	NA	A0A159B6I5	Gordonia_phage	39.4	1.1e-06
>prophage 296
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4232803	4234018	4355637		Mycobacterium_phage(100.0%)	1	NA	NA
AVK91795.1|4232803_4234018_+	PE-PPE domain-containing protein	NA	A0A222ZKN7	Mycobacterium_phage	35.6	6.3e-23
>prophage 297
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4239307	4245688	4355637		Paenibacillus_phage(100.0%)	1	NA	NA
AVK91798.1|4239307_4245688_-	phthioceranic/hydroxyphthioceranic acid synthase	NA	D0R7J2	Paenibacillus_phage	30.1	4.6e-24
>prophage 298
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4253737	4254997	4355637	tRNA	Orpheovirus(100.0%)	1	NA	NA
AVK91806.1|4253737_4254997_-|tRNA	serine--tRNA ligase	tRNA	A0A2I2L4X3	Orpheovirus	33.8	7.7e-56
>prophage 299
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4266784	4267408	4355637		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
AVK91817.1|4266784_4267408_+	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	41.1	1.5e-33
>prophage 300
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4289441	4301138	4355637		Mycobacterium_phage(40.0%)	10	NA	NA
AVK91839.1|4289441_4291163_+	type VII secretion system ESX-1 AAA family ATPase EccA1	NA	V5UQM2	Mycobacterium_phage	33.2	8.6e-58
AVK91840.1|4291166_4292609_+	type VII secretion system ESX-1 subunit EccB1	NA	NA	NA	NA	NA
AVK91841.1|4292608_4294852_+	type VII secretion system ESX-1 FtsK/SpoIIIE family ATPase EccCa1	NA	A0A142F150	Bacillus_phage	28.6	7.6e-14
AVK91842.1|4294848_4294965_+	uridylate kinase	NA	NA	NA	NA	NA
AVK91843.1|4294954_4296730_+	type VII secretion system ESX-1 FtsK/SpoIIIE family ATPase EccCb1	NA	A0A1P8DJB2	Virus_Rctr71	26.7	1.4e-07
AVK91844.1|4296872_4297169_+	type VII secretion system ESX-1 target PE35	NA	NA	NA	NA	NA
AVK92398.1|4297202_4298309_+	type VII secretion system ESX-1 target PPE68	NA	NA	NA	NA	NA
AVK91845.1|4298401_4298704_+	type VII secretion system ESX-1 WXG100 family target CFP-10	NA	NA	NA	NA	NA
AVK91846.1|4298736_4299024_+	type VII secretion system ESX-1 WXG100 family target ESAT-6	NA	A0A2I6AZH7	Macacine_betaherpesvirus	100.0	1.4e-45
AVK91847.1|4299137_4301138_+	type VII secretion system ESX-1 associated protein EspI	NA	V5UPR8	Mycobacterium_phage	28.8	4.4e-21
>prophage 301
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4309589	4316343	4355637	protease	Mycobacterium_phage(100.0%)	4	NA	NA
AVK92399.1|4309589_4310930_-|protease	type VII secretion system ESX-1 serine protease mycosin MycP1	protease	V5UPA7	Mycobacterium_phage	41.0	8.9e-79
AVK92400.1|4311151_4313011_-	type VII secretion system ESX-2 AAA family ATPase EccA2	NA	V5UQM2	Mycobacterium_phage	29.3	2.5e-47
AVK91854.1|4313080_4314694_-	type VII secretion system ESX-2 subunit EccE2	NA	NA	NA	NA	NA
AVK91855.1|4314690_4316343_-|protease	type VII secretion system ESX-2 serine protease mycosin MycP2	protease	V5UPA7	Mycobacterium_phage	36.6	1.1e-67
>prophage 302
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4324218	4326616	4355637		Mycobacterium_phage(50.0%)	2	NA	NA
AVK91861.1|4324218_4325706_-	type VII secretion system ESX-2 subunit EccB2	NA	V5UN45	Mycobacterium_phage	37.2	4.5e-71
AVK91862.1|4325749_4326616_-	transglycosylase	NA	G4KNQ9	Staphylococcus_phage	43.8	1.8e-08
>prophage 303
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4335400	4336843	4355637	tRNA	Mycobacterium_phage(100.0%)	1	NA	NA
AVK91870.1|4335400_4336843_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A249XS88	Mycobacterium_phage	37.3	7.7e-60
>prophage 304
CP027035	Mycobacterium bovis strain 2002/0476 chromosome, complete genome	4355637	4345496	4351300	4355637		Orpheovirus(25.0%)	7	NA	NA
AVK91877.1|4345496_4346504_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	47.2	4.1e-68
AVK91878.1|4346500_4346851_+	thiol reductase thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	59.8	3.9e-26
AVK91879.1|4346960_4348181_+	hydrolase	NA	Q0H257	Geobacillus_phage	29.2	2.6e-08
AVK91880.1|4348201_4348936_-	acetyltransferase	NA	NA	NA	NA	NA
AVK91881.1|4348975_4349263_-	hypothetical protein	NA	NA	NA	NA	NA
AVK91882.1|4349225_4350260_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
AVK91883.1|4350256_4351300_-	ParA family protein	NA	Q8JL10	Natrialba_phage	32.3	1.4e-23
