assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	1	43213-43310	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	TGAATCGGTGGGCCACAAGCCCTG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA|133aa|up_9|CP023271.1_25127_25526_+,NA|130aa|up_6|CP023271.1_29304_29694_-,NA	NA|133aa|up_9|CP023271.1_25127_25526_+	NA	NA|309aa|up_8|CP023271.1_25671_26598_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|826aa|up_7|CP023271.1_26601_29079_+	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed	NA|130aa|up_6|CP023271.1_29304_29694_-	NA	NA|343aa|up_5|CP023271.1_29799_30828_-	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)	NA|510aa|up_4|CP023271.1_30902_32432_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|213aa|up_3|CP023271.1_34542_35181_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|340aa|up_2|CP023271.1_35167_36187_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|921aa|up_1|CP023271.1_36472_39235_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|1268aa|up_0|CP023271.1_39371_43175_+	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|196aa|down_0|CP023271.1_43341_43929_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|541aa|down_1|CP023271.1_43980_45603_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|328aa|down_2|CP023271.1_45599_46583_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|276aa|down_3|CP023271.1_46740_47568_+	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|335aa|down_4|CP023271.1_47607_48612_+	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|178aa|down_5|CP023271.1_48622_49156_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|428aa|down_6|CP023271.1_49159_50443_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|530aa|down_7|CP023271.1_50460_52050_+	cd09002, GH43_XYL-like, Glycosyl hydrolase family 43, beta-D-xylosidase (uncharacterized)	NA|353aa|down_8|CP023271.1_52088_53147_+	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|283aa|down_9|CP023271.1_53389_54238_+	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	2	114450-114553	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,csa3,WYL,DinG	Unclear	AGTAGATCCACGCCATCCGTGGATG	25	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,csa3,WYL,DinG	NA|115aa|up_8|CP023271.1_103688_104033_-,NA|177aa|up_0|CP023271.1_113220_113751_+,NA|604aa|down_0|CP023271.1_114629_116441_-	NA|354aa|up_9|CP023271.1_102639_103701_+	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair]	NA|115aa|up_8|CP023271.1_103688_104033_-	NA	NA|376aa|up_7|CP023271.1_104250_105378_+	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|360aa|up_6|CP023271.1_105374_106454_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|129aa|up_5|CP023271.1_106683_107070_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|648aa|up_4|CP023271.1_107073_109017_+	pfam05569, Peptidase_M56, BlaR1 peptidase M56	NA|108aa|up_3|CP023271.1_109102_109426_-	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family	NA|340aa|up_2|CP023271.1_109515_110535_-	pfam13482, RNase_H_2, RNase_H superfamily	cas3|830aa|up_1|CP023271.1_110531_113021_-	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	NA|177aa|up_0|CP023271.1_113220_113751_+	NA	NA|604aa|down_0|CP023271.1_114629_116441_-	NA	NA|722aa|down_1|CP023271.1_116437_118603_-	pfam13779, DUF4175, Domain of unknown function (DUF4175)	NA|374aa|down_2|CP023271.1_118599_119721_-	TIGR02226, hypothetical_protein-transmembrane_prediction, N-terminal double-transmembrane domain	NA|299aa|down_3|CP023271.1_119717_120614_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|328aa|down_4|CP023271.1_120621_121605_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|236aa|down_5|CP023271.1_121618_122326_-	pfam13709, DUF4159, Domain of unknown function (DUF4159)	NA|445aa|down_6|CP023271.1_122325_123660_-	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|545aa|down_7|CP023271.1_123681_125316_-	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|528aa|down_8|CP023271.1_125343_126927_-	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|205aa|down_9|CP023271.1_127750_128365_+	pfam06080, DUF938, Protein of unknown function (DUF938)
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	5	527284-527406	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	CGGCTCTGGTAGCTGCCGACCTTGGTCGGCGCTGTG	36	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA|170aa|up_8|CP023271.1_520150_520660_-,NA|51aa|up_3|CP023271.1_524089_524242_+,NA|88aa|down_3|CP023271.1_530830_531094_-	NA|92aa|up_9|CP023271.1_519861_520137_-	pfam13223, DUF4031, Protein of unknown function (DUF4031)	NA|170aa|up_8|CP023271.1_520150_520660_-	NA	NA|313aa|up_7|CP023271.1_520793_521732_-	PRK09041, motB, motility protein MotB	NA|285aa|up_6|CP023271.1_521735_522590_-	PRK09110, PRK09110, flagellar motor stator protein MotA	NA|156aa|up_5|CP023271.1_522691_523159_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|125aa|up_4|CP023271.1_523297_523672_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|51aa|up_3|CP023271.1_524089_524242_+	NA	NA|160aa|up_2|CP023271.1_524299_524779_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_1|CP023271.1_524928_526233_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|357aa|up_0|CP023271.1_526211_527282_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|189aa|down_0|CP023271.1_527491_528058_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|down_1|CP023271.1_528304_530293_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|down_2|CP023271.1_530337_530628_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|down_3|CP023271.1_530830_531094_-	NA	NA|357aa|down_4|CP023271.1_531250_532321_+	pfam05175, MTS, Methyltransferase small domain	NA|234aa|down_5|CP023271.1_532317_533019_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|down_6|CP023271.1_533015_533699_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_7|CP023271.1_533958_535167_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_8|CP023271.1_535166_535682_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|365aa|down_9|CP023271.1_535873_536968_+	PRK02406, PRK02406, DNA polymerase IV; Validated
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	6	1041102-1041209	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	GTGGGTGCCGACCGTTGGTCGGCACGGA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA,NA|143aa|down_4|CP023271.1_1044553_1044982_-	NA|191aa|up_9|CP023271.1_1032457_1033030_-	PRK00884, PRK00884, Maf-like protein; Reviewed	NA|170aa|up_8|CP023271.1_1033144_1033654_+	PRK11193, PRK11193, 23S rRNA accumulation protein YceD	NA|65aa|up_7|CP023271.1_1033761_1033956_+	PRK01110, rpmF, 50S ribosomal protein L32; Validated	NA|326aa|up_6|CP023271.1_1034047_1035025_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|261aa|up_5|CP023271.1_1035098_1035881_+	COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]	NA|315aa|up_4|CP023271.1_1036047_1036992_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|248aa|up_3|CP023271.1_1037074_1037818_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|80aa|up_2|CP023271.1_1037970_1038210_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|421aa|up_1|CP023271.1_1038355_1039618_+	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II	NA|455aa|up_0|CP023271.1_1039710_1041075_+	PRK09070, PRK09070, aminodeoxychorismate synthase component I	NA|354aa|down_0|CP023271.1_1041283_1042345_+	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|222aa|down_1|CP023271.1_1042341_1043007_+	PRK00698, tmk, thymidylate kinase; Validated	NA|319aa|down_2|CP023271.1_1043003_1043960_+	PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated	NA|118aa|down_3|CP023271.1_1043956_1044310_+	COG3215, PilZ, Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|down_4|CP023271.1_1044553_1044982_-	NA	NA|127aa|down_5|CP023271.1_1045542_1045923_+	pfam14552, Tautomerase_2, Tautomerase enzyme	NA|358aa|down_6|CP023271.1_1046005_1047079_-	PHA02561, D, tail protein; Provisional	NA|72aa|down_7|CP023271.1_1047069_1047285_-	COG5004, COG5004, P2-like prophage tail protein X [General function prediction only]	NA|156aa|down_8|CP023271.1_1047268_1047736_-	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|814aa|down_9|CP023271.1_1047738_1050180_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	7	1636189-1636327	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,csa3,WYL,DinG	Unclear	GGTAGGTGCCAGCCTTGGTTGGCACCCTGCGCGCCGACCAAGG	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA,NA|117aa|down_3|CP023271.1_1638489_1638840_-	NA|820aa|up_9|CP023271.1_1620904_1623364_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|162aa|up_8|CP023271.1_1623449_1623935_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|248aa|up_7|CP023271.1_1624064_1624808_+	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA|480aa|up_6|CP023271.1_1624954_1626394_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|653aa|up_5|CP023271.1_1626390_1628349_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|413aa|up_4|CP023271.1_1628345_1629584_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|243aa|up_3|CP023271.1_1629789_1630518_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|464aa|up_2|CP023271.1_1630524_1631916_+	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|1007aa|up_1|CP023271.1_1632129_1635150_+	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	DEDDh|195aa|up_0|CP023271.1_1635496_1636081_-	PRK05168, PRK05168, ribonuclease T; Provisional	NA|174aa|down_0|CP023271.1_1636334_1636856_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|252aa|down_1|CP023271.1_1636879_1637635_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|292aa|down_2|CP023271.1_1637627_1638503_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|117aa|down_3|CP023271.1_1638489_1638840_-	NA	NA|236aa|down_4|CP023271.1_1639020_1639728_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|277aa|down_5|CP023271.1_1639792_1640623_-	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|288aa|down_6|CP023271.1_1640642_1641506_-	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|323aa|down_7|CP023271.1_1641505_1642474_-	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|363aa|down_8|CP023271.1_1642556_1643645_-	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88	NA|340aa|down_9|CP023271.1_1644142_1645162_-	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	8	1847108-1847179	8	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	GTAGATCCACGCCATGCGTGGAT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA,NA|169aa|down_1|CP023271.1_1847868_1848375_-	NA|309aa|up_9|CP023271.1_1834377_1835304_-	COG3258, COG3258, Cytochrome c [Energy production and conversion]	NA|449aa|up_8|CP023271.1_1835300_1836647_-	pfam00034, Cytochrom_C, Cytochrome c	NA|384aa|up_7|CP023271.1_1836830_1837982_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|380aa|up_6|CP023271.1_1837985_1839125_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|232aa|up_5|CP023271.1_1839312_1840008_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|732aa|up_4|CP023271.1_1840165_1842361_+	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|234aa|up_3|CP023271.1_1842415_1843117_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|307aa|up_2|CP023271.1_1843266_1844187_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|309aa|up_1|CP023271.1_1845143_1846070_-	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only]	NA|270aa|up_0|CP023271.1_1846066_1846876_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|223aa|down_0|CP023271.1_1847189_1847858_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|169aa|down_1|CP023271.1_1847868_1848375_-	NA	NA|467aa|down_2|CP023271.1_1848371_1849772_-	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|160aa|down_3|CP023271.1_1849856_1850336_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|187aa|down_4|CP023271.1_1850427_1850988_-	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism]	NA|298aa|down_5|CP023271.1_1851152_1852046_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|172aa|down_6|CP023271.1_1852078_1852594_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|108aa|down_7|CP023271.1_1853082_1853406_-	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|475aa|down_8|CP023271.1_1853592_1855017_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|460aa|down_9|CP023271.1_1855602_1856982_+	PRK11623, pcnB, poly(A) polymerase I; Provisional
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	9	2118624-2118727	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,csa3,WYL,DinG	Type I-A	GCCTGGCGGGGCCGCGGCGGTCGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA|239aa|up_5|CP023271.1_2104970_2105687_+,NA|106aa|up_3|CP023271.1_2106853_2107171_-,NA|217aa|up_2|CP023271.1_2107359_2108010_+,NA|1234aa|up_0|CP023271.1_2114899_2118601_+,NA	NA|257aa|up_9|CP023271.1_2100970_2101741_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|97aa|up_8|CP023271.1_2101748_2102039_-	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|284aa|up_7|CP023271.1_2102226_2103078_-	cd05233, SDR_c, classical (c) SDRs	NA|511aa|up_6|CP023271.1_2103077_2104610_-	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B	NA|239aa|up_5|CP023271.1_2104970_2105687_+	NA	NA|330aa|up_4|CP023271.1_2105683_2106673_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|106aa|up_3|CP023271.1_2106853_2107171_-	NA	NA|217aa|up_2|CP023271.1_2107359_2108010_+	NA	NA|2017aa|up_1|CP023271.1_2108852_2114903_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|1234aa|up_0|CP023271.1_2114899_2118601_+	NA	NA|120aa|down_0|CP023271.1_2118769_2119129_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|376aa|down_1|CP023271.1_2119125_2120253_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|1033aa|down_2|CP023271.1_2120431_2123530_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|275aa|down_3|CP023271.1_2123526_2124351_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|192aa|down_4|CP023271.1_2124350_2124926_+	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|380aa|down_5|CP023271.1_2124922_2126062_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|143aa|down_6|CP023271.1_2126144_2126573_+	pfam04940, BLUF, Sensors of blue-light using FAD	csa3|96aa|down_7|CP023271.1_2126576_2126864_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|146aa|down_8|CP023271.1_2126981_2127419_+	COG2391, COG2391, Predicted transporter component [General function prediction only]	NA|138aa|down_9|CP023271.1_2127415_2127829_+	COG2391, COG2391, Predicted transporter component [General function prediction only]
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	10	2247524-2247636	10	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	GGTAGTGCCGGCCGCTGGCCGGCAGCC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA,NA|532aa|down_1|CP023271.1_2248695_2250291_-,NA|128aa|down_7|CP023271.1_2258204_2258588_-	NA|291aa|up_9|CP023271.1_2231849_2232722_-	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	NA|559aa|up_8|CP023271.1_2232883_2234560_-	PRK08751, PRK08751, long-chain fatty acid--CoA ligase	NA|561aa|up_7|CP023271.1_2234954_2236637_-	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|491aa|up_6|CP023271.1_2236738_2238211_-	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional	NA|197aa|up_5|CP023271.1_2238252_2238843_-	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|918aa|up_4|CP023271.1_2240683_2243437_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|124aa|up_3|CP023271.1_2243694_2244066_-	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|75aa|up_2|CP023271.1_2244256_2244481_+	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|134aa|up_1|CP023271.1_2244487_2244889_+	COG1487, VapC, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|864aa|up_0|CP023271.1_2244930_2247522_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|317aa|down_0|CP023271.1_2247700_2248651_-	PRK10672, PRK10672, endolytic peptidoglycan transglycosylase RlpA	NA|532aa|down_1|CP023271.1_2248695_2250291_-	NA	NA|358aa|down_2|CP023271.1_2250378_2251452_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|199aa|down_3|CP023271.1_2251448_2252045_-	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional	NA|290aa|down_4|CP023271.1_2252041_2252911_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|755aa|down_5|CP023271.1_2252943_2255208_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|792aa|down_6|CP023271.1_2255730_2258106_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|128aa|down_7|CP023271.1_2258204_2258588_-	NA	NA|164aa|down_8|CP023271.1_2258725_2259217_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|258aa|down_9|CP023271.1_2259447_2260221_-	pfam07317, YcgR, Flagellar regulator YcgR
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	11	2712007-2712098	11	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	TGGTAGTGCCGGCCGCTGGCCGGCAACCCA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA|107aa|up_4|CP023271.1_2705879_2706200_-,NA|135aa|up_3|CP023271.1_2706690_2707095_+,NA	NA|306aa|up_9|CP023271.1_2700631_2701549_-	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34)	NA|218aa|up_8|CP023271.1_2701692_2702346_+	pfam11828, DUF3348, Protein of unknown function (DUF3348)	NA|755aa|up_7|CP023271.1_2702356_2704621_+	pfam12128, DUF3584, Protein of unknown function (DUF3584)	NA|220aa|up_6|CP023271.1_2704617_2705277_+	PRK09040, PRK09040, hypothetical protein; Provisional	NA|126aa|up_5|CP023271.1_2705266_2705644_+	pfam11445, DUF2894, Protein of unknown function (DUF2894)	NA|107aa|up_4|CP023271.1_2705879_2706200_-	NA	NA|135aa|up_3|CP023271.1_2706690_2707095_+	NA	NA|773aa|up_2|CP023271.1_2707398_2709717_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|487aa|up_1|CP023271.1_2709739_2711200_+	pfam13449, Phytase-like, Esterase-like activity of phytase	NA|148aa|up_0|CP023271.1_2711423_2711867_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|255aa|down_0|CP023271.1_2712127_2712892_-	TIGR04316, 23-dihydro-23-dihydroxybenzoate_dehydrogenase, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	NA|1293aa|down_1|CP023271.1_2712882_2716761_-	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|86aa|down_2|CP023271.1_2716757_2717015_-	COG3433, COG3433, Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]	NA|211aa|down_3|CP023271.1_2717014_2717647_-	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems	NA|551aa|down_4|CP023271.1_2717646_2719299_-	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|398aa|down_5|CP023271.1_2719295_2720489_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|399aa|down_6|CP023271.1_2720485_2721682_-	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters	NA|104aa|down_7|CP023271.1_2721834_2722146_-	pfam12823, DUF3817, Domain of unknown function (DUF3817)	NA|312aa|down_8|CP023271.1_2722252_2723188_-	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|160aa|down_9|CP023271.1_2723242_2723722_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	12	2989147-2989229	12	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,csa3,WYL,DinG	Unclear	ATCCACGCATGGCGTGGATCTACTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA,NA|72aa|down_6|CP023271.1_2995990_2996206_+,NA|100aa|down_9|CP023271.1_2998166_2998466_+	NA|152aa|up_9|CP023271.1_2974241_2974697_-	pfam16310, DUF4952, Domian of unknown function (DUF4952)	NA|477aa|up_8|CP023271.1_2974774_2976205_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|842aa|up_7|CP023271.1_2976293_2978819_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|905aa|up_6|CP023271.1_2978949_2981664_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|355aa|up_5|CP023271.1_2981897_2982962_-	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed	NA|244aa|up_4|CP023271.1_2983009_2983741_-	pfam11218, DUF3011, Protein of unknown function (DUF3011)	NA|319aa|up_3|CP023271.1_2983875_2984832_-	TIGR00462, genX, EF-P lysine aminoacylase GenX	NA|162aa|up_2|CP023271.1_2984828_2985314_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|822aa|up_1|CP023271.1_2985365_2987831_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|375aa|up_0|CP023271.1_2988017_2989142_+	PRK09105, PRK09105, pyridoxal phosphate-dependent aminotransferase	NA|246aa|down_0|CP023271.1_2989273_2990011_-	PRK04570, PRK04570, cell division protein ZipA; Provisional	NA|1168aa|down_1|CP023271.1_2990057_2993561_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|151aa|down_2|CP023271.1_2993961_2994414_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|77aa|down_3|CP023271.1_2994519_2994750_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|146aa|down_4|CP023271.1_2994761_2995199_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|181aa|down_5|CP023271.1_2995400_2995943_-	pfam03691, UPF0167, Uncharacterized protein family (UPF0167)	NA|72aa|down_6|CP023271.1_2995990_2996206_+	NA	NA|113aa|down_7|CP023271.1_2996269_2996608_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|465aa|down_8|CP023271.1_2996738_2998133_+	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|100aa|down_9|CP023271.1_2998166_2998466_+	NA
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	13	3320858-3320953	13	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	CACCGTGATGCGTGCATCCCCTGCCCATGC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA|56aa|up_9|CP023271.1_3298553_3298721_+,NA	NA|56aa|up_9|CP023271.1_3298553_3298721_+	NA	NA|189aa|up_8|CP023271.1_3298820_3299387_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|285aa|up_7|CP023271.1_3299464_3300319_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|932aa|up_6|CP023271.1_3300534_3303330_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|936aa|up_5|CP023271.1_3303690_3306498_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|935aa|up_4|CP023271.1_3306887_3309692_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|674aa|up_3|CP023271.1_3309883_3311905_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|962aa|up_2|CP023271.1_3312087_3314973_+	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|997aa|up_1|CP023271.1_3315436_3318427_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|702aa|up_0|CP023271.1_3318616_3320722_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|669aa|down_0|CP023271.1_3321003_3323010_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|552aa|down_1|CP023271.1_3323072_3324728_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|161aa|down_2|CP023271.1_3324853_3325336_+	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|529aa|down_3|CP023271.1_3325332_3326919_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|225aa|down_4|CP023271.1_3327027_3327702_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|103aa|down_5|CP023271.1_3327795_3328104_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|307aa|down_6|CP023271.1_3328130_3329051_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|453aa|down_7|CP023271.1_3329534_3330893_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|415aa|down_8|CP023271.1_3331064_3332309_-	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|161aa|down_9|CP023271.1_3332407_3332890_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	14	3487738-3487878	14	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	TGCCAACCTTGGTTGGCACACCTCTGCCGGCCAGCGGCCGGCACTACCGCAA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA|219aa|up_6|CP023271.1_3481438_3482095_-,NA|235aa|down_7|CP023271.1_3500731_3501436_-	NA|709aa|up_9|CP023271.1_3477420_3479547_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|322aa|up_8|CP023271.1_3479781_3480747_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|219aa|up_7|CP023271.1_3480751_3481408_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|219aa|up_6|CP023271.1_3481438_3482095_-	NA	NA|431aa|up_5|CP023271.1_3482239_3483532_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|62aa|up_4|CP023271.1_3483826_3484012_-	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown]	NA|288aa|up_3|CP023271.1_3484079_3484943_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|379aa|up_2|CP023271.1_3484939_3486076_-	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|332aa|up_1|CP023271.1_3486228_3487224_+	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|124aa|up_0|CP023271.1_3487312_3487684_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|297aa|down_0|CP023271.1_3487916_3488807_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional	NA|161aa|down_1|CP023271.1_3489066_3489549_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|194aa|down_2|CP023271.1_3489579_3490161_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|795aa|down_3|CP023271.1_3490435_3492820_-	PRK11240, PRK11240, penicillin-binding protein 1C; Provisional	NA|1636aa|down_4|CP023271.1_3492869_3497777_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|487aa|down_5|CP023271.1_3497952_3499413_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|395aa|down_6|CP023271.1_3499512_3500697_-	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|235aa|down_7|CP023271.1_3500731_3501436_-	NA	NA|873aa|down_8|CP023271.1_3501530_3504149_-	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|386aa|down_9|CP023271.1_3504258_3505416_-	PRK12351, PRK12351, methylcitrate synthase; Provisional
GCA_002966815.1_ASM296681v1	CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	15	3874259-3874522	1	CRT	no		cas3,DEDDh,csa3,WYL,DinG	Orphan	CNAGTAGATCCACGCCATGCGTGGAT	26	0	0	NA	NA	NA	5	5	Orphan	cas3,DEDDh,csa3,WYL,DinG	NA,NA	NA|258aa|up_9|CP023271.1_3860019_3860793_-	PRK12744, PRK12744, SDR family oxidoreductase	NA|303aa|up_8|CP023271.1_3860909_3861818_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|1054aa|up_7|CP023271.1_3862376_3865538_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|379aa|up_6|CP023271.1_3865541_3866678_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|227aa|up_5|CP023271.1_3866801_3867482_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|216aa|up_4|CP023271.1_3867618_3868266_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|453aa|up_3|CP023271.1_3868282_3869641_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|433aa|up_2|CP023271.1_3871283_3872582_-	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|306aa|up_1|CP023271.1_3872642_3873560_+	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA|150aa|up_0|CP023271.1_3873663_3874113_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|444aa|down_0|CP023271.1_3874529_3875861_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|372aa|down_1|CP023271.1_3875841_3876957_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|66aa|down_2|CP023271.1_3876972_3877170_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1115aa|down_3|CP023271.1_3877606_3880951_+	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|252aa|down_4|CP023271.1_3880947_3881703_+	pfam04450, BSP, Peptidase of plants and bacteria	NA|764aa|down_5|CP023271.1_3882303_3884595_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|452aa|down_6|CP023271.1_3884824_3886180_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|390aa|down_7|CP023271.1_3886511_3887681_+	COG3746, OprP, Phosphate-selective porin [Inorganic ion transport and metabolism]	NA|884aa|down_8|CP023271.1_3887749_3890401_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|219aa|down_9|CP023271.1_3890615_3891272_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
