The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	80574	92670	1901558	tRNA	Vibrio_phage(14.29%)	11	NA	NA
AVJ05917.1|80574_82698_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.8	1.6e-260
AVJ05918.1|82815_83676_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
AVJ05919.1|83836_85216_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	6.6e-53
AVJ05920.1|85318_85828_+	cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	32.9	7.2e-13
AVJ05921.1|85882_86689_+	putative DNase	NA	NA	NA	NA	NA
AVJ05922.1|86732_87266_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ05923.1|87324_87648_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.4	2.0e-16
AVJ05924.1|87767_88763_-	D-lactate dehydrogenase, NAD-dependent	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.9	6.4e-66
AVJ05925.1|88775_89885_-	beta-eliminating lyase family protein	NA	A0A141ZJM2	Faustovirus	26.8	1.1e-13
AVJ05926.1|90476_91313_+	cobQ/CobB/MinD/ParA nucleotide binding domain protein	NA	NA	NA	NA	NA
AVJ05927.1|91314_92670_+	replicative DNA helicase	NA	O80281	Escherichia_phage	43.6	3.4e-94
>prophage 2
CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	459491	552737	1901558	integrase,terminase,head,tRNA,tail,portal,holin	Mannheimia_phage(12.24%)	115	454775:454792	548903:548920
454775:454792	attL	AACCCATTTAATCAATTC	NA	NA	NA	NA
AVJ06253.1|459491_460232_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
AVJ06254.1|460316_460661_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06255.1|460866_461397_+	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
AVJ06256.1|461389_461671_+	napD family protein	NA	NA	NA	NA	NA
AVJ06257.1|461731_464191_+	periplasmic nitrate reductase, large subunit	NA	NA	NA	NA	NA
AVJ06258.1|464275_465085_+	mauM/NapG ferredoxin-type family protein	NA	NA	NA	NA	NA
AVJ06259.1|465084_465948_+	ferredoxin-type protein	NA	NA	NA	NA	NA
AVJ06260.1|465953_466397_+	diheme cytochrome c napB	NA	NA	NA	NA	NA
AVJ06261.1|466411_467014_+	periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein	NA	NA	NA	NA	NA
AVJ06262.1|467173_467818_-	adenylate kinase	NA	NA	NA	NA	NA
AVJ06263.1|467902_469141_-	ampG-like permease family protein	NA	NA	NA	NA	NA
AVJ06264.1|469112_469226_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06265.1|469321_470338_-	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	48.9	4.2e-89
AVJ06266.1|470510_471521_-	alpha-2,3-/2,8-sialyltransferase	NA	NA	NA	NA	NA
AVJ06267.1|471919_472642_+	ABC transporter family protein	NA	G3M9Y6	Bacillus_virus	34.5	1.5e-27
AVJ06268.1|472638_473376_+	binding-protein-dependent transport system inner membrane component family protein	NA	G3M9Y4	Bacillus_virus	24.5	2.2e-10
AVJ06269.1|473431_474343_+	putative thiamine biosynthesis protein	NA	NA	NA	NA	NA
AVJ06270.1|474352_475000_+	transcriptional activator, TenA family	NA	NA	NA	NA	NA
AVJ06271.1|475093_475909_-	manganese transport system membrane protein mntB	NA	NA	NA	NA	NA
AVJ06272.1|475901_476750_-	ABC 3 transport family protein	NA	NA	NA	NA	NA
AVJ06273.1|476753_477674_-	ABC transporter family protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.4	1.8e-17
AVJ06274.1|477673_478555_-	periplasmic solute binding family protein	NA	NA	NA	NA	NA
AVJ06275.1|478919_479798_-	beta-lactamase enzyme family protein	NA	NA	NA	NA	NA
AVJ06276.1|479829_479958_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06277.1|480044_481196_+	23S rRNA methyltransferase	NA	NA	NA	NA	NA
AVJ06278.1|481296_481836_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
AVJ06279.1|481907_482819_+	helix-turn-helix domain protein	NA	NA	NA	NA	NA
AVJ06280.1|482827_483934_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AVJ06281.1|483943_485215_+|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SLE3	Klosneuvirus	26.2	9.8e-27
AVJ06282.1|485232_485847_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06283.1|485897_486092_-	feS assembly protein IscX	NA	NA	NA	NA	NA
AVJ06284.1|486091_486433_-	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
AVJ06285.1|486472_488332_-	fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.5	8.0e-110
AVJ06286.1|488350_489037_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06287.1|489087_489612_-	fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
AVJ06288.1|489624_489948_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
AVJ06289.1|490005_490386_-	scaffold protein involved in iron-sulfur cluster assembly	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
AVJ06290.1|490445_491660_-	cysteine desulfurase IscS	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
AVJ06291.1|491726_492179_-	iron-sulfur cluster assembly transcription factor IscR	NA	NA	NA	NA	NA
AVJ06292.1|492231_492957_-|tRNA	tRNA:Cm32/Um32 methyltransferase	tRNA	NA	NA	NA	NA
AVJ06293.1|493508_493622_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06294.1|493605_493893_-|tRNA	putative s-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	F6MIM0	Haemophilus_phage	64.1	5.1e-32
AVJ06295.1|493935_494127_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06296.1|494083_494707_-	putative orf32	NA	Q94MX9	Haemophilus_virus	49.7	4.2e-31
AVJ06297.1|494781_495057_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06298.1|495034_495343_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06299.1|495349_497293_-	phage Tail Collar domain protein	NA	Q94MY0	Haemophilus_virus	53.6	3.2e-125
AVJ06300.1|497303_500954_-	fibronectin type III domain protein	NA	A0A0R6PIC9	Moraxella_phage	37.2	2.9e-140
AVJ06301.1|500957_501425_-|tail	putative prophage LambdaSo, tail assembly protein I	tail	A0A1P8DTG7	Proteus_phage	45.3	1.3e-21
AVJ06302.1|501615_502323_-	nlpC/P60 family protein	NA	A0A1B1IV85	uncultured_Mediterranean_phage	43.2	9.9e-53
AVJ06303.1|502324_502975_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	39.6	2.5e-34
AVJ06304.1|503694_504228_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06305.1|504634_506920_-	hypothetical protein	NA	H6WRV7	Salmonella_phage	31.9	1.7e-29
AVJ06306.1|506954_507248_-|tail	minor tail T family protein	tail	NA	NA	NA	NA
AVJ06307.1|507322_507706_-|tail	bacteriophage lambda minor tail family protein	tail	NA	NA	NA	NA
AVJ06308.1|507711_508212_-|tail	phage tail family protein	tail	O64327	Escherichia_phage	56.1	7.5e-39
AVJ06309.1|508204_508405_-|tail	phage minor tail U family protein	tail	NA	NA	NA	NA
AVJ06310.1|508605_509151_-|tail	prophage minor tail Z family protein	tail	K7PKQ5	Enterobacteria_phage	45.6	4.2e-27
AVJ06311.1|509150_509384_-	ATP-binding sugar transporter from pro-phage family protein	NA	NA	NA	NA	NA
AVJ06312.1|509436_509760_-	hypothetical protein	NA	K7PJY3	Enterobacterial_phage	42.7	9.5e-11
AVJ06313.1|509838_511575_-|head	mu-like prophage major head subunit gpT family protein	head	A0A1B0YZU0	Pseudomonas_phage	55.5	5.8e-163
AVJ06314.1|511816_513340_-|portal	phage portal protein, lambda family	portal	S5MW34	Escherichia_phage	57.9	2.9e-158
AVJ06315.1|513343_513562_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06316.1|513558_515679_-|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	66.7	1.4e-272
AVJ06317.1|515681_516098_-	hypothetical protein	NA	K7PJY2	Enterobacterial_phage	51.4	2.7e-34
AVJ06318.1|516431_516656_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06319.1|517055_517361_-	hypothetical protein	NA	Q7Y5U9	Haemophilus_phage	58.0	7.3e-21
AVJ06320.1|517371_517965_-	chitinase class I family protein	NA	Q7Y5V0	Haemophilus_phage	55.5	1.1e-57
AVJ06321.1|517939_518299_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
AVJ06322.1|518538_519057_-	phage antitermination Q family protein	NA	G8C7V7	Escherichia_phage	34.0	3.4e-18
AVJ06323.1|519057_519603_-	bacteriophage Lambda NinG family protein	NA	D0UIK8	Aggregatibacter_phage	71.9	8.1e-63
AVJ06324.1|519691_520111_-	ninB family protein	NA	Q7Y5V7	Haemophilus_phage	83.3	3.1e-62
AVJ06325.1|520147_520369_-	hypothetical protein	NA	A0A0M3LPX7	Mannheimia_phage	59.7	1.3e-16
AVJ06326.1|520365_521289_-	N-6 DNA Methylase family protein	NA	A0A0M3LQ47	Mannheimia_phage	58.5	2.9e-97
AVJ06327.1|521285_521867_-	DNA N-6-adenine-methyltransferase family protein	NA	A0A0M3LNW2	Mannheimia_phage	55.5	1.1e-49
AVJ06328.1|521863_522505_-	replication P family protein	NA	A0A1I9KFB0	Aeromonas_phage	24.9	8.2e-06
AVJ06329.1|522489_523242_-	helix-turn-helix domain protein	NA	D0UIL5	Aggregatibacter_phage	68.5	3.1e-60
AVJ06330.1|523244_523919_-	phage regulatory Rha family protein	NA	D0UIL6	Aggregatibacter_phage	55.6	5.0e-62
AVJ06331.1|523967_524408_-	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	31.5	1.3e-13
AVJ06332.1|524462_524702_-	putative 8.4 kDa cro protein	NA	A0A2I6PIE5	Escherichia_phage	49.2	7.0e-11
AVJ06333.1|524931_525468_+	helix-turn-helix family protein	NA	A0A0M3LSL8	Mannheimia_phage	52.1	1.1e-40
AVJ06334.1|525528_526266_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06335.1|526262_527078_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06336.1|527705_527876_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06337.1|527890_528112_+	putative orfG, econed on plasmid pRF1	NA	NA	NA	NA	NA
AVJ06338.1|528384_528597_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06339.1|528565_528682_-	hypothetical protein	NA	NA	NA	NA	NA
AVJ06340.1|528740_529064_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06341.1|529060_529354_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06342.1|529366_530287_+	recombinase, phage RecT family protein	NA	A0A0M3LNU3	Mannheimia_phage	71.9	2.8e-116
AVJ06343.1|530261_530912_+	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	70.2	1.0e-83
AVJ06344.1|530911_531346_+	single-stranded DNA-binding family protein	NA	R9TP78	Rhizobium_phage	36.8	7.5e-19
AVJ06345.1|531407_532430_+	putative gp53	NA	A0A0U4B0I3	Pseudomonas_phage	57.3	5.7e-33
AVJ06346.1|532554_533451_+	recombination associated protein	NA	S4TWL4	Salmonella_phage	43.1	1.1e-56
AVJ06347.1|533447_533684_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06348.1|533680_534040_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06349.1|534047_535214_+	DNA (cytosine-5-)-methyltransferase family protein	NA	A0A2I7RFJ9	Vibrio_phage	47.6	8.0e-92
AVJ06350.1|535210_535453_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06351.1|535569_535728_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06352.1|535731_536043_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ06353.1|536392_537418_+|integrase	phage integrase family protein	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
AVJ06354.1|537851_538313_-	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AVJ06355.1|538336_539620_-	tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AVJ06356.1|539661_540669_-	protein TolA	NA	NA	NA	NA	NA
AVJ06357.1|540933_541353_-	tolR	NA	NA	NA	NA	NA
AVJ06358.1|541423_542110_-	protein TolQ	NA	NA	NA	NA	NA
AVJ06359.1|542126_542537_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AVJ06360.1|542862_544785_+	DEAD_2 family protein	NA	A0A127AW80	Bacillus_phage	33.1	2.5e-98
AVJ06361.1|544797_545508_+	putative peptidase	NA	NA	NA	NA	NA
AVJ06362.1|545532_546084_+	outer membrane lipo, Slp family protein	NA	NA	NA	NA	NA
AVJ06363.1|546126_547815_+	fadD	NA	A0A2H4PQU7	Staphylococcus_phage	27.0	3.8e-26
AVJ06364.1|547870_549013_+	ribonuclease D	NA	U3REX2	uncultured_virus	31.4	1.4e-08
548903:548920	attR	GAATTGATTAAATGGGTT	NA	NA	NA	NA
AVJ06365.1|549056_550940_-	acyltransferase family protein	NA	A0A1R3Y5Q6	Salmonella_virus	34.3	9.7e-55
AVJ06366.1|551012_552104_-	50S ribosome-binding GTPase family protein	NA	NA	NA	NA	NA
AVJ06367.1|552152_552737_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 3
CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1200422	1205517	1901558		Escherichia_phage(100.0%)	6	NA	NA
AVJ07003.1|1200422_1200923_-	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.0	3.2e-13
AVJ07004.1|1200922_1201534_-	nitrate reductase delta subunit	NA	A0A077SLS7	Escherichia_phage	32.5	2.3e-21
AVJ07005.1|1201645_1202485_-	dimethyl sulfoxide reductase, chain C	NA	A0A077SK59	Escherichia_phage	31.5	7.2e-18
AVJ07006.1|1202486_1203104_-	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	57.3	8.3e-72
AVJ07007.1|1203114_1203531_-	molybdopterin dinucleotide binding domain protein	NA	A0A077SK27	Escherichia_phage	56.2	3.8e-36
AVJ07008.1|1203696_1205517_-	dimethyl sulfoxide reductase, chain A	NA	A0A077SK27	Escherichia_phage	50.3	2.3e-162
>prophage 4
CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1341675	1350193	1901558		Planktothrix_phage(16.67%)	9	NA	NA
AVJ07142.1|1341675_1342659_-	dppF	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
AVJ07143.1|1342661_1343654_-	dppD	NA	G3M9Y6	Bacillus_virus	30.8	5.7e-14
AVJ07144.1|1343663_1344551_-	dppC	NA	NA	NA	NA	NA
AVJ07145.1|1344565_1345537_-	dppB	NA	NA	NA	NA	NA
AVJ07146.1|1345511_1345628_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ07147.1|1345656_1347837_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	1.8e-116
AVJ07148.1|1348455_1349085_-	4Fe-4S single cluster domain protein	NA	S4TZT1	uncultured_phage	30.3	8.6e-16
AVJ07149.1|1349091_1349517_-	queuosine biosynthesis protein QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	7.8e-21
AVJ07150.1|1349509_1350193_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
>prophage 5
CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1538591	1545270	1901558		Sodalis_phage(16.67%)	10	NA	NA
AVJ07342.1|1538591_1538882_+	integration host factor, alpha subunit	NA	Q2A099	Sodalis_phage	38.2	1.5e-10
AVJ07343.1|1538934_1539420_+	putative lipoprotein	NA	A0A2H5BM69	Streptomyces_phage	39.3	2.3e-16
AVJ07344.1|1539485_1540439_+	WYL domain protein	NA	NA	NA	NA	NA
AVJ07345.1|1540497_1540953_+	5' nucleotidase, deoxy family protein	NA	I6X231	Vibriophage	63.0	3.5e-43
AVJ07346.1|1540936_1541647_+	sir2 family protein	NA	R9TG77	Vibrio_phage	40.1	3.2e-27
AVJ07347.1|1541725_1542220_+	opioid growth factor receptor (OGFr) conserved region family protein	NA	NA	NA	NA	NA
AVJ07348.1|1542233_1542950_+	hypothetical protein	NA	NA	NA	NA	NA
AVJ07349.1|1543007_1544009_-	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	39.8	5.4e-20
AVJ07350.1|1544227_1544428_+	ftsk gamma domain protein	NA	NA	NA	NA	NA
AVJ07351.1|1544424_1545270_+	sir2 family protein	NA	A0A1C3S788	Escherichia_phage	22.9	7.0e-05
>prophage 6
CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1620101	1632086	1901558	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
AVJ07448.1|1620101_1622948_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.5	1.7e-148
AVJ07449.1|1622981_1623254_-	hydrogenase assembly chaperone HypC/HupF	NA	NA	NA	NA	NA
AVJ07450.1|1623315_1624746_-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
AVJ07451.1|1624786_1625788_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.6	4.4e-46
AVJ07452.1|1625840_1626227_-	putative anthranilate phosphoribosyltransferase	NA	NA	NA	NA	NA
AVJ07453.1|1626275_1626863_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
AVJ07454.1|1626875_1628432_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
AVJ07455.1|1628533_1629298_-	glycosyl transferase 2 family protein	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
AVJ07456.1|1629562_1630060_-	putative ferritin-1	NA	NA	NA	NA	NA
AVJ07457.1|1630075_1630564_-	putative ferritin-1	NA	NA	NA	NA	NA
AVJ07458.1|1631072_1632086_+	phosphate ABC transporter, phosphate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
