The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1132205	1151605	2508296	coat,capsid	Stenotrophomonas_phage(54.55%)	29	NA	NA
AVI22657.1|1132205_1132334_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AVI22658.1|1132467_1133769_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	48.3	9.1e-20
AVI23759.1|1133781_1134111_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI22659.1|1134110_1135445_+	Zonular occludens toxin	NA	Q4LAU4	Stenotrophomonas_phage	49.3	7.2e-113
AVI22660.1|1135584_1135833_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22661.1|1135894_1136242_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	44.1	4.0e-07
AVI22662.1|1136828_1137125_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22663.1|1137742_1137925_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22664.1|1138072_1138297_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22665.1|1138450_1139626_+	Replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	45.5	2.5e-77
AVI22666.1|1139671_1139986_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22667.1|1140109_1140361_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22668.1|1140380_1140509_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AVI22669.1|1140642_1141932_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	48.3	9.1e-20
AVI23760.1|1141944_1142274_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI22670.1|1142273_1143608_+	Zonular occludens toxin	NA	Q4LAU4	Stenotrophomonas_phage	49.3	7.2e-113
AVI22671.1|1143747_1144026_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22672.1|1144088_1144436_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	32.4	3.4e-06
AVI22673.1|1144585_1144999_-	hypothetical protein	NA	S0F314	Stenotrophomonas_phage	38.5	3.7e-15
AVI23761.1|1145176_1145476_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22674.1|1145738_1145921_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22675.1|1146068_1146293_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22676.1|1146446_1147622_+	Replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	45.5	2.5e-77
AVI22677.1|1147667_1147982_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22678.1|1148106_1148358_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22679.1|1148377_1148506_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AVI22680.1|1148639_1149929_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	48.3	9.1e-20
AVI23762.1|1149941_1150271_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI22681.1|1150270_1151605_+	Zonular occludens toxin	NA	Q4LAU4	Stenotrophomonas_phage	49.3	5.5e-113
>prophage 2
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1156645	1165178	2508296	coat	Xanthomonas_phage(75.0%)	12	NA	NA
AVI22689.1|1156645_1157983_+	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	48.3	9.4e-20
AVI23764.1|1157995_1158325_+|coat	phage coat protein	coat	NA	NA	NA	NA
AVI22690.1|1158324_1159653_+	Zonular occludens toxin	NA	Q4LAU4	Stenotrophomonas_phage	50.5	1.4e-113
AVI22691.1|1159814_1160054_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22692.1|1160127_1160475_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	44.1	5.2e-07
AVI22693.1|1161615_1161885_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22694.1|1161899_1162259_-	hypothetical protein	NA	A0A1D6ZIU8	Xanthomonas_phage	68.3	2.3e-29
AVI22695.1|1162447_1162861_-	hypothetical protein	NA	A0A1W6DXR3	Xanthomonas_phage	78.6	9.2e-59
AVI22696.1|1162860_1163202_-	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	46.8	1.8e-20
AVI23765.1|1163205_1164702_-	hypothetical protein	NA	A0A1D6ZIU5	Xanthomonas_phage	49.1	1.5e-58
AVI23766.1|1164738_1164963_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22697.1|1164971_1165178_-	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	65.0	2.8e-16
>prophage 3
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1186471	1207244	2508296		Xylella_phage(100.0%)	20	NA	NA
AVI22708.1|1186471_1187974_-	hypothetical protein	NA	C8CLJ8	Xylella_phage	86.7	6.7e-224
AVI22709.1|1187970_1188753_-	hypothetical protein	NA	C8CLJ7	Xylella_phage	88.5	7.4e-126
AVI22710.1|1188800_1189187_+	hypothetical protein	NA	NA	NA	NA	NA
AVI23771.1|1189183_1190488_-	hypothetical protein	NA	C8CLJ3	Xylella_phage	83.4	2.6e-184
AVI22711.1|1192182_1192890_-	hypothetical protein	NA	C8CLJ1	Xylella_phage	70.6	1.2e-77
AVI22712.1|1192920_1193166_-	hypothetical protein	NA	C8CLJ0	Xylella_phage	97.2	1.6e-34
AVI22713.1|1193135_1195064_-	hypothetical protein	NA	C8CLI9	Xylella_phage	95.2	0.0e+00
AVI22714.1|1195060_1195468_-	hypothetical protein	NA	C8CLI8	Xylella_phage	98.5	1.3e-68
AVI22715.1|1195488_1196715_-	hypothetical protein	NA	C8CLI7	Xylella_phage	92.9	1.6e-215
AVI22716.1|1196763_1197618_-	hypothetical protein	NA	C8CLI6	Xylella_phage	78.5	8.4e-107
AVI22717.1|1197619_1199692_-	hypothetical protein	NA	C8CLI5	Xylella_phage	97.5	0.0e+00
AVI22718.1|1199694_1201107_-	DNA packaging protein	NA	C8CLI4	Xylella_phage	98.9	2.1e-280
AVI22719.1|1201018_1201345_-	hypothetical protein	NA	C8CLI3	Xylella_phage	96.3	1.7e-52
AVI22720.1|1201344_1201659_-	hypothetical protein	NA	C8CLI2	Xylella_phage	95.2	2.0e-50
AVI23772.1|1201658_1202201_-	hypothetical protein	NA	C8CLI0	Xylella_phage	87.8	2.4e-75
AVI22721.1|1202197_1202656_-	endolysin	NA	C8CLH9	Xylella_phage	95.4	6.6e-82
AVI23773.1|1202675_1202900_-	hypothetical protein	NA	C8CLH8	Xylella_phage	97.3	5.5e-34
AVI22722.1|1203022_1203745_-	hypothetical protein	NA	C8CLH7	Xylella_phage	91.7	1.3e-116
AVI22723.1|1204015_1206544_-	DNA primase	NA	C8CLH6	Xylella_phage	75.8	0.0e+00
AVI22724.1|1206680_1207244_-	hypothetical protein	NA	C8CLH5	Xylella_phage	69.7	2.3e-68
>prophage 4
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1211053	1222432	2508296	integrase	Xylella_phage(100.0%)	15	1208760:1208773	1225049:1225062
1208760:1208773	attL	ACAACAGCATTCTG	NA	NA	NA	NA
AVI22733.1|1211053_1211569_+	hypothetical protein	NA	C8CLG9	Xylella_phage	36.6	2.9e-09
AVI22734.1|1211565_1211961_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22735.1|1211957_1212425_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22736.1|1212421_1212823_+	hypothetical protein	NA	C8CLG7	Xylella_phage	97.7	3.6e-68
AVI22737.1|1212819_1213014_+	hypothetical protein	NA	C8CLG6	Xylella_phage	89.1	1.4e-25
AVI22738.1|1213045_1213240_+	hypothetical protein	NA	C8CLG5	Xylella_phage	71.4	4.5e-16
AVI22739.1|1213303_1213732_+	hypothetical protein	NA	C8CLG4	Xylella_phage	62.9	4.9e-31
AVI22740.1|1213728_1215006_+	hypothetical protein	NA	C8CLG3	Xylella_phage	87.7	3.1e-214
AVI22741.1|1215005_1215572_+	hypothetical protein	NA	C8CLG2	Xylella_phage	98.4	5.8e-104
AVI23774.1|1216038_1216794_+	antirepressor	NA	C8CLG1	Xylella_phage	91.7	4.8e-130
AVI22742.1|1216795_1218946_+	DNA polymerase	NA	C8CLG0	Xylella_phage	92.3	0.0e+00
AVI22743.1|1218942_1219221_+	hypothetical protein	NA	C8CLF9	Xylella_phage	96.7	1.1e-44
AVI22744.1|1219222_1219669_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22745.1|1219753_1221172_+	hypothetical protein	NA	C8CLF7	Xylella_phage	98.1	1.5e-273
AVI22746.1|1221412_1222432_+|integrase	integrase	integrase	C8CLF4	Xylella_phage	97.1	5.2e-188
1225049:1225062	attR	CAGAATGCTGTTGT	NA	NA	NA	NA
>prophage 5
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1290122	1299209	2508296	tail	Salmonella_phage(27.27%)	12	NA	NA
AVI22796.1|1290122_1290455_-	transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	40.7	1.6e-16
AVI22797.1|1290729_1292721_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22798.1|1292967_1293543_+	hypothetical protein	NA	I6R0L8	Salmonella_phage	40.7	1.3e-18
AVI22799.1|1293542_1293770_+	hypothetical protein	NA	C8CLJ6	Xylella_phage	66.1	2.0e-15
AVI22800.1|1293770_1294934_-|tail	phage tail protein	tail	H9C1B7	Pectobacterium_phage	38.5	9.0e-19
AVI22801.1|1294937_1295498_-	hypothetical protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
AVI22802.1|1295494_1296640_-	hypothetical protein	NA	D0UIH5	Aggregatibacter_phage	49.0	5.3e-96
AVI22803.1|1296742_1297039_+	addiction module antitoxin RelB	NA	A0A141GEX6	Brucella_phage	54.7	9.0e-24
AVI22804.1|1297041_1297335_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	37.9	6.2e-09
AVI22805.1|1297390_1297744_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	51.0	4.1e-23
AVI22806.1|1297740_1298382_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	37.3	2.5e-31
AVI22807.1|1298378_1299209_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	6.8e-77
>prophage 6
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1303717	1325854	2508296	head	Haemophilus_phage(23.81%)	33	NA	NA
AVI22812.1|1303717_1304155_-	hypothetical protein	NA	Q7Y5T4	Haemophilus_phage	63.1	3.6e-45
AVI22813.1|1304164_1305661_-	hypothetical protein	NA	Q7Y5T5	Haemophilus_phage	47.8	1.9e-122
AVI22814.1|1305661_1306165_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22815.1|1306118_1306487_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	42.9	2.8e-19
AVI22816.1|1306473_1306953_-	hypothetical protein	NA	M4SN98	Psychrobacter_phage	28.0	8.6e-08
AVI22817.1|1306949_1307318_-	hypothetical protein	NA	Q7Y5T9	Haemophilus_phage	38.1	1.7e-11
AVI22818.1|1307317_1307671_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22819.1|1307736_1308720_-	hypothetical protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.0	1.1e-49
AVI22820.1|1308729_1309212_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22821.1|1309239_1310430_-	hypothetical protein	NA	H9C194	Pectobacterium_phage	41.7	2.1e-39
AVI22822.1|1310429_1311275_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	32.3	1.6e-28
AVI22823.1|1311347_1311686_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22824.1|1311682_1311964_+	transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	5.2e-13
AVI23786.1|1312012_1313173_-	hypothetical protein	NA	H9C106	Vibrio_phage	36.8	1.7e-54
AVI22825.1|1313397_1314948_-	hypothetical protein	NA	H9C0C7	Vibrio_phage	44.7	5.4e-112
AVI22826.1|1314898_1315297_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22827.1|1315602_1316064_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22828.1|1316053_1316383_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22829.1|1316375_1316873_-	peptidase	NA	A0A2I7RLY1	Vibrio_phage	53.1	2.3e-27
AVI22830.1|1317077_1317416_-	hypothetical protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
AVI22831.1|1317402_1317669_-	hypothetical protein	NA	K4NX81	Burkholderia_phage	40.7	8.1e-08
AVI22832.1|1317856_1318555_-	hypothetical protein	NA	C8CLH7	Xylella_phage	81.7	4.3e-101
AVI23787.1|1318683_1319094_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	42.1	3.2e-11
AVI22833.1|1319099_1320560_-	replicative DNA helicase	NA	O80281	Escherichia_phage	39.7	5.7e-71
AVI22834.1|1320962_1321424_-	hypothetical protein	NA	A0A0F7LAQ7	uncultured_marine_virus	36.9	8.2e-08
AVI22835.1|1321423_1321795_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22836.1|1321796_1322075_-	hypothetical protein	NA	NA	NA	NA	NA
AVI23788.1|1322053_1323166_-	hypothetical protein	NA	C8CLG1	Xylella_phage	59.5	3.3e-111
AVI22837.1|1323198_1323984_-	hypothetical protein	NA	C8CLH5	Xylella_phage	55.9	2.1e-27
AVI22838.1|1324567_1324816_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22839.1|1324812_1325001_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22840.1|1325054_1325273_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22841.1|1325374_1325854_+	hypothetical protein	NA	C8CLH1	Xylella_phage	61.3	5.3e-42
>prophage 7
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1329505	1337823	2508296	integrase	Xylella_phage(45.45%)	12	1330045:1330057	1338425:1338437
AVI22847.1|1329505_1329895_+	hypothetical protein	NA	C8CLG8	Xylella_phage	78.6	1.7e-17
AVI22848.1|1329894_1330311_+	hypothetical protein	NA	C8CLG7	Xylella_phage	73.9	3.0e-49
1330045:1330057	attL	GCCGGTACGTTGT	NA	NA	NA	NA
AVI22849.1|1330307_1330499_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22850.1|1330840_1331032_+	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	2.8e-18
AVI22851.1|1331052_1331397_+	hypothetical protein	NA	U5P4J6	Shigella_phage	45.5	3.0e-15
AVI22852.1|1331436_1332258_+	hypothetical protein	NA	K7ZMK3	Xanthomonas_citri_phage	43.3	5.2e-53
AVI22853.1|1332273_1333191_+	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.7	4.6e-58
AVI22854.1|1333187_1334822_+	hypothetical protein	NA	U6C712	Ralstonia_phage	38.2	6.8e-97
AVI23791.1|1335193_1336024_+	hypothetical protein	NA	Q3LZN7	Bacteriophage	46.7	1.8e-21
AVI22855.1|1336090_1336537_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	52.9	1.1e-33
AVI22856.1|1336555_1336804_+	hypothetical protein	NA	C8CLF5	Xylella_phage	81.7	8.0e-34
AVI22857.1|1336803_1337823_+|integrase	integrase	integrase	C8CLF4	Xylella_phage	87.9	5.4e-169
1338425:1338437	attR	ACAACGTACCGGC	NA	NA	NA	NA
>prophage 8
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1383365	1393944	2508296	tail	Haemophilus_phage(23.08%)	17	NA	NA
AVI22889.1|1383365_1383659_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	37.9	6.2e-09
AVI22890.1|1383714_1384068_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	9.1e-23
AVI22891.1|1384982_1385999_+	peptidase M4	NA	NA	NA	NA	NA
AVI23797.1|1386006_1386360_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22892.1|1386383_1386656_+	transcriptional regulator	NA	NA	NA	NA	NA
AVI22893.1|1386627_1387194_+	hypothetical protein	NA	I6R0L8	Salmonella_phage	33.1	1.4e-17
AVI22894.1|1387193_1387421_+	hypothetical protein	NA	C8CLJ6	Xylella_phage	66.1	2.0e-15
AVI22895.1|1387421_1388585_-|tail	phage tail protein	tail	H9C1B7	Pectobacterium_phage	38.5	9.0e-19
AVI22896.1|1388588_1389149_-	hypothetical protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
AVI22897.1|1389145_1390291_-	hypothetical protein	NA	D0UIH5	Aggregatibacter_phage	49.0	5.3e-96
AVI22898.1|1390393_1390690_+	addiction module antitoxin RelB	NA	A0A141GEX6	Brucella_phage	54.7	9.0e-24
AVI22899.1|1390692_1390986_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	37.9	6.2e-09
AVI22900.1|1391041_1391395_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	51.0	4.1e-23
AVI22901.1|1391391_1392033_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	37.3	2.5e-31
AVI22902.1|1392029_1392860_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	6.8e-77
AVI22903.1|1392856_1393174_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22904.1|1393173_1393944_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	34.1	1.4e-28
>prophage 9
CP016610	Xylella fastidiosa strain Salento-2 chromosome, complete genome	2508296	1404061	1419658	2508296	integrase,head	Vibrio_phage(23.08%)	20	1414405:1414418	1418839:1418852
AVI22908.1|1404061_1404907_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	32.3	1.6e-28
AVI22909.1|1404979_1405318_+	hypothetical protein	NA	NA	NA	NA	NA
AVI22910.1|1405314_1405596_+	transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	5.2e-13
AVI23798.1|1405644_1406805_-	hypothetical protein	NA	H9C106	Vibrio_phage	36.8	1.7e-54
AVI22911.1|1407029_1408580_-	hypothetical protein	NA	H9C0C7	Vibrio_phage	44.7	5.4e-112
AVI22912.1|1408530_1408929_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22913.1|1409234_1409696_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22914.1|1409685_1410015_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22915.1|1410007_1410505_-	peptidase	NA	A0A2I7RLY1	Vibrio_phage	53.1	2.3e-27
AVI22916.1|1410709_1411048_-	hypothetical protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
AVI22917.1|1411034_1411301_-	hypothetical protein	NA	K4NX81	Burkholderia_phage	40.7	8.1e-08
AVI23799.1|1412314_1412725_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	42.1	3.2e-11
AVI22918.1|1412772_1413462_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22919.1|1413442_1414435_-	hypothetical protein	NA	A0A0P0I481	Acinetobacter_phage	44.3	2.9e-18
1414405:1414418	attL	AATCGCCAATGTGG	NA	NA	NA	NA
AVI23800.1|1414431_1414770_-	hypothetical protein	NA	C8CLG1	Xylella_phage	84.8	1.4e-49
AVI23801.1|1414913_1415129_+	hypothetical protein	NA	C8CLF5	Xylella_phage	80.3	1.3e-27
AVI22920.1|1415128_1416148_+|integrase	integrase	integrase	C8CLF4	Xylella_phage	90.3	1.2e-173
AVI23802.1|1416292_1417702_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AVI22921.1|1417806_1418019_-	hypothetical protein	NA	NA	NA	NA	NA
AVI22922.1|1418290_1419658_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.1	1.3e-109
1418839:1418852	attR	AATCGCCAATGTGG	NA	NA	NA	NA
