assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002953435.1_ASM295343v1	CP026491	Escherichia coli strain HS13-1 chromosome, complete genome	1	2962589-2962790	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	NA,NA	NA|252aa|up_9|CP026491.1_2954138_2954894_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|CP026491.1_2954907_2955513_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|CP026491.1_2955509_2957150_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|CP026491.1_2957228_2957498_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|CP026491.1_2957501_2958017_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|CP026491.1_2958019_2958796_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|CP026491.1_2958837_2959620_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|CP026491.1_2959616_2960105_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|CP026491.1_2960271_2961765_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|CP026491.1_2961810_2962512_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|CP026491.1_2962794_2963958_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|CP026491.1_2963967_2966157_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|CP026491.1_2966346_2967678_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|CP026491.1_2967677_2968292_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|CP026491.1_2968330_2969782_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|CP026491.1_2969793_2970339_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|CP026491.1_2975919_2976447_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|CP026491.1_2976428_2977013_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|CP026491.1_2977082_2977352_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|CP026491.1_2977428_2978415_+	PRK11768, PRK11768, serine/threonine protein kinase
GCA_002953435.1_ASM295343v1	CP026491	Escherichia coli strain HS13-1 chromosome, complete genome	2	3243668-3243795	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	Orphan	GCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	NA|89aa|up_9|CP026491.1_3235712_3235979_+,NA|72aa|up_8|CP026491.1_3236016_3236232_-,NA|66aa|up_7|CP026491.1_3236174_3236372_+,NA|62aa|down_1|CP026491.1_3245897_3246083_+,NA|66aa|down_2|CP026491.1_3246060_3246258_+	NA|89aa|up_9|CP026491.1_3235712_3235979_+	NA	NA|72aa|up_8|CP026491.1_3236016_3236232_-	NA	NA|66aa|up_7|CP026491.1_3236174_3236372_+	NA	NA|450aa|up_6|CP026491.1_3236272_3237622_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|550aa|up_5|CP026491.1_3237772_3239422_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|295aa|up_4|CP026491.1_3239457_3240342_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|137aa|up_3|CP026491.1_3240445_3240856_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|230aa|up_2|CP026491.1_3240848_3241538_+	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|550aa|up_1|CP026491.1_3241576_3243226_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|up_0|CP026491.1_3243222_3243537_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|down_0|CP026491.1_3243828_3245787_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|62aa|down_1|CP026491.1_3245897_3246083_+	NA	NA|66aa|down_2|CP026491.1_3246060_3246258_+	NA	NA|479aa|down_3|CP026491.1_3246178_3247615_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|189aa|down_4|CP026491.1_3247659_3248226_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|224aa|down_5|CP026491.1_3248222_3248894_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|319aa|down_6|CP026491.1_3248890_3249847_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|553aa|down_7|CP026491.1_3249926_3251585_+	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|128aa|down_8|CP026491.1_3251577_3251961_+	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|199aa|down_9|CP026491.1_3251957_3252554_+	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional
GCA_002953435.1_ASM295343v1	CP026491	Escherichia coli strain HS13-1 chromosome, complete genome	3	3517360-3517499	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	NA,NA	NA|335aa|up_9|CP026491.1_3505904_3506909_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|CP026491.1_3506919_3507864_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|CP026491.1_3507874_3509095_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|CP026491.1_3509772_3510225_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|CP026491.1_3510270_3511275_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP026491.1_3511436_3511853_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP026491.1_3512029_3512533_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|CP026491.1_3512725_3513913_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP026491.1_3513959_3516815_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP026491.1_3516814_3517258_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP026491.1_3517515_3519027_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|CP026491.1_3519293_3520394_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP026491.1_3520393_3521476_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP026491.1_3521636_3523139_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|CP026491.1_3523216_3524215_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|CP026491.1_3524281_3525601_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|CP026491.1_3525665_3526430_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|CP026491.1_3526453_3527485_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|CP026491.1_3527701_3528265_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|CP026491.1_3528268_3529288_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCA_002953435.1_ASM295343v1	CP026491	Escherichia coli strain HS13-1 chromosome, complete genome	4	4467570-4467700	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	Orphan	AGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAA	36	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	NA|125aa|up_7|CP026491.1_4461822_4462197_-,NA|62aa|up_5|CP026491.1_4463615_4463801_+,NA|80aa|up_4|CP026491.1_4464064_4464304_-,NA|91aa|down_5|CP026491.1_4475396_4475669_+	NA|264aa|up_9|CP026491.1_4459836_4460628_+	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|349aa|up_8|CP026491.1_4460624_4461671_-	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|125aa|up_7|CP026491.1_4461822_4462197_-	NA	NA|428aa|up_6|CP026491.1_4462344_4463628_-	PRK05614, gltA, citrate synthase	NA|62aa|up_5|CP026491.1_4463615_4463801_+	NA	NA|80aa|up_4|CP026491.1_4464064_4464304_-	NA	NA|130aa|up_3|CP026491.1_4464336_4464726_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|CP026491.1_4464719_4465067_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|CP026491.1_4465066_4466833_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|CP026491.1_4466848_4467565_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|CP026491.1_4467925_4470727_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|CP026491.1_4470741_4471959_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|CP026491.1_4472052_4473219_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|CP026491.1_4473218_4474088_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|CP026491.1_4474327_4475443_+	sd00006, TPR, Tetratricopeptide repeat	NA|91aa|down_5|CP026491.1_4475396_4475669_+	NA	NA|523aa|down_6|CP026491.1_4476772_4478341_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_7|CP026491.1_4478356_4479496_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_8|CP026491.1_4479510_4479624_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_9|CP026491.1_4479623_4479917_+	PRK10588, PRK10588, hypothetical protein; Provisional
GCA_002953435.1_ASM295343v1	CP026491	Escherichia coli strain HS13-1 chromosome, complete genome	5	4629342-4629669	2,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	4,5,5	5	TypeI-F	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	NA|69aa|up_8|CP026491.1_4618780_4618987_+,NA	NA|300aa|up_9|CP026491.1_4617720_4618620_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|69aa|up_8|CP026491.1_4618780_4618987_+	NA	NA|232aa|up_7|CP026491.1_4618940_4619636_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|CP026491.1_4620061_4621720_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|331aa|up_5|CP026491.1_4621716_4622709_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|CP026491.1_4622823_4623939_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|CP026491.1_4623935_4625882_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|CP026491.1_4625954_4626179_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|CP026491.1_4626501_4626822_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|CP026491.1_4626852_4629129_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|CP026491.1_4629841_4630825_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|CP026491.1_4630821_4634055_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|CP026491.1_4634384_4635692_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|down_3|CP026491.1_4636622_4637624_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	NA|73aa|down_4|CP026491.1_4639230_4639449_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_5|CP026491.1_4639733_4640438_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_6|CP026491.1_4640479_4642201_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_7|CP026491.1_4642201_4643968_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_8|CP026491.1_4644090_4645056_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_9|CP026491.1_4645599_4646094_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp
GCA_002953435.1_ASM295343v1	CP026491	Escherichia coli strain HS13-1 chromosome, complete genome	6	4638730-4639118	3,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAG	28,28,20	1	1	4638939-4638970	CP026494.1_5913-5944	I-F:I-F:I-F	5,6,6	6	TypeI-F	cas3,DEDDh,DinG,csa3,WYL,RT,cas1,cas3f,cas8f,cas7f	NA,NA	NA|331aa|up_9|CP026491.1_4621716_4622709_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_8|CP026491.1_4622823_4623939_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_7|CP026491.1_4623935_4625882_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_6|CP026491.1_4625954_4626179_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_5|CP026491.1_4626501_4626822_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_4|CP026491.1_4626852_4629129_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_3|CP026491.1_4629841_4630825_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_2|CP026491.1_4630821_4634055_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_1|CP026491.1_4634384_4635692_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|up_0|CP026491.1_4636622_4637624_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	NA|73aa|down_0|CP026491.1_4639230_4639449_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|CP026491.1_4639733_4640438_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|CP026491.1_4640479_4642201_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|CP026491.1_4642201_4643968_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|CP026491.1_4644090_4645056_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|CP026491.1_4645599_4646094_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1348aa|down_6|CP026491.1_4646228_4650272_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|CP026491.1_4650430_4651042_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|CP026491.1_4651052_4652396_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|CP026491.1_4652486_4653779_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
