The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	152259	161825	5121989	integrase,holin	Morganella_phage(57.14%)	11	151126:151139	163772:163785
151126:151139	attL	TTCTTACTTTCATC	NA	NA	NA	NA
AUX95688.1|152259_155022_-	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	57.2	1.6e-295
AUX95689.1|155014_155362_-	hypothetical protein	NA	A0A1B5FPL8	Escherichia_phage	62.2	2.1e-32
AUX95690.1|155371_155998_-	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	39.0	1.4e-26
AUX95691.1|155994_156216_-	hypothetical protein	NA	NA	NA	NA	NA
AUX95692.1|156212_156476_-|holin	nicotinic acetylcholine receptor subunit beta	holin	NA	NA	NA	NA
AUX95693.1|157801_157981_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
AUX95694.1|157973_158783_-	antA/AntB antirepressor family protein	NA	A0A0R6PJV6	Moraxella_phage	45.7	5.1e-29
AUX95695.1|158796_159231_-	hypothetical protein	NA	A0A1W6JPH9	Morganella_phage	52.9	6.8e-28
AUX95696.1|159230_159434_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AUX95697.1|159528_160470_-	hypothetical protein	NA	A0A1W6JPD1	Morganella_phage	48.3	4.2e-06
AUX95698.1|160565_161825_-|integrase	site-specific integrase	integrase	A0A1W6JPG6	Morganella_phage	78.1	3.3e-192
163772:163785	attR	GATGAAAGTAAGAA	NA	NA	NA	NA
>prophage 2
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	708910	732567	5121989	transposase,capsid	Shigella_phage(37.5%)	21	NA	NA
AUX96184.1|708910_709891_-|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	98.5	1.2e-184
AUX96185.1|711105_712143_+|capsid	minor capsid protein E	capsid	K4F6Z8	Cronobacter_phage	24.2	4.1e-07
AUX96186.1|712239_712449_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96187.1|712479_712752_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96188.1|712767_713004_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96189.1|713175_714448_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	2.8e-170
AUX96190.1|716439_717609_+	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA	NA
AUX96191.1|717778_718114_-	hypothetical protein	NA	Q9ZXG3	Shigella_phage	75.0	1.5e-43
AUX96192.1|718352_718499_-	hypothetical protein	NA	Q76S41	Shigella_phage	63.6	3.4e-08
AUX96193.1|719237_719516_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96194.1|721285_721963_-	short chain dehydrogenase	NA	NA	NA	NA	NA
AUX96195.1|722354_723335_+|transposase	IS5 family transposase ISKpn26	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AUY00127.1|723373_723460_-	ABC transporter	NA	NA	NA	NA	NA
AUX96196.1|723435_724059_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96197.1|724506_725289_+	multidrug transporter subunit MdtN	NA	NA	NA	NA	NA
AUX96198.1|725650_726088_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96199.1|726091_726292_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96200.1|726958_728035_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUX96201.1|728576_730100_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.7e-44
AUX96202.1|730393_730825_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96203.1|731208_732567_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	47.5	6.4e-117
>prophage 3
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	1257671	1374188	5121989	head,integrase,tRNA,portal,tail,capsid,terminase,transposase,holin	Cronobacter_phage(48.78%)	96	1318627:1318642	1348001:1348016
AUX96692.1|1257671_1258791_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	1.7e-51
AUX96693.1|1258894_1259590_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96694.1|1261643_1262741_-	glycerol dehydrogenase	NA	NA	NA	NA	NA
AUX96695.1|1263297_1264368_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
AUX96696.1|1264378_1265011_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA	NA
AUX96697.1|1265021_1266440_+	dihydroxyacetone kinase subunit DhaM	NA	NA	NA	NA	NA
AUX96698.1|1266514_1268164_+	glycerone kinase	NA	NA	NA	NA	NA
AUX96699.1|1269906_1271196_-|transposase	ISL3-like element ISPpu12 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	40.4	9.5e-86
AUX96700.1|1271217_1271730_-	signal peptidase II	NA	NA	NA	NA	NA
AUX96701.1|1271733_1272630_-	cation transporter	NA	NA	NA	NA	NA
AUX96702.1|1272725_1273133_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUX96703.1|1273462_1276036_+	type III restriction endonuclease subunit R	NA	NA	NA	NA	NA
AUX96704.1|1276126_1276753_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AUX96705.1|1277024_1277723_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96706.1|1278623_1278836_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
AUX96707.1|1280179_1280941_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96708.1|1281003_1282245_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	47.3	2.4e-102
AUY00145.1|1282861_1284025_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUX96709.1|1284032_1286213_-	type I secretion system permease/ATPase	NA	A0A2H4UU96	Bodo_saltans_virus	28.7	4.9e-18
AUX96710.1|1286209_1287619_-	type I secretion protein TolC	NA	NA	NA	NA	NA
AUX96711.1|1287683_1299158_-	type I secretion C-terminal target domain-containing protein	NA	NA	NA	NA	NA
AUY00146.1|1299774_1300257_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
AUX96712.1|1300406_1300883_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUX96713.1|1300872_1301163_+	RnfH family protein	NA	NA	NA	NA	NA
AUX96714.1|1301327_1301666_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AUX96715.1|1301814_1303476_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AUX96716.1|1303561_1304440_-	NAD(+) kinase	NA	NA	NA	NA	NA
AUY00147.1|1304371_1304566_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
AUX96717.1|1304562_1305153_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AUX96718.1|1305187_1305793_-	cytoplasmic protein	NA	NA	NA	NA	NA
AUX96719.1|1305913_1307155_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AUX96720.1|1307219_1308011_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AUX96721.1|1307956_1308253_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96722.1|1308176_1309538_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUX96723.1|1309790_1310039_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUX96724.1|1310057_1310606_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUX96725.1|1310650_1311418_+|tRNA	tRNA (guanine(37)-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AUX96726.1|1311458_1311806_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUX96727.1|1311962_1313183_-	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
AUX96728.1|1313175_1313694_-	DUF4154 domain-containing protein	NA	NA	NA	NA	NA
AUX96729.1|1314132_1315203_+	phospho-2-dehydro-3-deoxyheptonate aldolase Tyr-sensitive	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
AUX96730.1|1315212_1316334_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AUX96731.1|1316391_1317300_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
AUX96732.1|1317260_1318421_-	prephenate dehydratase	NA	NA	NA	NA	NA
AUY00148.1|1318520_1318568_-	hypothetical protein	NA	NA	NA	NA	NA
1318627:1318642	attL	AAAACGCGCCCGAAGG	NA	NA	NA	NA
AUX96733.1|1318731_1319751_-|integrase	integrase	integrase	A0A0F7LBR0	Escherichia_phage	58.2	1.4e-108
AUX96734.1|1319790_1320096_-	XRE family transcriptional regulator	NA	A0A0M5M1I9	Salmonella_phage	47.5	1.6e-15
AUX96735.1|1320193_1320532_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96736.1|1320557_1320890_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96737.1|1320899_1321469_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	46.3	2.6e-43
AUX96738.1|1321471_1321690_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96739.1|1321728_1324386_+	bifunctional DNA primase/helicase	NA	A0A077K8T2	Ralstonia_phage	47.5	1.2e-244
AUX96740.1|1324413_1324737_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	73.1	1.3e-36
AUX96741.1|1324736_1325756_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	68.5	1.3e-135
AUX96742.1|1325752_1327537_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	69.7	1.8e-247
AUX96743.1|1327594_1328584_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	52.3	2.5e-46
AUX96744.1|1328618_1329647_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	71.6	3.7e-133
AUX96745.1|1329658_1330357_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	3.6e-63
AUX96746.1|1330455_1330908_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	64.7	1.2e-48
AUX96747.1|1330904_1331387_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	48.7	2.3e-37
AUX96748.1|1332083_1333211_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	82.9	8.1e-174
AUX96749.1|1333207_1333663_+	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	71.5	1.7e-58
AUX96750.1|1333675_1333972_+|holin	holin	holin	C7BGD7	Burkholderia_phage	48.2	2.4e-16
AUX96751.1|1333968_1334310_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
AUX96752.1|1334309_1334642_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.0	4.4e-35
AUX96753.1|1334568_1334802_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	83.1	1.7e-30
AUX96754.1|1334779_1335046_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	61.0	2.4e-20
AUX96755.1|1335233_1337201_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.7	1.9e-271
AUX96756.1|1337197_1337527_+	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
AUX96757.1|1337523_1338708_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.6	5.1e-179
AUX96758.1|1338694_1339288_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.4e-89
AUX96759.1|1341311_1341842_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	32.4	4.4e-13
AUX96760.1|1341831_1342557_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	3.8e-68
AUX96761.1|1342528_1343074_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	71.4	3.5e-58
AUX96762.1|1343073_1344777_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	1.7e-223
AUX96763.1|1347501_1347888_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96764.1|1348045_1348384_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
1348001:1348016	attR	AAAACGCGCCCGAAGG	NA	NA	NA	NA
AUX96765.1|1348655_1349393_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUX96766.1|1349524_1350505_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
AUX96767.1|1350501_1351233_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AUX96768.1|1351362_1353936_+	chaperone protein ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
AUX96769.1|1359741_1359972_+	hypothetical protein	NA	NA	NA	NA	NA
AUX96770.1|1359988_1360444_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	3.0e-34
AUX96771.1|1360547_1361849_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.4	1.2e-43
AUX96772.1|1361845_1362169_-	hypothetical protein	NA	NA	NA	NA	NA
AUX96773.1|1362213_1363569_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUX96774.1|1363683_1366344_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
AUX96775.1|1366397_1367078_-	DTW domain-containing protein	NA	NA	NA	NA	NA
AUX96776.1|1367150_1367570_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
AUX96777.1|1367773_1368811_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
AUX96778.1|1368926_1369616_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
AUX96779.1|1369934_1370318_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
AUX96780.1|1370379_1370967_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
AUY00149.1|1371069_1371969_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUX96781.1|1371986_1373321_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
AUX96782.1|1373450_1374188_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 4
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	1610036	1676079	5121989	head,integrase,tRNA,portal,tail,capsid,terminase,lysis,protease	Salmonella_phage(43.33%)	83	1611130:1611146	1651037:1651053
AUX96988.1|1610036_1610975_+|protease	outer membrane protease PgtE	protease	NA	NA	NA	NA
AUX96989.1|1610996_1611227_-	hypothetical protein	NA	Q716F8	Shigella_phage	94.1	1.5e-10
1611130:1611146	attL	AATGGTGTCCCCTGCAG	NA	NA	NA	NA
AUX96990.1|1611219_1611420_-	transcriptional regulator	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
AUX96991.1|1611477_1611645_-	hypothetical protein	NA	K7P728	Enterobacteria_phage	94.5	3.2e-26
AUX96992.1|1612349_1612709_-	Eaf protein	NA	T1SA95	Salmonella_phage	100.0	4.0e-66
AUX96993.1|1612817_1613435_-	Eae-like protein	NA	Q5G8U6	Enterobacteria_phage	64.9	8.9e-66
AUX96994.1|1613431_1613602_-	DUF2737 domain-containing protein	NA	E7C9P7	Salmonella_phage	96.4	1.3e-24
AUX96995.1|1613612_1613906_-	RecBCD nuclease inhibitor	NA	Q76H42	Enterobacteria_phage	93.8	4.8e-46
AUX96996.1|1613952_1614237_-	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	98.9	8.8e-45
AUX96997.1|1614236_1614944_-	recombinase	NA	Q76H40	Enterobacteria_phage	100.0	3.1e-139
AUX96998.1|1615073_1615262_-	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
AUX96999.1|1615242_1615416_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.6e-23
AUX97000.1|1615733_1616012_-	hypothetical protein	NA	C6ZR42	Salmonella_phage	100.0	1.3e-45
AUX97001.1|1616051_1616252_-	restriction endonuclease	NA	A0A0K2FJE6	Enterobacteria_phage	98.5	7.1e-33
AUX97002.1|1616330_1616666_-	hypothetical protein	NA	Q5G8T5	Enterobacteria_phage	86.9	5.0e-47
AUY00157.1|1617236_1617899_-	helix-turn-helix domain-containing protein	NA	A0A0M4QWY1	Salmonella_phage	100.0	1.7e-126
AUX97003.1|1618017_1618233_+	XRE family transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
AUX97004.1|1618341_1618632_+	hypothetical protein	NA	I6RSP4	Salmonella_phage	97.9	4.5e-44
AUX97005.1|1618654_1618927_+	hypothetical protein	NA	G9L679	Escherichia_phage	96.7	3.9e-42
AUX97006.1|1619872_1621249_+	replicative DNA helicase	NA	A0A192Y673	Salmonella_phage	99.8	4.3e-254
AUX97007.1|1621319_1621598_+	hypothetical protein	NA	Q9ZWY1	Enterobacteria_phage	93.4	4.3e-44
AUX97008.1|1621594_1622005_+	recombination protein NinB	NA	A0A0P0ZCW6	Stx2-converting_phage	99.3	7.2e-72
AUX97009.1|1622001_1622154_+	NinE family protein	NA	A5VW90	Enterobacteria_phage	100.0	8.6e-23
AUX97010.1|1622180_1622351_+	NinF family protein	NA	I6R994	Salmonella_phage	87.0	7.4e-23
AUX97011.1|1622343_1622580_+	hypothetical protein	NA	C6ZR59	Salmonella_phage	87.2	1.7e-33
AUX97012.1|1622560_1623031_+	hypothetical protein	NA	C6ZR60	Salmonella_phage	98.1	2.8e-88
AUX97013.1|1623018_1623201_+	hypothetical protein	NA	C6ZR61	Salmonella_phage	96.7	1.6e-23
AUX97014.1|1623197_1623440_+	hypothetical protein	NA	A0A1V0E5R3	Salmonella_phage	93.8	5.8e-37
AUX97015.1|1623597_1624377_+	antitermination protein	NA	Q76H66	Enterobacteria_phage	95.3	1.2e-128
AUX97016.1|1625389_1625662_+	hypothetical protein	NA	A0A1V0E5R8	Salmonella_phage	98.9	2.5e-41
AUX97017.1|1625661_1626159_+	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	98.2	9.9e-92
AUX97018.1|1626155_1626623_+|lysis	lysis protein	lysis	A0A1V0E5Q6	Salmonella_phage	96.1	6.7e-74
AUX97019.1|1626839_1627370_+	hypothetical protein	NA	A0A2H4FQV0	Salmonella_phage	96.0	4.4e-90
AUX97020.1|1627453_1627789_+	hypothetical protein	NA	S4TTH3	Salmonella_phage	65.8	1.0e-39
AUX97021.1|1627924_1628476_+	HNH endonuclease	NA	Q7Y5F9	Xanthomonas_virus	41.5	5.2e-33
AUX97022.1|1629064_1629298_+	hypothetical protein	NA	NA	NA	NA	NA
AUX97023.1|1629285_1629642_+	HNH endonuclease	NA	K7PHK9	Enterobacteria_phage	75.4	7.0e-47
AUX97024.1|1629656_1630220_+	HNH endonuclease	NA	NA	NA	NA	NA
AUX97025.1|1630807_1632544_+|terminase	terminase	terminase	K7PKT2	Enterobacteria_phage	99.0	0.0e+00
AUX97026.1|1632543_1633848_+|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	93.8	2.1e-234
AUX97027.1|1633861_1634710_+	peptidase S14	NA	K7PH05	Enterobacteria_phage	88.2	6.8e-133
AUX97028.1|1634719_1635931_+|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	87.7	3.4e-194
AUX97029.1|1635970_1636159_+	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	77.3	1.2e-18
AUX97030.1|1636158_1636485_+|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	96.3	1.8e-54
AUX97031.1|1636548_1636761_+	hypothetical protein	NA	K7PGR0	Enterobacteria_phage	64.3	5.6e-12
AUX97032.1|1636762_1637095_+|head,tail	head-tail adaptor protein	head,tail	K7PH08	Enterobacteria_phage	85.5	6.9e-49
AUX97033.1|1637087_1637627_+	hypothetical protein	NA	Q9MCV1	Escherichia_phage	84.4	1.2e-79
AUX97034.1|1637623_1637989_+	DUF3168 domain-containing protein	NA	A0A286S1R1	Klebsiella_phage	68.6	7.9e-46
AUX97035.1|1638044_1638536_+|tail	phage tail protein	tail	A0A286S1Q8	Klebsiella_phage	71.2	7.3e-63
AUX97036.1|1638589_1638970_+|tail	phage tail protein	tail	K7PJU9	Enterobacteria_phage	78.2	1.8e-45
AUX97037.1|1639327_1639705_+	hypothetical protein	NA	NA	NA	NA	NA
AUX97038.1|1642261_1642618_+	hypothetical protein	NA	S4TNM6	Salmonella_phage	94.9	3.1e-55
AUX97039.1|1642969_1643563_+	hypothetical protein	NA	S4TSP7	Salmonella_phage	100.0	8.7e-111
AUX97040.1|1643562_1644147_+	hypothetical protein	NA	S4TND4	Salmonella_phage	97.9	1.1e-105
AUX97041.1|1644153_1644552_+	hypothetical protein	NA	S4TR39	Salmonella_phage	100.0	8.8e-75
AUX97042.1|1644551_1647263_+|tail	phage tail protein	tail	S4TTF5	Salmonella_phage	95.7	0.0e+00
AUY00158.1|1647271_1648231_+	hypothetical protein	NA	H6WRW5	Salmonella_phage	98.4	1.5e-181
AUX97043.1|1648241_1649372_+|tail	phage tail protein	tail	S4TSP4	Salmonella_phage	98.1	6.0e-201
AUX97044.1|1649578_1649692_-	virulence protein	NA	S4TND2	Salmonella_phage	83.8	2.1e-10
AUX97045.1|1649719_1650877_-|integrase	integrase	integrase	A5VW56	Enterobacteria_phage	99.2	1.5e-220
AUX97046.1|1651188_1652130_-	hypothetical protein	NA	E7DYY8	Enterobacteria_phage	87.8	4.1e-147
1651037:1651053	attR	AATGGTGTCCCCTGCAG	NA	NA	NA	NA
AUX97047.1|1652418_1653174_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
AUX97048.1|1653234_1654548_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA	NA
AUX97049.1|1654912_1655197_+	DUF406 domain-containing protein	NA	NA	NA	NA	NA
AUX97050.1|1655372_1656683_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
AUX97051.1|1656682_1658830_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
AUX97052.1|1659038_1659524_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
AUX97053.1|1659623_1660175_-	endonuclease SmrB	NA	NA	NA	NA	NA
AUX97054.1|1660340_1661273_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AUX97055.1|1661308_1662394_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.8	5.3e-90
AUX97056.1|1662397_1663222_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
AUX97057.1|1664029_1664578_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
AUX97058.1|1664610_1664886_+	YfcL family protein	NA	NA	NA	NA	NA
AUX97059.1|1667096_1668311_+	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA	NA
AUX97060.1|1668408_1669065_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUX97061.1|1669131_1669650_-	DUF3828 domain-containing protein	NA	NA	NA	NA	NA
AUY00159.1|1669649_1670018_-	hypothetical protein	NA	D5GVH7	Campylobacter_virus	38.6	1.9e-07
AUX97062.1|1670296_1670590_+	hypothetical protein	NA	NA	NA	NA	NA
AUX97063.1|1670769_1671948_+	arabinose transporter	NA	NA	NA	NA	NA
AUX97064.1|1671944_1672946_-	flagella biosynthesis regulator	NA	NA	NA	NA	NA
AUX97065.1|1673049_1674186_+	erythronate-4-phosphate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.1	3.8e-22
AUX97066.1|1674253_1675267_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUX97067.1|1675266_1676079_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
>prophage 5
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	1895508	1904679	5121989	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AUX97257.1|1895508_1896456_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	3.1e-25
AUX97258.1|1896439_1897171_+	ABC transporter permease	NA	NA	NA	NA	NA
AUX97259.1|1897151_1897259_-	hypothetical protein	NA	NA	NA	NA	NA
AUX97260.1|1897318_1898050_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AUX97261.1|1898272_1899958_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AUX97262.1|1899954_1900674_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUX97263.1|1900720_1901188_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AUX97264.1|1901244_1901775_-	hypothetical protein	NA	NA	NA	NA	NA
AUX97265.1|1901946_1902405_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AUX97266.1|1902645_1904679_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 6
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	1985997	1992294	5121989		Enterobacteria_phage(50.0%)	6	NA	NA
AUX97321.1|1985997_1987401_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
AUX97322.1|1987578_1988472_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AUX97323.1|1988848_1989934_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	3.6e-102
AUX97324.1|1989933_1990833_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
AUX97325.1|1990880_1991759_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	64.1	3.9e-107
AUX97326.1|1991763_1992294_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	55.9	6.9e-51
>prophage 7
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	2222458	2277923	5121989	plate,head,integrase,tRNA,tail,capsid,terminase,protease,transposase,holin	Salmonella_phage(56.0%)	68	2223827:2223841	2245367:2245381
AUX97541.1|2222458_2223565_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
2223827:2223841	attL	GCGAATAAAAAGCGC	NA	NA	NA	NA
AUX97542.1|2224090_2224420_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
AUX97543.1|2224416_2225082_-	23S rRNA pseudouridine synthase E	NA	NA	NA	NA	NA
AUX97544.1|2225253_2226504_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
AUX97545.1|2226617_2227760_-|integrase	integrase	integrase	O21929	Phage_21	80.3	8.2e-174
AUX97546.1|2227749_2227986_-	excisionase	NA	NA	NA	NA	NA
AUX97547.1|2228128_2228668_-	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
AUX97548.1|2228804_2229632_-	hypothetical protein	NA	Q8HAA2	Salmonella_phage	98.2	4.6e-150
AUX97549.1|2229689_2230061_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
AUX97550.1|2230158_2230344_+	hypothetical protein	NA	NA	NA	NA	NA
AUX97551.1|2230873_2231569_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
AUX97552.1|2231666_2231891_+	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	98.6	4.2e-34
AUX97553.1|2231919_2232474_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
AUX97554.1|2232470_2233613_+	peptidase	NA	A0A1C9IHV9	Salmonella_phage	87.9	1.5e-183
AUX97555.1|2233609_2233834_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
AUX97556.1|2233830_2234790_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	80.9	1.6e-117
AUX97557.1|2234749_2235274_+	hypothetical protein	NA	Q8HA95	Salmonella_phage	97.7	1.5e-93
AUX97558.1|2235273_2235927_+	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	88.9	3.2e-114
AUX97559.1|2235923_2236313_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	86.0	2.4e-61
AUX97560.1|2236284_2237190_+	DNA-binding protein	NA	A0A192Y6F8	Salmonella_phage	99.0	3.7e-161
AUX97561.1|2238215_2239046_+	antitermination protein	NA	A0A1B5FPA5	Escherichia_phage	43.3	5.0e-56
AUX97562.1|2239152_2240076_-	hypothetical protein	NA	A0A1B5FPA3	Escherichia_phage	56.4	2.1e-42
AUX97563.1|2240226_2240613_+	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	92.2	8.9e-56
AUX97564.1|2240599_2240881_+|holin	phage holin family protein	holin	A0A0U2SHD1	Escherichia_phage	51.1	8.2e-19
AUX97565.1|2240880_2241495_+	endolysin	NA	Q8HA86	Salmonella_phage	93.6	1.1e-108
AUX97566.1|2241491_2242034_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AUX97567.1|2242706_2243051_+	HNH endonuclease	NA	K7P7P6	Enterobacteria_phage	73.9	3.9e-47
AUX97568.1|2243183_2243648_+|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	62.1	1.3e-48
AUX97569.1|2243601_2245344_+|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	44.5	9.1e-140
AUX97570.1|2246660_2247509_+|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	88.6	9.8e-132
2245367:2245381	attR	GCGAATAAAAAGCGC	NA	NA	NA	NA
AUX97571.1|2247518_2248736_+|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	89.4	3.2e-200
AUX97572.1|2248779_2249013_+	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	66.0	2.6e-10
AUX97573.1|2249012_2249336_+|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	57.4	2.2e-31
AUX97574.1|2249347_2249761_+|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	74.8	3.5e-50
AUX97575.1|2249732_2250245_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	86.5	1.8e-80
AUX97576.1|2250807_2250972_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	96.3	8.4e-24
AUX97577.1|2250961_2252458_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.4	3.0e-277
AUX97578.1|2252457_2252814_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
AUX97579.1|2252810_2253137_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
AUX97580.1|2253221_2255150_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.4	0.0e+00
AUX97581.1|2256519_2257578_+|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	99.1	7.3e-201
AUX97582.1|2257577_2258111_+|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	99.4	1.9e-96
AUX97583.1|2258115_2258529_+	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	98.5	4.5e-74
AUX97584.1|2259078_2259600_+|tail	phage tail protein	tail	Q8HAB6	Salmonella_phage	98.8	3.2e-93
AUX97585.1|2259602_2260190_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	99.5	8.3e-114
AUX97586.1|2260176_2261418_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	96.3	1.2e-53
AUX97587.1|2261420_2261951_+|tail	phage tail protein	tail	A0A1S6KZZ1	Salmonella_phage	31.8	1.3e-12
AUX97588.1|2262121_2263255_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	33.8	1.7e-38
AUY00181.1|2263709_2264129_+	translesion error-prone DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	59.1	3.8e-36
AUX97589.1|2264131_2265400_+	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	98.8	1.7e-244
AUX97590.1|2265392_2266064_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	1.8e-80
AUX97591.1|2266317_2266530_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.5e-20
AUX97592.1|2266973_2268098_+	DUF3626 domain-containing protein	NA	NA	NA	NA	NA
AUY00182.1|2268344_2268569_-	hypothetical protein	NA	NA	NA	NA	NA
AUX97593.1|2269229_2269436_-	hypothetical protein	NA	NA	NA	NA	NA
AUX97594.1|2269771_2270752_+|transposase	IS5 family transposase ISKpn26	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AUX97595.1|2270790_2270913_-	ABC transporter	NA	NA	NA	NA	NA
AUX97596.1|2270957_2271746_-	lipoprotein EnvF	NA	NA	NA	NA	NA
AUX97597.1|2272096_2272330_+	hypothetical protein	NA	NA	NA	NA	NA
AUX97598.1|2272234_2272474_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
AUX97599.1|2272654_2273176_-	lipoprotein EnvE	NA	NA	NA	NA	NA
AUX97600.1|2273590_2273803_-	cold-shock protein CspH	NA	NA	NA	NA	NA
AUX97601.1|2273934_2274198_-	virulence protein PagD	NA	NA	NA	NA	NA
AUX97602.1|2274246_2274438_+	hypothetical protein	NA	NA	NA	NA	NA
AUX97603.1|2275004_2275562_+	virulence membrane protein PagC	NA	Q9LA63	Enterobacterial_phage	33.0	1.0e-15
AUX97604.1|2276543_2276744_+	hypothetical protein	NA	NA	NA	NA	NA
AUY00183.1|2276817_2276904_+	ABC transporter	NA	NA	NA	NA	NA
AUX97605.1|2276942_2277923_-|transposase	IS5 family transposase ISKpn26	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
>prophage 8
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	2721527	2729926	5121989	transposase	Escherichia_phage(83.33%)	7	NA	NA
AUY00206.1|2721527_2722664_-	mandelate racemase	NA	Q6A202	Oenococcus_phage	33.2	2.5e-42
AUX98004.1|2723020_2723800_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUX98005.1|2724280_2725261_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	98.5	1.2e-184
AUX98006.1|2725410_2727783_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	47.2	3.2e-196
AUX98007.1|2727793_2728411_+	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	59.6	6.1e-75
AUX98008.1|2728412_2729270_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	32.2	7.6e-23
AUX98009.1|2729311_2729926_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	33.3	1.7e-24
>prophage 9
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	2901036	2956812	5121989	protease,tail,tRNA,integrase	uncultured_Caudovirales_phage(14.29%)	59	2919373:2919389	2952948:2952964
AUX98166.1|2901036_2901918_-|protease	protease HtpX	protease	NA	NA	NA	NA
AUX98167.1|2902110_2904159_-|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
AUX98168.1|2904178_2904865_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AUX98169.1|2904962_2905547_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AUX98170.1|2905588_2906872_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
AUX98171.1|2906834_2909474_+	MCE family protein	NA	NA	NA	NA	NA
AUY00218.1|2909551_2910991_+	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
AUX98172.1|2911105_2911345_+	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
AUX98173.1|2911454_2911646_+	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AUX98174.1|2911664_2912315_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	51.4	8.5e-59
AUX98175.1|2912539_2912704_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98176.1|2912971_2913694_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AUX98177.1|2914378_2914774_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
AUX98178.1|2915102_2915579_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98179.1|2915971_2916391_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUX98180.1|2916520_2916715_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98181.1|2917195_2917336_+	hypothetical protein	NA	NA	NA	NA	NA
2919373:2919389	attL	GGCAGGCTGGTCAGTTG	NA	NA	NA	NA
AUX98182.1|2920686_2920821_-|tail	phage tail protein	tail	NA	NA	NA	NA
AUX98183.1|2920823_2921183_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	44.7	1.5e-20
AUY00219.1|2921120_2921309_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98184.1|2921388_2921508_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98185.1|2921565_2921919_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AUX98186.1|2921935_2922811_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98187.1|2922811_2923186_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AUX98188.1|2923323_2923554_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AUX98189.1|2923661_2924318_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AUX98190.1|2924341_2925040_+	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
AUX98191.1|2925076_2927128_-	oligopeptidase B	NA	NA	NA	NA	NA
AUX98192.1|2927341_2928001_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AUX98193.1|2928094_2928448_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98194.1|2928515_2928806_-	damage-inducible protein YebG	NA	NA	NA	NA	NA
AUX98195.1|2928936_2930115_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
AUX98196.1|2930214_2930856_-	keto-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
AUX98197.1|2930893_2932705_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
AUX98198.1|2932939_2934415_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
AUY00220.1|2934387_2934573_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98199.1|2934756_2935626_+	transcriptional regulator HexR	NA	NA	NA	NA	NA
AUX98200.1|2935749_2937192_+	pyruvate kinase II	NA	NA	NA	NA	NA
AUX98201.1|2937264_2938236_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
AUX98202.1|2938234_2938462_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98203.1|2938352_2939672_-	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
AUY00221.1|2939687_2940647_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUX98204.1|2940710_2941466_+	Mn2+/Zn2+ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
AUX98205.1|2941462_2942248_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AUX98206.1|2942326_2943337_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.9	2.4e-07
AUX98207.1|2943345_2943957_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AUX98208.1|2944315_2944792_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98209.1|2945816_2946338_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
AUX98210.1|2946374_2947115_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AUY00222.1|2947144_2947597_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
AUX98211.1|2947625_2949398_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AUX98212.1|2949722_2950289_+	hydrolase	NA	NA	NA	NA	NA
AUX98213.1|2950611_2951283_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	60.4	5.3e-80
AUX98214.1|2951407_2951593_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98215.1|2951602_2953705_-	type III secretion system effector E3 ubiquitin transferase SspH1	NA	Q9MBL9	Phage_Gifsy-2	48.5	1.0e-28
2952948:2952964	attR	GGCAGGCTGGTCAGTTG	NA	NA	NA	NA
AUX98216.1|2955234_2955360_-	arsenic transporter	NA	NA	NA	NA	NA
AUX98217.1|2955623_2955740_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUX98218.1|2955903_2956131_+	phage virulence factor	NA	NA	NA	NA	NA
AUX98219.1|2956227_2956812_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	81.2	2.4e-84
>prophage 10
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	3084391	3126588	5121989	tail,terminase,lysis,protease,transposase	Escherichia_phage(36.84%)	58	NA	NA
AUX98346.1|3084391_3085072_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	3.4e-82
AUX98347.1|3085457_3085724_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	86.4	1.7e-37
AUX98348.1|3085739_3085931_-	DUF2767 domain-containing protein	NA	A0A0M4R5C3	Salmonella_phage	97.7	5.8e-16
AUY00226.1|3086039_3086474_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98349.1|3086547_3087528_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	98.5	1.2e-184
AUX98350.1|3087565_3087961_-	hypothetical protein	NA	Q6QLL3	Human_immunodeficiency_virus	100.0	4.3e-13
AUX98351.1|3088028_3088622_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	87.4	1.4e-92
AUX98352.1|3088611_3089436_-|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	94.9	9.8e-153
AUX98353.1|3089432_3091142_-|tail	phage tail protein	tail	A0A0U2SAV1	Escherichia_phage	65.6	7.6e-91
AUX98354.1|3091138_3091765_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
AUX98355.1|3091748_3092975_-	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	63.9	3.7e-148
AUX98356.1|3092971_3093304_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98357.1|3093300_3094017_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98358.1|3094013_3095057_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98359.1|3095056_3095332_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98360.1|3095328_3096045_-	hypothetical protein	NA	A0A0U2JGI7	Escherichia_phage	36.5	1.3e-28
AUX98361.1|3096044_3098099_-	hypothetical protein	NA	A0A2R3UAN6	Myoviridae_environmental_samples	35.8	1.3e-20
AUX98362.1|3098222_3098810_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98363.1|3098809_3099247_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98364.1|3099250_3100645_-	hypothetical protein	NA	A0A0U2KD19	Escherichia_phage	37.0	1.2e-70
AUX98365.1|3100650_3101589_-	hypothetical protein	NA	A0A0U2SH76	Escherichia_phage	39.5	1.9e-51
AUY00227.1|3101572_3101983_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98366.1|3102000_3102426_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98367.1|3102438_3102924_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98368.1|3102988_3104020_-	DUF2184 domain-containing protein	NA	A0A0U2QQI2	Escherichia_phage	45.5	1.5e-73
AUX98369.1|3104037_3104910_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98370.1|3104930_3106505_-	NUDIX hydrolase	NA	Q6UJ14	Burkholderia_virus	48.6	1.7e-20
AUX98371.1|3106505_3107381_-	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	45.8	1.2e-55
AUX98372.1|3107352_3108783_-	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	37.9	2.6e-92
AUX98373.1|3108782_3110054_-	hypothetical protein	NA	A0A0U2JTW9	Escherichia_phage	38.3	5.1e-84
AUX98374.1|3110043_3111015_-|terminase	terminase small subunit	terminase	I6NV32	Burkholderia_virus	33.2	2.0e-24
AUX98375.1|3111110_3111326_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98376.1|3111440_3111944_-	hypothetical protein	NA	NA	NA	NA	NA
AUY00228.1|3112272_3112716_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	78.7	4.7e-53
AUX98377.1|3112736_3113225_-	lysozyme	NA	M9P0E5	Enterobacteria_phage	67.5	2.3e-56
AUY00229.1|3113202_3113505_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUX98378.1|3113707_3113896_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98379.1|3114288_3114867_-	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
AUX98380.1|3114863_3115157_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
AUX98381.1|3115153_3115750_-	DUF1367 domain-containing protein	NA	H9C173	Pectobacterium_phage	74.2	6.5e-82
AUX98382.1|3115818_3116010_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98383.1|3116193_3116532_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
AUX98384.1|3116575_3116701_-	methyltransferase	NA	I6S1S6	Salmonella_phage	87.5	4.6e-06
AUX98385.1|3116697_3117300_-	adenine methylase	NA	A0A2R9YJG0	Escherichia_phage	87.8	7.8e-99
AUX98386.1|3117292_3117541_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98387.1|3117544_3118225_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98388.1|3118262_3119651_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	47.3	2.3e-106
AUX98389.1|3119647_3120628_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	79.6	4.0e-44
AUX98390.1|3120630_3120855_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
AUY00230.1|3120877_3121324_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	5.5e-25
AUX98391.1|3121388_3121592_-	hypothetical protein	NA	K7PHK4	Enterobacteria_phage	46.6	4.0e-07
AUX98392.1|3121670_3122072_+	transcriptional regulator	NA	I6PD69	Cronobacter_phage	55.6	2.5e-37
AUX98393.1|3122725_3123049_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98394.1|3123056_3123302_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
AUX98395.1|3123331_3125605_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	35.3	1.1e-108
AUX98396.1|3125601_3126156_+	hypothetical protein	NA	H9C156	Pectobacterium_phage	59.3	9.8e-48
AUX98397.1|3126158_3126341_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98398.1|3126390_3126588_+	hypothetical protein	NA	H9C154	Pectobacterium_phage	58.5	8.3e-10
>prophage 11
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	3234512	3241757	5121989	integrase,protease	Ralstonia_phage(16.67%)	8	3229122:3229136	3240562:3240576
3229122:3229136	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AUX98478.1|3234512_3234890_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
AUX98479.1|3235051_3235249_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98480.1|3235462_3237739_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	8.1e-165
AUX98481.1|3237769_3238090_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AUX98482.1|3238413_3238635_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AUX98483.1|3238589_3238784_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98484.1|3238764_3240711_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
3240562:3240576	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
AUX98485.1|3240707_3241757_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.3e-08
>prophage 12
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	3590187	3599282	5121989	transposase	Salmonella_phage(42.86%)	11	NA	NA
AUX98784.1|3590187_3591513_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.3	7.9e-104
AUX98785.1|3591728_3592583_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUX98786.1|3592633_3592813_-	cation transporter	NA	NA	NA	NA	NA
AUY00255.1|3592921_3593251_+	ATP-binding protein	NA	NA	NA	NA	NA
AUX98787.1|3593450_3593696_+	copper-binding protein	NA	NA	NA	NA	NA
AUX98788.1|3594119_3594482_+	GtrA family protein	NA	I1TED9	Salmonella_phage	97.5	3.3e-60
AUX98789.1|3594478_3595399_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	94.7	7.3e-165
AUX98790.1|3595400_3596858_+	hypothetical protein	NA	A0A192Y7W8	Salmonella_phage	59.6	1.4e-154
AUX98791.1|3597038_3598019_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	98.5	1.2e-184
AUX98792.1|3598056_3598209_-	sugar kinase	NA	Q6QLL3	Human_immunodeficiency_virus	100.0	1.2e-13
AUX98793.1|3598227_3599282_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	38.8	4.5e-41
>prophage 13
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	3786029	3896739	5121989	head,portal,tail,terminase,protease,transposase,holin	Salmonella_phage(29.41%)	103	NA	NA
AUX98962.1|3786029_3787010_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.8	5.2e-185
AUX98963.1|3787334_3788309_+	porphobilinogen synthase	NA	NA	NA	NA	NA
AUX98964.1|3788412_3790299_-	propionate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	29.6	6.3e-54
AUX98965.1|3790339_3791791_-	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUX98966.1|3791830_3793000_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
AUX98967.1|3793110_3793998_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
AUX98968.1|3794263_3795889_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA	NA
AUX98969.1|3796024_3796300_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AUX98970.1|3796531_3797164_+	transporter	NA	NA	NA	NA	NA
AUX98971.1|3799456_3800461_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUX98972.1|3800666_3800798_-	DUF2474 domain-containing protein	NA	NA	NA	NA	NA
AUX98973.1|3800797_3801808_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUX98974.1|3801804_3803208_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUX98975.1|3803324_3803426_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98976.1|3803701_3806674_-	type III restriction-modification system endonuclease	NA	Q71TG1	Escherichia_phage	26.2	2.1e-83
AUX98977.1|3806683_3808642_-	site-specific DNA-methyltransferase	NA	Q1MVP0	Enterobacteria_phage	32.6	3.3e-82
AUX98978.1|3808830_3810084_-	MFS transporter	NA	NA	NA	NA	NA
AUX98979.1|3810375_3810570_-	copper chaperone	NA	NA	NA	NA	NA
AUX98980.1|3810647_3811112_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUX98981.1|3818038_3819550_+	multidrug transporter	NA	NA	NA	NA	NA
AUX98982.1|3819617_3819977_-	DUF4156 domain-containing protein	NA	NA	NA	NA	NA
AUX98983.1|3820034_3820259_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98984.1|3820269_3820911_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUX98985.1|3821054_3821579_-	outer membrane protein	NA	B0FEG7	Escherichia_phage	29.2	1.3e-09
AUX98986.1|3821980_3822469_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98987.1|3822441_3823185_-	response regulator	NA	NA	NA	NA	NA
AUX98988.1|3823284_3824859_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUX98989.1|3825160_3825364_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98990.1|3825633_3826398_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98991.1|3826713_3826929_+	hypothetical protein	NA	NA	NA	NA	NA
AUX98992.1|3827031_3827568_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
AUX98993.1|3828160_3829141_+|transposase	IS5 family transposase ISKpn26	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AUY00263.1|3829179_3829326_-	ABC transporter	NA	NA	NA	NA	NA
AUX98994.1|3832139_3833465_+	fimbrial protein	NA	NA	NA	NA	NA
AUX98995.1|3833430_3834189_+	fimbrial assembly protein	NA	NA	NA	NA	NA
AUX98996.1|3834236_3834635_-	hypothetical protein	NA	NA	NA	NA	NA
AUX98997.1|3835001_3835358_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	84.3	4.4e-49
AUX98998.1|3835566_3836769_+	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	99.8	1.4e-208
AUY00264.1|3836983_3837142_+	virulence protein	NA	S4TND2	Salmonella_phage	100.0	5.8e-22
AUX98999.1|3837210_3838341_-|tail	phage tail protein	tail	S4TSP4	Salmonella_phage	99.7	4.9e-203
AUX99000.1|3838351_3839311_-	hypothetical protein	NA	H6WRW5	Salmonella_phage	100.0	9.6e-184
AUX99001.1|3839319_3842040_-	DUF1983 domain-containing protein	NA	S4TTF5	Salmonella_phage	100.0	0.0e+00
AUX99002.1|3842039_3842438_-	hypothetical protein	NA	S4TR39	Salmonella_phage	100.0	8.8e-75
AUX99003.1|3842444_3843029_-	hypothetical protein	NA	S4TND4	Salmonella_phage	100.0	1.5e-107
AUX99004.1|3843028_3843622_-	hypothetical protein	NA	S4TSP7	Salmonella_phage	100.0	8.7e-111
AUX99005.1|3844038_3844350_-	hypothetical protein	NA	S4TNM6	Salmonella_phage	80.2	1.7e-36
AUX99006.1|3844395_3847686_-|tail	phage tail tape measure protein	tail	K7PKG1	Enterobacteria_phage	66.5	0.0e+00
AUY00265.1|3848227_3848506_-	DUF4035 domain-containing protein	NA	S4TND7	Salmonella_phage	100.0	1.9e-44
AUX99007.1|3848529_3848901_-|tail	phage tail protein	tail	S4TSQ0	Salmonella_phage	92.6	3.4e-60
AUX99008.1|3848928_3849633_-|tail	phage tail protein	tail	K7PHL2	Enterobacterial_phage	74.4	9.7e-93
AUX99009.1|3849690_3850038_-	DUF3168 domain-containing protein	NA	S4TTG3	Salmonella_phage	77.0	3.1e-44
AUX99010.1|3850034_3850484_-	hypothetical protein	NA	S4TR46	Salmonella_phage	95.3	2.1e-72
AUX99011.1|3850480_3850819_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	70.5	6.6e-39
AUX99012.1|3850828_3851155_-|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	85.2	5.2e-49
AUX99013.1|3851154_3851370_-	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	66.0	2.4e-10
AUX99014.1|3852639_3853488_-|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	87.9	1.7e-131
AUX99015.1|3853501_3854806_-|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	85.9	6.2e-218
AUX99016.1|3854805_3856548_-|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	45.2	9.7e-142
AUX99017.1|3856501_3856966_-|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	62.7	7.4e-49
AUX99018.1|3857098_3857443_-	HNH endonuclease	NA	K7P7P6	Enterobacteria_phage	73.9	3.9e-47
AUX99019.1|3857510_3857888_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	66.1	1.2e-41
AUX99020.1|3857930_3858470_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	46.6	3.7e-07
AUX99021.1|3858466_3859093_-	endolysin	NA	Q858F0	Salmonella_phage	80.2	7.8e-94
AUX99022.1|3859095_3859443_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	9.8e-46
AUX99023.1|3859922_3860357_-	antitermination protein Q	NA	B6SD39	Bacteriophage	58.9	4.5e-40
AUX99024.1|3860661_3862830_-	replication protein	NA	B6SCY1	Bacteriophage	72.4	1.6e-173
AUX99025.1|3862833_3863046_-	XRE family transcriptional regulator	NA	A0A0R6PHL1	Moraxella_phage	42.9	6.0e-06
AUX99026.1|3863166_3863790_+	DNA-binding protein	NA	A0A1I9KG86	Aeromonas_phage	45.3	6.7e-37
AUX99027.1|3864333_3864858_+	hypothetical protein	NA	C9EH97	Sodalis_phage	48.8	8.4e-41
AUX99028.1|3865115_3866018_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99029.1|3866020_3867322_+	DUF2800 domain-containing protein	NA	B6SCX9	Bacteriophage	56.3	1.0e-132
AUX99030.1|3867336_3867885_+	DUF2815 domain-containing protein	NA	Q775A5	Bordetella_phage	65.4	7.1e-67
AUX99031.1|3867925_3868423_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99032.1|3868472_3870536_+	DNA polymerase	NA	Q775A3	Bordetella_phage	68.1	1.6e-276
AUX99033.1|3871054_3871276_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99034.1|3871265_3871508_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99035.1|3871491_3871761_+	VRR-NUC domain-containing protein	NA	B6SD64	Bacteriophage	65.9	3.9e-26
AUX99036.1|3871763_3872477_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99037.1|3872515_3873907_+	ATP-dependent helicase	NA	Q3LZN8	Bacteriophage	73.0	1.0e-210
AUX99038.1|3873903_3874092_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AUX99039.1|3874098_3874566_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99040.1|3874566_3875739_-	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	49.0	5.0e-110
AUX99041.1|3876083_3877334_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	1.4e-97
AUX99042.1|3877345_3878449_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
AUX99043.1|3878731_3879784_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	2.6e-113
AUX99044.1|3879834_3880236_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
AUX99045.1|3880293_3881538_-	esterase	NA	NA	NA	NA	NA
AUX99046.1|3881626_3882085_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
AUX99047.1|3882332_3883790_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
AUX99048.1|3883945_3884560_-	peptide chain release factor H	NA	NA	NA	NA	NA
AUX99049.1|3884556_3885696_-	RNA ligase RtcB family protein	NA	A0A222ZM82	Mycobacterium_phage	30.6	1.7e-30
AUX99050.1|3885914_3886970_-	DNA polymerase IV	NA	NA	NA	NA	NA
AUX99051.1|3887219_3887960_+	transpeptidase	NA	NA	NA	NA	NA
AUX99052.1|3887930_3888698_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
AUX99053.1|3888909_3889488_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	30.8	1.3e-13
AUX99054.1|3889727_3892172_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUX99055.1|3892280_3893048_+	amidohydrolase	NA	NA	NA	NA	NA
AUX99056.1|3893357_3893765_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99057.1|3894089_3894809_+	adhesin/invasin protein PagN	NA	NA	NA	NA	NA
AUX99058.1|3894812_3895001_-	hypothetical protein	NA	NA	NA	NA	NA
AUY00266.1|3895113_3895308_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99059.1|3895568_3895760_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99060.1|3895758_3896739_+|transposase	IS5-like element ISKpn26 family transposase	transposase	Q38213	Escherichia_phage	98.5	1.2e-184
>prophage 14
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	4370899	4406797	5121989	tail,tRNA,transposase	Escherichia_phage(33.33%)	26	NA	NA
AUX99453.1|4370899_4371913_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUX99454.1|4371913_4372687_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUX99455.1|4372721_4372934_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99456.1|4373706_4374168_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AUX99457.1|4374372_4375284_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99458.1|4375559_4376555_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99459.1|4376810_4377416_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
AUX99460.1|4377902_4378160_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99461.1|4378164_4379796_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUX99462.1|4379855_4380047_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99463.1|4380345_4381071_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AUX99464.1|4381684_4382665_+|transposase	IS5 family transposase ISKpn26	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AUY00289.1|4382703_4382841_-	ABC transporter	NA	NA	NA	NA	NA
AUX99465.1|4382849_4383857_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99466.1|4384753_4386346_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUX99467.1|4387491_4387686_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99468.1|4388654_4389635_-|transposase	IS5 family transposase ISKpn26	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AUY00290.1|4389660_4392495_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99469.1|4392507_4398828_+	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	22.1	1.8e-44
AUX99470.1|4399327_4400344_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUX99471.1|4401516_4401825_-	cytotoxin	NA	NA	NA	NA	NA
AUX99472.1|4401827_4402067_-	antitoxin	NA	NA	NA	NA	NA
AUX99473.1|4402175_4402424_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AUX99474.1|4403725_4406359_-|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	31.3	7.6e-106
AUY00291.1|4406351_4406471_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
AUX99475.1|4406485_4406797_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	66.0	2.4e-27
>prophage 15
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	4589512	4598222	5121989		uncultured_Caudovirales_phage(57.14%)	10	NA	NA
AUX99649.1|4589512_4590547_-	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	58.2	8.9e-111
AUY00302.1|4590596_4591871_-	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	60.0	4.4e-144
AUX99650.1|4591912_4592353_-	peptidase	NA	A0A1W6JNS2	Morganella_phage	53.3	3.6e-29
AUX99651.1|4592546_4593446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUX99652.1|4593544_4594072_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	37.1	7.2e-16
AUX99653.1|4594068_4595301_+	MFS transporter	NA	NA	NA	NA	NA
AUX99654.1|4595349_4595685_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUY00303.1|4595690_4596404_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	71.7	1.2e-95
AUX99655.1|4596460_4596889_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.0	6.2e-50
AUX99656.1|4596938_4598222_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	75.1	2.9e-175
>prophage 16
CP026379	Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome	5121989	4734760	4812668	5121989	plate,tail,transposase,tRNA	Burkholderia_phage(29.63%)	72	NA	NA
AUX99769.1|4734760_4735741_+|transposase	IS5 family transposase ISKpn26	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
AUY00312.1|4735779_4735866_-	ABC transporter	NA	NA	NA	NA	NA
AUX99770.1|4748087_4749365_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUX99771.1|4749361_4750288_-	TolC family protein	NA	NA	NA	NA	NA
AUX99772.1|4750302_4750680_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99773.1|4750669_4752058_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99774.1|4752054_4752687_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99775.1|4753519_4753711_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99776.1|4753726_4754257_-	ssDNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	88.9	3.9e-54
AUX99777.1|4754414_4754540_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99778.1|4754504_4757330_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	0.0e+00
AUX99779.1|4757461_4757917_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99780.1|4757903_4758242_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99781.1|4758242_4758599_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99782.1|4758601_4759018_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
AUX99783.1|4759146_4759860_-	acid phosphatase AphA	NA	NA	NA	NA	NA
AUX99784.1|4759906_4760137_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99785.1|4760046_4761240_-	aromatic amino acid transaminase	NA	NA	NA	NA	NA
AUX99786.1|4761425_4762505_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	29.1	1.5e-28
AUX99787.1|4762536_4763952_-	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	78.4	7.0e-199
AUX99788.1|4764016_4765000_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AUX99789.1|4765174_4765417_-	envelope stress response protein PspG	NA	NA	NA	NA	NA
AUX99790.1|4765584_4766583_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AUX99791.1|4766670_4767981_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUX99792.1|4768227_4768743_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
AUX99793.1|4768841_4769051_-	CsbD family protein	NA	NA	NA	NA	NA
AUY00313.1|4769072_4769186_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99794.1|4769182_4770508_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AUX99795.1|4770686_4771295_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
AUX99796.1|4771403_4771772_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AUX99797.1|4771942_4774363_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
AUX99798.1|4774461_4775334_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AUX99799.1|4775347_4775845_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AUX99800.1|4776025_4776943_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AUX99801.1|4777106_4778465_-	maltoporin	NA	NA	NA	NA	NA
AUX99802.1|4778552_4779662_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
AUX99803.1|4780023_4781214_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
AUX99804.1|4781345_4782890_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AUX99805.1|4782904_4783795_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AUX99806.1|4783960_4784371_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
AUX99807.1|4784513_4786610_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AUX99808.1|4786609_4787347_-	hypothetical protein	NA	NA	NA	NA	NA
AUX99809.1|4787343_4787982_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
AUX99810.1|4788045_4788288_-	outer membrane protein	NA	NA	NA	NA	NA
AUX99811.1|4788732_4790382_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AUX99812.1|4790770_4792120_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
AUX99813.1|4792247_4792595_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	52.6	7.5e-22
AUX99814.1|4793170_4793458_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	5.1e-16
AUX99815.1|4793460_4794066_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
AUX99816.1|4794078_4794393_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AUX99817.1|4794551_4795007_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99818.1|4795003_4795201_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AUX99819.1|4795190_4796618_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.8e-194
AUX99820.1|4796617_4797142_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AUX99821.1|4797193_4797511_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AUX99822.1|4797470_4797599_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AUX99823.1|4797695_4800050_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.5	1.2e-65
AUX99824.1|4800049_4801003_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	3.9e-36
AUY00314.1|4801002_4801212_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AUX99825.1|4801199_4802243_+	phage protein D	NA	A4JWL3	Burkholderia_virus	45.9	5.0e-77
AUX99826.1|4802252_4802975_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
AUX99827.1|4802983_4803226_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99828.1|4803301_4803664_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.0	4.0e-42
AUX99829.1|4803660_4804590_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	84.1	6.7e-150
AUX99830.1|4804589_4806137_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.5e-48
AUX99831.1|4806300_4806660_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AUX99832.1|4806650_4807766_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.0	6.9e-101
AUX99833.1|4807758_4808391_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
AUX99834.1|4808393_4810139_+|tail	phage tail protein	tail	A0A0M3ULH6	Salmonella_phage	40.2	1.4e-52
AUX99835.1|4810143_4810749_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
AUX99836.1|4810745_4811201_+	hypothetical protein	NA	NA	NA	NA	NA
AUX99837.1|4811939_4812668_+	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
