The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025509	Rhizobium leguminosarum bv. viciae strain UPM791 chromosome, complete genome	4760731	1687166	1700605	4760731	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
AVC49584.1|1687166_1688237_+	glycosyl hydrolase family 3 N terminal domain protein	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	1.7e-24
AVC49585.1|1688255_1689113_+	scpA/B family protein	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.5	3.3e-34
AVC49586.1|1689109_1689826_+	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.0	2.6e-40
AVC49587.1|1690024_1690201_+	twin arginine-targeting translocase, TatA/E family protein	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	76.9	4.1e-08
AVC49588.1|1690252_1690864_+	twin arginine-targeting protein translocase TatB	NA	NA	NA	NA	NA
AVC49589.1|1690860_1691688_+	twin arginine-targeting protein translocase TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.5	5.2e-53
AVC49590.1|1691887_1693171_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	1.8e-97
AVC49591.1|1693175_1693949_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	2.4e-23
AVC49592.1|1693945_1694599_+	methyltransferase small domain protein	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.1	1.5e-15
AVC49593.1|1694839_1696444_+	peptidase M23 family protein	NA	I3PV24	Clostridium_phage	29.2	5.1e-12
AVC49594.1|1696592_1697465_-	AAA ATPase domain protein	NA	NA	NA	NA	NA
AVC49595.1|1697671_1698019_+	preprotein translocase, YajC subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	2.4e-12
AVC49596.1|1698064_1700605_+	protein-export membrane protein SecD	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.2	8.2e-57
>prophage 2
CP025509	Rhizobium leguminosarum bv. viciae strain UPM791 chromosome, complete genome	4760731	1930666	1940932	4760731		uncultured_Mediterranean_phage(83.33%)	10	NA	NA
AVC49824.1|1930666_1933588_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.1	0.0e+00
AVC49825.1|1933883_1934381_+	single-stranded DNA-binding family protein	NA	A0A0U2C0X4	Paracoccus_phage	71.4	4.2e-42
AVC49826.1|1934481_1935129_-	lysE type translocator family protein	NA	NA	NA	NA	NA
AVC49827.1|1935428_1938203_+	DNA gyrase, A subunit	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	1.9e-75
AVC49828.1|1938386_1938521_-	putative membrane protein	NA	NA	NA	NA	NA
AVC49829.1|1938557_1938671_-	hypothetical protein	NA	NA	NA	NA	NA
AVC49830.1|1938855_1939131_-	hypothetical protein	NA	NA	NA	NA	NA
AVC49831.1|1939267_1939762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	6.1e-25
AVC49832.1|1939820_1940393_+	cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	52.0	3.7e-42
AVC49833.1|1940422_1940932_+	cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	4.2e-45
>prophage 3
CP025509	Rhizobium leguminosarum bv. viciae strain UPM791 chromosome, complete genome	4760731	2923460	2937263	4760731		Vibrio_phage(25.0%)	11	NA	NA
AVC50805.1|2923460_2925518_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.7e-36
AVC50806.1|2926089_2926413_-	hypothetical protein	NA	NA	NA	NA	NA
AVC50807.1|2926446_2927484_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	66.7	9.2e-15
AVC50808.1|2927746_2928934_-	2-amino-3-ketobutyrate coenzyme A ligase	NA	D2TEZ5	Emiliania_huxleyi_virus	28.3	2.6e-37
AVC50809.1|2929098_2929827_-	methyltransferase domain protein	NA	A0A1X9I6N4	Streptococcus_phage	42.0	1.2e-48
AVC50810.1|2929875_2931756_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	34.6	3.9e-72
AVC50811.1|2931755_2933765_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	4.9e-89
AVC50812.1|2933774_2933987_+	hypothetical protein	NA	NA	NA	NA	NA
AVC50813.1|2934434_2935325_+	hypothetical protein	NA	NA	NA	NA	NA
AVC50814.1|2935328_2935784_-	yqey-like family protein	NA	A0A292GL36	Xanthomonas_phage	38.7	6.9e-15
AVC50815.1|2936051_2937263_+	carbamoyl-phosphate synthase, small subunit	NA	R4TGJ8	Halovirus	33.2	1.1e-40
>prophage 4
CP025509	Rhizobium leguminosarum bv. viciae strain UPM791 chromosome, complete genome	4760731	3791623	3801556	4760731		Mycobacterium_phage(25.0%)	9	NA	NA
AVC51597.1|3791623_3792334_+	queuosine biosynthesis protein QueC	NA	A0A2P1JXV3	Rhodococcus_phage	48.7	2.3e-49
AVC51598.1|3792333_3792690_+	queuosine biosynthesis protein QueD	NA	NA	NA	NA	NA
AVC51599.1|3792692_3793415_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.6	2.9e-39
AVC51600.1|3793419_3794640_-	adenylate and Guanylate cyclase catalytic domain protein	NA	M1HLN3	Pelagibacter_phage	29.7	5.4e-14
AVC51601.1|3794744_3795752_-	ribonucleotide reductase, small chain family protein	NA	R4TBI6	Mycobacterium_phage	75.1	7.5e-139
AVC51602.1|3795806_3798011_-	ribonucleoside-diphosphate reductase, alpha subunit	NA	A8E2R1	Enterococcus_phage	51.4	5.6e-211
AVC51603.1|3797989_3798394_-	nrdI protein	NA	A0A142F1R4	Bacillus_phage	43.1	6.5e-17
AVC51604.1|3798408_3798630_-	glutaredoxin-like NrdH family protein	NA	V5UN81	Mycobacterium_phage	52.1	7.9e-17
AVC51605.1|3799282_3801556_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	41.1	7.4e-126
>prophage 1
CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	597290	344014	405186	597290	holin,transposase,integrase	Escherichia_phage(20.0%)	53	376336:376354	410396:410414
AVC47681.1|344014_345172_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
AVC47682.1|345430_346324_+	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	30.2	3.2e-24
AVC47683.1|346340_347099_-	fumarylacetoacetate (FAA) hydrolase family protein	NA	NA	NA	NA	NA
AVC47684.1|347291_348671_-	FGGY family of carbohydrate kinase, N-terminal domain protein	NA	NA	NA	NA	NA
AVC47685.1|348667_348961_-	L-rhamnose 1-epimerase	NA	NA	NA	NA	NA
AVC47686.1|348984_349992_-	branched-chain amino acid transport system / permease component family protein	NA	NA	NA	NA	NA
AVC47687.1|349988_350990_-	branched-chain amino acid transport system / permease component family protein	NA	NA	NA	NA	NA
AVC47688.1|351032_352568_-	ABC transporter family protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.8	1.3e-12
AVC47689.1|352640_353663_-	rhamnose ABC transporter, rhamnose-binding protein	NA	NA	NA	NA	NA
AVC47690.1|353684_354497_-	HTH domain protein	NA	A0A077SK06	Escherichia_phage	28.4	3.1e-18
AVC47691.1|354658_356791_+	rhamnulose-1-phosphate aldolase/alcohol dehydrogenase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	28.2	4.7e-05
AVC47692.1|356987_358280_+	L-rhamnose catabolism isomerase	NA	NA	NA	NA	NA
AVC47693.1|358373_358820_-	alkylhydroperoxidase AhpD family core domain protein	NA	NA	NA	NA	NA
AVC47694.1|358943_359813_+	RNA polymerase sigma factor, sigma-70 family protein	NA	NA	NA	NA	NA
AVC47695.1|360080_361298_+	amidohydrolase family protein	NA	NA	NA	NA	NA
AVC47696.1|361320_362160_-	bacterial transcriptional regulator family protein	NA	NA	NA	NA	NA
AVC47697.1|362281_362704_-	PIN domain protein	NA	NA	NA	NA	NA
AVC47698.1|362703_362952_-	prevent-host-death family protein	NA	NA	NA	NA	NA
AVC47699.1|363113_363926_+	enoyl-(Acyl carrier) reductase family protein	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	48.1	7.9e-62
AVC47700.1|364007_364223_-	hypothetical protein	NA	NA	NA	NA	NA
AVC47701.1|364350_364974_+	bacterial regulatory, tetR family protein	NA	NA	NA	NA	NA
AVC47702.1|365114_365303_+	hypothetical protein	NA	NA	NA	NA	NA
AVC47703.1|365299_365734_-	hypothetical protein	NA	NA	NA	NA	NA
AVC47704.1|365886_366165_-	hypothetical protein	NA	NA	NA	NA	NA
AVC47705.1|366440_367811_+	amidase family protein	NA	NA	NA	NA	NA
AVC47706.1|367877_368738_+	xylose isomerase-like TIM barrel family protein	NA	NA	NA	NA	NA
AVC47707.1|368756_370271_-|holin	choline-sulfatase	holin	A0A1V0SA98	Catovirus	26.6	2.1e-23
AVC47708.1|370441_371314_+	lysR substrate binding domain protein	NA	NA	NA	NA	NA
AVC47709.1|371470_371638_+	putative membrane protein	NA	NA	NA	NA	NA
AVC47710.1|371738_372530_+	hpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA	NA
AVC47711.1|372533_373229_-	methyltransferase domain protein	NA	NA	NA	NA	NA
AVC47712.1|373283_374183_-	ABC transporter family protein	NA	G9BWD6	Planktothrix_phage	31.4	1.7e-17
AVC47713.1|374179_374983_-	ABC transporter family protein	NA	G3M9Y6	Bacillus_virus	26.7	1.6e-11
AVC47714.1|374979_375858_-	binding-protein-dependent transport system inner membrane component family protein	NA	NA	NA	NA	NA
AVC47715.1|375859_376837_-	binding-protein-dependent transport system inner membrane component family protein	NA	NA	NA	NA	NA
376336:376354	attL	TCGGAAACCAGCCGAGCGT	NA	NA	NA	NA
AVC47716.1|376895_378542_-	bacterial extracellular solute-binding, 5 Middle family protein	NA	NA	NA	NA	NA
AVC47717.1|378585_379608_-	glycosyl hydrolase family 3 N terminal domain protein	NA	NA	NA	NA	NA
AVC47718.1|379631_380096_-	acetyltransferase domain protein	NA	NA	NA	NA	NA
AVC47719.1|380328_381138_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AVC47720.1|381134_381770_-	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
AVC47721.1|381766_382543_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
AVC47722.1|383408_384047_+	invasion associated locus B family protein	NA	NA	NA	NA	NA
AVC47723.1|384059_385781_+	POTRA domain, ShlB-type family protein	NA	NA	NA	NA	NA
AVC47724.1|385792_386260_+	putative lipoprotein	NA	NA	NA	NA	NA
AVC47725.1|386306_386861_+	putative lipoprotein	NA	NA	NA	NA	NA
AVC47726.1|386960_397034_+	filamentous hemagglutinin family N-terminal domain protein	NA	NA	NA	NA	NA
AVC47727.1|397348_397615_+	hypothetical protein	NA	NA	NA	NA	NA
AVC47728.1|400533_400893_+	hypothetical protein	NA	NA	NA	NA	NA
AVC47729.1|401297_401561_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
AVC47730.1|401584_402385_+|integrase	integrase core domain protein	integrase	S5WIU1	Leptospira_phage	38.8	7.0e-47
AVC47731.1|403413_403734_+	hypothetical protein	NA	NA	NA	NA	NA
AVC47732.1|403996_404926_-|integrase	integrase core domain protein	integrase	S5WIU1	Leptospira_phage	40.8	2.5e-48
AVC47733.1|404919_405186_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
410396:410414	attR	TCGGAAACCAGCCGAGCGT	NA	NA	NA	NA
>prophage 1
CP025505	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvC, complete sequence	405209	136370	164058	405209	transposase,integrase	Stx2-converting_phage(25.0%)	25	156720:156758	164059:164097
AVC45550.1|136370_138026_-|transposase	transposase IS66 family protein	transposase	A0A0P0ZEB3	Stx2-converting_phage	45.5	3.0e-100
AVC45535.1|138071_138335_-|transposase	putative transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	64.1	2.2e-26
AVC45396.1|138415_138826_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AVC45514.1|139134_140496_-	AAA domain protein	NA	V9QJA7	Oenococcus_phage	28.0	7.5e-33
AVC45457.1|140978_141224_-	hypothetical protein	NA	NA	NA	NA	NA
AVC45584.1|142341_142962_-	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
AVC45553.1|142958_143732_-	thiazole biosynthesis ThiG family protein	NA	NA	NA	NA	NA
AVC45467.1|143735_143933_-	thiamine biosynthesis protein ThiS	NA	NA	NA	NA	NA
AVC45649.1|143929_144904_-	glycine oxidase ThiO	NA	NA	NA	NA	NA
AVC45625.1|144905_146723_-	thiamine biosynthesis protein ThiC	NA	NA	NA	NA	NA
AVC45678.1|147149_147596_-	hypothetical protein	NA	NA	NA	NA	NA
AVC45401.1|148281_148590_-	hypothetical protein	NA	NA	NA	NA	NA
AVC45580.1|149898_150828_+	periplasmic binding and sugar binding domain of LacI family protein	NA	NA	NA	NA	NA
AVC45453.1|151966_152896_+	pyridoxal-phosphate dependent enzyme family protein	NA	A0A1X9I5K7	Streptococcus_phage	36.3	8.7e-49
AVC45541.1|154121_154337_+	description family protein	NA	NA	NA	NA	NA
AVC45423.1|155410_156193_-	hypothetical protein	NA	J9Q7Y9	Salmonella_phage	30.5	1.1e-09
AVC45440.1|156189_156534_-	thiamine monophosphate synthase/TENI family protein	NA	NA	NA	NA	NA
AVC45500.1|156530_156719_-	thiazole biosynthesis ThiG family protein	NA	NA	NA	NA	NA
156720:156758	attL	GGTAATCCCCCCATTCTTAACGGGGCTCCGCAGTAGAAA	NA	NA	NA	NA
AVC45393.1|156758_157559_-|integrase	integrase core domain protein	integrase	S5WIU1	Leptospira_phage	38.8	7.0e-47
AVC45416.1|157582_157846_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AVC45528.1|157912_158269_-	thiazole biosynthesis ThiG family protein	NA	NA	NA	NA	NA
AVC45620.1|160343_161498_-	HAMP domain protein	NA	W8CYF6	Bacillus_phage	24.6	8.4e-17
AVC45674.1|161523_161769_+	hypothetical protein	NA	NA	NA	NA	NA
AVC45480.1|162970_163234_+	helix-turn-helix domain protein	NA	NA	NA	NA	NA
AVC45519.1|163257_164058_+|integrase	integrase core domain protein	integrase	S5WIU1	Leptospira_phage	38.8	7.0e-47
164059:164097	attR	TTTCTACTGCGGAGCCCCGTTAAGAATGGGGGGATTACC	NA	NA	NA	NA
>prophage 1
CP025510	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvD, complete sequence	217776	11514	113407	217776	integrase,transposase	Streptococcus_phage(32.14%)	104	57631:57649	110971:110989
AVC52500.1|11514_12240_+|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52501.1|12242_12536_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52502.1|12786_13617_-	DDE domain protein	NA	A0A2P1JR32	Mycobacterium_phage	31.2	2.9e-19
AVC52503.1|13613_13877_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52504.1|14329_14515_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52505.1|14554_15259_+	DDE domain protein	NA	A0A1X9I6C6	Streptococcus_phage	37.3	5.1e-25
AVC52506.1|16099_16291_+	transcriptional regulatory, C terminal family protein	NA	NA	NA	NA	NA
AVC52507.1|16287_17349_+	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	NA	NA	NA	NA	NA
AVC52508.1|17706_18066_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52509.1|18341_18605_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52510.1|19120_19432_+|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52511.1|19491_19671_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52512.1|19870_20251_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52513.1|20303_20777_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52514.1|21183_22278_-|transposase	transposase IS116/IS110/IS902 family protein	transposase	NA	NA	NA	NA
AVC52515.1|23066_23453_-	DDE domain protein	NA	A0A1X9I6E7	Streptococcus_phage	35.0	2.5e-05
AVC52516.1|23438_23852_+	toprim-like family protein	NA	NA	NA	NA	NA
AVC52517.1|23907_24315_-	DDE domain protein	NA	A0A0N9RU54	Staphylococcus_phage	32.1	1.7e-09
AVC52518.1|24413_24857_+	winged helix-turn helix family protein	NA	NA	NA	NA	NA
AVC52519.1|24909_25140_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52520.1|26440_26863_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52521.1|26903_27056_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52522.1|28030_28912_+	omptin family protein	NA	NA	NA	NA	NA
AVC52523.1|28976_29240_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA	NA
AVC52524.1|29271_29997_-|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52525.1|30043_30220_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52526.1|30486_31899_-	efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	NA	NA	NA	NA	NA
AVC52527.1|32179_34129_-	ftsX-like permease family protein	NA	G9BWD6	Planktothrix_phage	40.4	4.7e-36
AVC52528.1|34130_35297_-	efflux transporter, RND family, MFP subunit	NA	A0A140XAI1	Dickeya_phage	42.1	6.7e-14
AVC52529.1|36009_36714_+	DDE domain protein	NA	A0A1X9I6C6	Streptococcus_phage	37.3	5.1e-25
AVC52530.1|36716_36932_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52531.1|36924_37338_-	toprim-like family protein	NA	NA	NA	NA	NA
AVC52532.1|37323_37746_+	DDE domain protein	NA	A0A1X9I6C6	Streptococcus_phage	36.7	1.6e-05
AVC52533.1|37748_38429_-	HAD hydrolase, IA, variant 3 family protein	NA	NA	NA	NA	NA
AVC52534.1|38569_38911_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52535.1|39606_40614_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AVC52536.1|40795_41059_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52537.1|41055_41886_+|integrase	integrase core domain protein	integrase	A0A2P1JR32	Mycobacterium_phage	31.2	2.9e-19
AVC52538.1|42532_42724_+|transposase	putative transposase	transposase	NA	NA	NA	NA
AVC52539.1|43216_43621_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52540.1|43652_44378_-	DDE domain protein	NA	NA	NA	NA	NA
AVC52541.1|44795_45434_-	cobQ/CobB/MinD/ParA nucleotide binding domain protein	NA	NA	NA	NA	NA
AVC52542.1|46011_47316_-|integrase	integrase core domain protein	integrase	K4I413	Acidithiobacillus_phage	46.1	5.4e-89
AVC52543.1|47438_47693_-|transposase	putative transposase domain protein	transposase	NA	NA	NA	NA
AVC52544.1|47732_48557_+	HTH-like domain protein	NA	A0A1B1P773	Bacillus_phage	28.2	3.8e-11
AVC52545.1|48816_49086_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52546.1|49089_49728_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52547.1|49895_50354_-	yecA family protein	NA	NA	NA	NA	NA
AVC52548.1|50476_50740_-|transposase	transposase IS66 family protein	transposase	A0A218MNE7	uncultured_virus	46.2	1.7e-10
AVC52549.1|50793_51498_-|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52550.1|51856_52168_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	48.9	2.7e-18
AVC52551.1|52537_54241_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52552.1|54371_55202_-|integrase	integrase core domain protein	integrase	A0A2P1JR32	Mycobacterium_phage	31.2	2.9e-19
AVC52553.1|55198_55462_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52554.1|56891_57617_-	DDE domain protein	NA	NA	NA	NA	NA
57631:57649	attL	GACAACGTGACATCGCCGG	NA	NA	NA	NA
AVC52555.1|57797_58049_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
AVC52556.1|58263_59043_+|transposase	transposase, Mutator family protein	transposase	A0A218MNI5	uncultured_virus	44.2	8.1e-32
AVC52557.1|59742_60126_+	DDE domain protein	NA	NA	NA	NA	NA
AVC52558.1|60165_60360_+|transposase	putative transposase-like protein	transposase	NA	NA	NA	NA
AVC52559.1|60515_65462_-	AAA domain protein	NA	NA	NA	NA	NA
AVC52560.1|66261_66834_+|transposase	transposase IS116/IS110/IS902 family protein	transposase	NA	NA	NA	NA
AVC52561.1|67490_67754_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52562.1|67866_68154_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52563.1|68369_68834_+	hypothetical protein	NA	A0A2L1IVA1	Escherichia_phage	31.4	2.9e-08
AVC52564.1|69118_69823_-|transposase	transposase IS66 family protein	transposase	A0A1X9I6C6	Streptococcus_phage	37.3	5.1e-25
AVC52565.1|69868_70186_-	DDE domain protein	NA	A0A0N9RU54	Staphylococcus_phage	34.9	1.3e-07
AVC52566.1|70284_70728_+	winged helix-turn helix family protein	NA	NA	NA	NA	NA
AVC52567.1|70780_71506_-	DDE domain protein	NA	NA	NA	NA	NA
AVC52568.1|71784_72387_+	outer membrane beta-barrel domain protein	NA	NA	NA	NA	NA
AVC52569.1|73324_74050_+	DDE domain protein	NA	NA	NA	NA	NA
AVC52570.1|74077_74254_+|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52571.1|74293_74569_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AVC52572.1|74629_75286_-	transcriptional regulatory, C terminal family protein	NA	W8CYM9	Bacillus_phage	26.7	5.3e-16
AVC52573.1|75656_76283_+|transposase	transposase IS66 family protein	transposase	A0A1X9I6E7	Streptococcus_phage	40.8	1.2e-17
AVC52574.1|77114_77840_-	DDE domain protein	NA	NA	NA	NA	NA
AVC52575.1|77829_78039_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52576.1|78088_80575_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52577.1|80614_81319_+	DDE domain protein	NA	A0A1X9I6C6	Streptococcus_phage	37.3	5.1e-25
AVC52578.1|81536_82484_+	transglycosylase SLT domain protein	NA	A0A0H3V0Q1	Geobacillus_virus	57.3	1.1e-19
AVC52579.1|82672_82918_+	trbC/VIRB2 family protein	NA	NA	NA	NA	NA
AVC52580.1|83272_84064_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52581.1|84153_85632_+	AAA-like domain protein	NA	NA	NA	NA	NA
AVC52582.1|86077_86566_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52583.1|86606_87113_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52584.1|87927_88602_+	virB8 family protein	NA	NA	NA	NA	NA
AVC52585.1|88629_89412_+	conjugal transfer family protein	NA	NA	NA	NA	NA
AVC52586.1|89422_90787_+	bacterial conjugation TrbI-like family protein	NA	NA	NA	NA	NA
AVC52587.1|90783_91785_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA	NA
AVC52588.1|92365_93088_+	transcriptional regulatory, C terminal family protein	NA	NA	NA	NA	NA
AVC52589.1|93207_93999_+|transposase	transposase IS66 family protein	transposase	A0A0N9RU54	Staphylococcus_phage	37.7	6.3e-32
AVC52590.1|94037_97115_+	A1 Propeptide family protein	NA	NA	NA	NA	NA
AVC52591.1|97371_101577_+	AAA domain protein	NA	Q7Y5U5	Haemophilus_phage	26.2	4.1e-13
AVC52592.1|101934_102255_-|transposase	transposase DDE domain group 1 family protein	transposase	NA	NA	NA	NA
AVC52593.1|102626_104135_-|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52594.1|104348_105140_-	DDE domain protein	NA	A0A1X9I6C6	Streptococcus_phage	39.4	4.8e-32
AVC52595.1|105268_106576_+|transposase	MULE transposase domain protein	transposase	A0A2P1JQX9	Mycobacterium_phage	45.9	1.4e-92
AVC52596.1|106776_107535_+	DDE domain protein	NA	NA	NA	NA	NA
AVC52597.1|107603_108791_+	traM recognition site of TraD and TraG family protein	NA	NA	NA	NA	NA
AVC52598.1|108823_109528_-|transposase	transposase IS66 family protein	transposase	NA	NA	NA	NA
AVC52599.1|109632_110901_+|transposase	transposase, Mutator family protein	transposase	A0A2P1JQX9	Mycobacterium_phage	45.9	2.3e-92
AVC52600.1|111435_111903_+	hypothetical protein	NA	NA	NA	NA	NA
110971:110989	attR	GACAACGTGACATCGCCGG	NA	NA	NA	NA
AVC52601.1|112167_112341_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52602.1|112337_112625_+	plasmid stabilization system family protein	NA	NA	NA	NA	NA
AVC52603.1|112858_113407_+|transposase	transposase IS66 family protein	transposase	A0A1X9I6E7	Streptococcus_phage	41.3	4.7e-26
>prophage 2
CP025510	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvD, complete sequence	217776	121497	186488	217776	integrase,transposase	Mycobacterium_phage(29.17%)	59	157021:157054	179883:179916
AVC52612.1|121497_122766_+|transposase	transposase, Mutator family protein	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	7.9e-93
AVC52613.1|122819_122963_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52614.1|122956_123460_+	DDE domain protein	NA	A0A0N9RU54	Staphylococcus_phage	40.4	6.2e-25
AVC52615.1|123422_123662_+	DDE domain protein	NA	NA	NA	NA	NA
AVC52616.1|123925_128854_-	AAA domain protein	NA	NA	NA	NA	NA
AVC52617.1|129289_129610_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	44.4	3.9e-17
AVC52618.1|130158_130365_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52619.1|130361_130610_-|transposase	putative transposase domain protein	transposase	NA	NA	NA	NA
AVC52620.1|130606_131146_-|transposase	transposase DDE domain protein	transposase	Q1MVF0	Enterobacteria_phage	44.2	4.5e-29
AVC52621.1|131171_131510_+	DDE domain protein	NA	NA	NA	NA	NA
AVC52622.1|131522_132746_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AVC52623.1|133248_133518_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52624.1|133521_134346_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52625.1|134699_134996_+|transposase	transposase IS66 family protein	transposase	NA	NA	NA	NA
AVC52626.1|135172_135901_+|transposase	transposase, Mutator family protein	transposase	A0A2P1JQX9	Mycobacterium_phage	41.6	3.6e-42
AVC52627.1|136263_136803_+|transposase	transposase DDE domain protein	transposase	Q1MVF0	Enterobacteria_phage	44.2	4.5e-29
AVC52628.1|136799_137048_+|transposase	putative transposase domain protein	transposase	NA	NA	NA	NA
AVC52629.1|137044_137251_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52630.1|137580_137889_+	resolvase, N terminal domain protein	NA	A0A1W5LU24	Ralstonia_phage	65.9	9.4e-08
AVC52631.1|138387_145224_+	shikimate kinase family protein	NA	Q7Y5U5	Haemophilus_phage	26.7	1.1e-12
AVC52632.1|145582_145750_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52633.1|145759_146464_+|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52634.1|146468_148517_-|transposase	tn3 transposase DDE domain protein	transposase	A0A1B0V7H9	Salmonella_phage	35.5	2.8e-116
AVC52635.1|148513_149197_-	hypothetical protein	NA	A0A1B0V7H9	Salmonella_phage	36.0	3.2e-24
AVC52636.1|149346_149940_+	resolvase, N terminal domain protein	NA	A0A219Y912	Aeromonas_phage	34.6	2.2e-21
AVC52637.1|149995_150394_+|transposase	transposase, Mutator family protein	transposase	A0A218MNI5	uncultured_virus	39.8	4.0e-19
AVC52638.1|150404_150980_-|transposase	transposase IS116/IS110/IS902 family protein	transposase	NA	NA	NA	NA
AVC52639.1|151122_151938_-|integrase	integrase core domain protein	integrase	A0A1B1P773	Bacillus_phage	29.0	3.7e-11
AVC52640.1|151958_152225_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AVC52641.1|152338_152944_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52642.1|153086_153272_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52643.1|153690_154908_-	replication C C-terminal region family protein	NA	L7TKN6	Rhizobium_phage	30.5	2.7e-21
AVC52644.1|155724_156555_-	DDE domain protein	NA	A0A2P1JR32	Mycobacterium_phage	31.5	9.9e-20
AVC52645.1|156711_156894_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
157021:157054	attL	ATTTTTGATCGATGCTCGGTTAACGTTACGGTGC	NA	NA	NA	NA
AVC52646.1|157045_157390_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52647.1|157417_158383_+	hypothetical protein	NA	NA	NA	NA	NA
AVC52648.1|158442_158841_+|transposase	transposase IS66 family protein	transposase	A0A1X9I6E7	Streptococcus_phage	40.3	2.4e-16
AVC52649.1|158828_159383_+|transposase	transposase, Mutator family protein	transposase	A0A2P1JQX9	Mycobacterium_phage	54.1	1.2e-42
AVC52650.1|159361_159601_-	DDE domain protein	NA	NA	NA	NA	NA
AVC52651.1|159605_160154_-	DDE domain protein	NA	A0A1X9I6E7	Streptococcus_phage	41.3	4.7e-26
AVC52652.1|160387_160675_-	plasmid stabilization system family protein	NA	NA	NA	NA	NA
AVC52653.1|160671_160845_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52654.1|161109_161577_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52655.1|162111_163380_-|transposase	MULE transposase domain protein	transposase	A0A2P1JQX9	Mycobacterium_phage	45.9	2.3e-92
AVC52656.1|163484_164189_+|transposase	transposase IS66 family protein	transposase	NA	NA	NA	NA
AVC52657.1|164221_166237_-	type IV secretion-system coupling DNA-binding domain protein	NA	NA	NA	NA	NA
AVC52658.1|166437_167745_-|transposase	transposase, Mutator family protein	transposase	A0A2P1JQX9	Mycobacterium_phage	45.9	1.4e-92
AVC52659.1|167873_168665_+|transposase	transposase IS66 family protein	transposase	A0A1X9I6C6	Streptococcus_phage	39.4	4.8e-32
AVC52660.1|168878_170387_+|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AVC52661.1|170758_171079_+|transposase	transposase DDE domain group 1 family protein	transposase	NA	NA	NA	NA
AVC52662.1|171436_178432_-	AAA domain protein	NA	Q7Y5U5	Haemophilus_phage	26.2	6.9e-13
AVC52663.1|179016_179808_-	DDE domain protein	NA	A0A0N9RU54	Staphylococcus_phage	37.7	6.3e-32
AVC52664.1|179927_180650_-	response regulator	NA	NA	NA	NA	NA
179883:179916	attR	ATTTTTGATCGATGCTCGGTTAACGTTACGGTGC	NA	NA	NA	NA
AVC52665.1|180754_180919_-	hypothetical protein	NA	NA	NA	NA	NA
AVC52666.1|181230_182232_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA	NA
AVC52667.1|182228_183593_-	bacterial conjugation TrbI-like family protein	NA	NA	NA	NA	NA
AVC52668.1|183603_184386_-	conjugal transfer family protein	NA	NA	NA	NA	NA
AVC52669.1|184413_185088_-	virB8 family protein	NA	NA	NA	NA	NA
AVC52670.1|185180_186488_-|transposase	transposase, Mutator family protein	transposase	A0A2P1JQX9	Mycobacterium_phage	45.7	4.0e-92
>prophage 1
CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	564641	84649	93758	564641		Planktothrix_phage(33.33%)	9	NA	NA
AVC45786.1|84649_85705_+	ABC transporter family protein	NA	G3M9Y6	Bacillus_virus	35.0	1.3e-27
AVC45787.1|85704_86484_+	glycerophosphoryl diester phosphodiesterase family protein	NA	A0A173GBD0	Staphylococcus_phage	34.3	1.4e-07
AVC45788.1|86521_87472_+	periplasmic binding domain protein	NA	C6ZCU4	Enterobacteria_phage	28.3	5.8e-16
AVC45789.1|87471_88281_+	inositol monophosphatase family protein	NA	NA	NA	NA	NA
AVC45790.1|88356_90015_-	diguanylate cyclase domain protein	NA	A0A127AWB9	Bacillus_phage	37.8	6.8e-20
AVC45791.1|90143_91013_-	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA	NA
AVC45792.1|91078_92173_-	aminotransferase class-V family protein	NA	NA	NA	NA	NA
AVC45793.1|92184_92967_-	ABC transporter family protein	NA	G9BWD6	Planktothrix_phage	31.6	1.5e-17
AVC45794.1|92963_93758_-	AAA domain protein	NA	G9BWD6	Planktothrix_phage	31.2	1.7e-16
