assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002947915.1_ASM294791v1	CP026674	Pseudomonas sp. SWI44 chromosome, complete genome	1	302895-302969	1	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG,csa3,WYL	Orphan	TTTACGTTTACGTAAAGGTGATGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG,csa3,WYL	NA,NA|104aa|down_5|CP026674.1_309479_309791_+	NA|596aa|up_9|CP026674.1_285942_287730_-	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family	NA|141aa|up_8|CP026674.1_287858_288281_-	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein	NA|491aa|up_7|CP026674.1_288288_289761_-	TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108 family	NA|167aa|up_6|CP026674.1_289788_290289_-	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2	NA|519aa|up_5|CP026674.1_290322_291879_-	TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119 family	NA|88aa|up_4|CP026674.1_292713_292977_-	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension	NA|737aa|up_3|CP026674.1_293108_295319_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|1104aa|up_2|CP026674.1_295319_298631_-	TIGR02456, Trehalose_synthase, trehalose synthase	NA|673aa|up_1|CP026674.1_298775_300794_-	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|556aa|up_0|CP026674.1_301163_302831_-	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|388aa|down_0|CP026674.1_303049_304213_+	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|536aa|down_1|CP026674.1_304232_305840_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|272aa|down_2|CP026674.1_305843_306659_+	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated	NA|651aa|down_3|CP026674.1_306655_308608_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|236aa|down_4|CP026674.1_308683_309391_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|104aa|down_5|CP026674.1_309479_309791_+	NA	NA|172aa|down_6|CP026674.1_310223_310739_+	pfam16220, DUF4880, Domain of unknown function (DUF4880)	NA|261aa|down_7|CP026674.1_310903_311686_-	pfam04199, Cyclase, Putative cyclase	NA|329aa|down_8|CP026674.1_311682_312669_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|331aa|down_9|CP026674.1_312659_313652_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_002947915.1_ASM294791v1	CP026674	Pseudomonas sp. SWI44 chromosome, complete genome	2	371054-371132	2	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG,csa3,WYL	Orphan	GAGTCGGCGGTTTTGGTCTGTTTCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG,csa3,WYL	NA|141aa|up_9|CP026674.1_361907_362330_+,NA|86aa|up_3|CP026674.1_367978_368236_-,NA|241aa|up_1|CP026674.1_369277_370000_-,NA|106aa|up_0|CP026674.1_370011_370329_-,NA|69aa|down_1|CP026674.1_372585_372792_-,NA|103aa|down_2|CP026674.1_372781_373090_-,NA|75aa|down_3|CP026674.1_373169_373394_-,NA|271aa|down_7|CP026674.1_377427_378240_-,NA|292aa|down_8|CP026674.1_378255_379131_-,NA|105aa|down_9|CP026674.1_379131_379446_-	NA|141aa|up_9|CP026674.1_361907_362330_+	NA	NA|200aa|up_8|CP026674.1_362371_362971_+	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|433aa|up_7|CP026674.1_363938_365237_-	TIGR01537, portal_protein, phage portal protein, HK97 family	NA|560aa|up_6|CP026674.1_365387_367067_-	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|113aa|up_5|CP026674.1_367220_367559_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|108aa|up_4|CP026674.1_367558_367882_-	pfam05106, Phage_holin_3_1, Phage holin family (Lysis protein S)	NA|86aa|up_3|CP026674.1_367978_368236_-	NA	NA|332aa|up_2|CP026674.1_368278_369274_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|241aa|up_1|CP026674.1_369277_370000_-	NA	NA|106aa|up_0|CP026674.1_370011_370329_-	NA	NA|312aa|down_0|CP026674.1_371343_372279_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|69aa|down_1|CP026674.1_372585_372792_-	NA	NA|103aa|down_2|CP026674.1_372781_373090_-	NA	NA|75aa|down_3|CP026674.1_373169_373394_-	NA	NA|175aa|down_4|CP026674.1_375808_376333_-	pfam10721, DUF2514, Protein of unknown function (DUF2514)	NA|149aa|down_5|CP026674.1_376329_376776_-	PHA02564, V, virion protein; Provisional	NA|132aa|down_6|CP026674.1_376834_377230_-	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|271aa|down_7|CP026674.1_377427_378240_-	NA	NA|292aa|down_8|CP026674.1_378255_379131_-	NA	NA|105aa|down_9|CP026674.1_379131_379446_-	NA
GCA_002947915.1_ASM294791v1	CP026674	Pseudomonas sp. SWI44 chromosome, complete genome	3	3360412-3360519	3	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG,csa3,WYL	Orphan	CCTACGTTTGTTTCGGGCCAGTAACGGCAGTGA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG,csa3,WYL	NA,NA	NA|204aa|up_9|CP026674.1_3346912_3347524_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|308aa|up_8|CP026674.1_3347759_3348683_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|405aa|up_7|CP026674.1_3348873_3350088_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|387aa|up_6|CP026674.1_3350445_3351606_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|824aa|up_5|CP026674.1_3351676_3354148_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|319aa|up_4|CP026674.1_3354244_3355201_-	PRK09774, PRK09774, fec operon regulator FecR; Reviewed	NA|172aa|up_3|CP026674.1_3355187_3355703_-	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|209aa|up_2|CP026674.1_3355876_3356503_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|353aa|up_1|CP026674.1_3356538_3357597_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|801aa|up_0|CP026674.1_3357653_3360056_+	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|477aa|down_0|CP026674.1_3360625_3362056_-	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like	NA|500aa|down_1|CP026674.1_3362069_3363569_-	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	NA|130aa|down_2|CP026674.1_3363665_3364055_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|207aa|down_3|CP026674.1_3364297_3364918_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|273aa|down_4|CP026674.1_3365023_3365842_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|574aa|down_5|CP026674.1_3365941_3367663_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|366aa|down_6|CP026674.1_3367745_3368843_+	PRK10983, PRK10983, AI-2E family transporter YdiK	NA|505aa|down_7|CP026674.1_3368855_3370370_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|367aa|down_8|CP026674.1_3370366_3371467_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|340aa|down_9|CP026674.1_3371456_3372476_+	pfam11168, DUF2955, Protein of unknown function (DUF2955)
GCA_002947915.1_ASM294791v1	CP026674	Pseudomonas sp. SWI44 chromosome, complete genome	4	4996683-4996825	4	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG,csa3,WYL	Orphan	CCGTAGCCGCTGCCGCAGGCTGCTCAGGCCCTGTGCCTCGCTGA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG,csa3,WYL	NA|87aa|up_8|CP026674.1_4989157_4989418_-,NA|61aa|up_7|CP026674.1_4989893_4990076_+,NA|88aa|up_2|CP026674.1_4993683_4993947_-,NA	NA|161aa|up_9|CP026674.1_4988306_4988789_+	pfam03928, Haem_degrading, Haem-degrading	NA|87aa|up_8|CP026674.1_4989157_4989418_-	NA	NA|61aa|up_7|CP026674.1_4989893_4990076_+	NA	NA|356aa|up_6|CP026674.1_4990382_4991450_+	cd05657, M42_glucanase_like, M42 Peptidase, endoglucanase-like subfamily	NA|153aa|up_5|CP026674.1_4991446_4991905_+	cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases	NA|133aa|up_4|CP026674.1_4992221_4992620_-	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase	NA|266aa|up_3|CP026674.1_4992767_4993565_-	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|88aa|up_2|CP026674.1_4993683_4993947_-	NA	NA|263aa|up_1|CP026674.1_4994331_4995120_-	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|456aa|up_0|CP026674.1_4995285_4996653_-	PRK06105, PRK06105, aminotransferase; Provisional	NA|294aa|down_0|CP026674.1_4996877_4997759_-	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|298aa|down_1|CP026674.1_4998011_4998905_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|441aa|down_2|CP026674.1_4998937_5000260_+	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]	NA|343aa|down_3|CP026674.1_5000448_5001477_+	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|266aa|down_4|CP026674.1_5001550_5002348_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|329aa|down_5|CP026674.1_5002526_5003513_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|497aa|down_6|CP026674.1_5003509_5005000_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|388aa|down_7|CP026674.1_5005041_5006205_-	cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor	NA|550aa|down_8|CP026674.1_5006527_5008177_+	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|850aa|down_9|CP026674.1_5008303_5010853_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]
GCA_002947915.1_ASM294791v1	CP026674	Pseudomonas sp. SWI44 chromosome, complete genome	5	5647121-5647195	5	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG,csa3,WYL	Orphan	TGTTAAGTTCAAGTTGCTCGGGTG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG,csa3,WYL	NA,NA|244aa|down_1|CP026674.1_5649065_5649797_-,NA|100aa|down_2|CP026674.1_5650608_5650908_+,NA|79aa|down_3|CP026674.1_5651416_5651653_+	NA|417aa|up_9|CP026674.1_5636290_5637541_-	pfam03573, OprD, outer membrane porin, OprD family	NA|400aa|up_8|CP026674.1_5637615_5638815_-	pfam03594, BenE, Benzoate membrane transport protein	NA|305aa|up_7|CP026674.1_5638958_5639873_-	TIGR02439, Catechol_12-dioxygenase_1, catechol 1,2-dioxygenase, proteobacterial	NA|97aa|up_6|CP026674.1_5639912_5640203_-	TIGR03221, muco_delta, muconolactone delta-isomerase	NA|374aa|up_5|CP026674.1_5640323_5641445_-	cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway	NA|443aa|up_4|CP026674.1_5641474_5642803_-	TIGR00895, transport_protein, benzoate transport	NA|254aa|up_3|CP026674.1_5642857_5643619_-	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional	NA|337aa|up_2|CP026674.1_5643778_5644789_-	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	NA|162aa|up_1|CP026674.1_5644861_5645347_-	TIGR03232, benzo_1_2_benB, benzoate 1,2-dioxygenase, small subunit	NA|453aa|up_0|CP026674.1_5645343_5646702_-	TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit	NA|319aa|down_0|CP026674.1_5647803_5648760_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|244aa|down_1|CP026674.1_5649065_5649797_-	NA	NA|100aa|down_2|CP026674.1_5650608_5650908_+	NA	NA|79aa|down_3|CP026674.1_5651416_5651653_+	NA	NA|264aa|down_4|CP026674.1_5651783_5652575_-	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases	NA|452aa|down_5|CP026674.1_5652753_5654109_+	pfam17164, DUF5122, Domain of unknown function (DUF5122) beta-propeller	NA|297aa|down_6|CP026674.1_5654289_5655180_+	PRK11175, PRK11175, universal stress protein UspE; Provisional	NA|714aa|down_7|CP026674.1_5655336_5657478_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|174aa|down_8|CP026674.1_5657565_5658087_-	pfam09411, PagL, Lipid A 3-O-deacylase (PagL)	NA|249aa|down_9|CP026674.1_5658284_5659031_-	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
