assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002947575.1_ASM294757v1	CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	1	103346-103441	1	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Orphan	AATGTGTAAGATTTTTATATATAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|74aa|up_9|CP026670.1_93836_94058_+,NA|107aa|down_7|CP026670.1_112597_112918_-	NA|74aa|up_9|CP026670.1_93836_94058_+	NA	NA|310aa|up_8|CP026670.1_94376_95306_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_7|CP026670.1_95319_96243_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|492aa|up_6|CP026670.1_96452_97928_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|329aa|up_5|CP026670.1_98199_99186_+	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|287aa|up_4|CP026670.1_99459_100320_+	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|355aa|up_3|CP026670.1_100391_101456_-	pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal region	NA|304aa|up_2|CP026670.1_101517_102429_-	pfam13349, DUF4097, Putative adhesin	NA|198aa|up_1|CP026670.1_102421_103015_-	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|109aa|up_0|CP026670.1_103001_103328_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|386aa|down_0|CP026670.1_104689_105847_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|617aa|down_1|CP026670.1_105888_107739_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|419aa|down_2|CP026670.1_107778_109035_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|211aa|down_3|CP026670.1_109509_110142_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|291aa|down_4|CP026670.1_110163_111036_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|224aa|down_5|CP026670.1_111044_111716_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|196aa|down_6|CP026670.1_111957_112545_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|107aa|down_7|CP026670.1_112597_112918_-	NA	NA|96aa|down_8|CP026670.1_113348_113636_+	TIGR01653, hypothetical_protein, bacteriocin, lactococcin 972 family	NA|703aa|down_9|CP026670.1_113687_115796_+	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein
GCA_002947575.1_ASM294757v1	CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	3	1255168-1255250	3	CRISPRCasFinder	no	RT	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Unclear	TTCTGGTGTCTGCCACCGCTTGGCCCTTA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|104aa|up_6|CP026670.1_1244544_1244856_-,NA|95aa|up_5|CP026670.1_1244848_1245133_-,NA|324aa|up_4|CP026670.1_1245207_1246179_-,NA|137aa|up_1|CP026670.1_1253979_1254390_-,NA|285aa|down_3|CP026670.1_1260891_1261746_-,NA|81aa|down_4|CP026670.1_1261762_1262005_-,NA|163aa|down_6|CP026670.1_1263902_1264391_-,NA|100aa|down_7|CP026670.1_1264380_1264680_-	NA|247aa|up_9|CP026670.1_1241391_1242132_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|312aa|up_8|CP026670.1_1242124_1243060_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|287aa|up_7|CP026670.1_1243601_1244462_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|104aa|up_6|CP026670.1_1244544_1244856_-	NA	NA|95aa|up_5|CP026670.1_1244848_1245133_-	NA	NA|324aa|up_4|CP026670.1_1245207_1246179_-	NA	RT|604aa|up_3|CP026670.1_1246259_1248071_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|1766aa|up_2|CP026670.1_1248634_1253932_-	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair]	NA|137aa|up_1|CP026670.1_1253979_1254390_-	NA	NA|189aa|up_0|CP026670.1_1254541_1255108_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|938aa|down_0|CP026670.1_1255345_1258159_-	pfam18013, Phage_lysozyme2, Phage tail lysozyme	NA|772aa|down_1|CP026670.1_1258170_1260486_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|121aa|down_2|CP026670.1_1260475_1260838_-	pfam12666, PrgI, PrgI family protein	NA|285aa|down_3|CP026670.1_1260891_1261746_-	NA	NA|81aa|down_4|CP026670.1_1261762_1262005_-	NA	NA|626aa|down_5|CP026670.1_1262025_1263903_-	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer	NA|163aa|down_6|CP026670.1_1263902_1264391_-	NA	NA|100aa|down_7|CP026670.1_1264380_1264680_-	NA	NA|279aa|down_8|CP026670.1_1264962_1265799_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|197aa|down_9|CP026670.1_1265798_1266389_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin
GCA_002947575.1_ASM294757v1	CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	6	1758262-1758346	5	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Orphan	CTTTTTTTGAAACGTTTCATTTTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|60aa|up_7|CP026670.1_1750790_1750970_-,NA|80aa|up_6|CP026670.1_1751134_1751374_-,NA|69aa|up_5|CP026670.1_1751296_1751503_+,NA	NA|151aa|up_9|CP026670.1_1749985_1750438_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|69aa|up_8|CP026670.1_1750474_1750681_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|60aa|up_7|CP026670.1_1750790_1750970_-	NA	NA|80aa|up_6|CP026670.1_1751134_1751374_-	NA	NA|69aa|up_5|CP026670.1_1751296_1751503_+	NA	NA|424aa|up_4|CP026670.1_1751643_1752915_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|440aa|up_3|CP026670.1_1753459_1754779_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|539aa|up_2|CP026670.1_1754788_1756405_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|297aa|up_1|CP026670.1_1756433_1757324_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|306aa|up_0|CP026670.1_1757334_1758252_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|334aa|down_0|CP026670.1_1758402_1759404_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|494aa|down_1|CP026670.1_1759765_1761247_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|55aa|down_2|CP026670.1_1761689_1761854_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|189aa|down_3|CP026670.1_1761937_1762504_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|57aa|down_4|CP026670.1_1762515_1762686_+	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|203aa|down_5|CP026670.1_1762724_1763333_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|68aa|down_6|CP026670.1_1763363_1763567_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_7|CP026670.1_1764823_1765594_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|283aa|down_8|CP026670.1_1765608_1766457_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|492aa|down_9|CP026670.1_1766453_1767929_-	PRK13759, PRK13759, arylsulfatase; Provisional
