The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	24244	33082	2221315	integrase	Streptococcus_phage(75.0%)	14	26304:26319	32557:32572
AVD76110.1|24244_25531_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
AVD74068.1|25731_26199_+	nucleoside deaminase	NA	NA	NA	NA	NA
26304:26319	attL	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
AVD74069.1|26407_27106_-|integrase	site-specific integrase	integrase	A0A1S5SDQ9	Streptococcus_phage	100.0	6.0e-127
AVD74070.1|27195_27549_-|integrase	integrase	integrase	U4KJ82	Streptococcus_phage	97.3	4.5e-54
AVD74071.1|27603_28674_-	endonuclease	NA	A0A1S5SAB0	Streptococcus_phage	97.8	2.9e-181
AVD74072.1|28690_29071_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SBG5	Streptococcus_phage	98.4	1.7e-67
AVD74073.1|29083_29347_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	100.0	1.2e-43
AVD74074.1|29346_29580_-	hypothetical protein	NA	A0A1S5S8D5	Streptococcus_phage	96.1	8.9e-35
AVD74075.1|29579_29948_-	XRE family transcriptional regulator	NA	A0A1S5SBE7	Streptococcus_phage	100.0	1.4e-63
AVD74076.1|30519_30711_+	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	100.0	3.0e-28
AVD74077.1|30733_30937_+	hypothetical protein	NA	A0A141E1R6	Streptococcus_phage	95.5	1.3e-29
AVD74078.1|31091_31259_-	YjzC family protein	NA	NA	NA	NA	NA
AVD74079.1|31863_32043_-	hypothetical protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
AVD74080.1|32638_33082_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
32557:32572	attR	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
>prophage 2
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	48355	59666	2221315		Synechococcus_phage(33.33%)	7	NA	NA
AVD74094.1|48355_50509_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	3.6e-45
AVD74095.1|50521_51871_+	transporter ComB	NA	NA	NA	NA	NA
AVD74096.1|51998_52748_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.4e-41
AVD74097.1|52804_56530_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	1.6e-37
AVD74098.1|56622_58065_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
AVD74099.1|58101_59124_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
AVD74100.1|59120_59666_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 3
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	107778	133349	2221315	transposase,tRNA,bacteriocin	Streptococcus_phage(60.0%)	26	NA	NA
AVD74145.1|107778_109035_-|transposase	ISL3-like element IS1167A family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.0	4.4e-237
AVD74146.1|109509_110142_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AVD74147.1|110163_111036_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
AVD74148.1|111044_111716_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
AVD74149.1|111957_112545_+	LysM domain-containing protein	NA	A0A288TY55	Enterococcus_phage	56.2	1.7e-26
AVD74150.1|112597_112918_-	DNA-binding protein	NA	NA	NA	NA	NA
AVD74151.1|113348_113636_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AVD74152.1|113687_115796_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AVD74153.1|115792_116434_+|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	34.8	4.3e-23
AVD74154.1|116640_117447_+	amino acid ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AVD74155.1|117412_117883_+	argininosuccinate synthase	NA	NA	NA	NA	NA
AVD74156.1|118172_118493_-	DNA-binding protein	NA	NA	NA	NA	NA
AVD74157.1|118924_119113_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74158.1|119109_120366_-|transposase	ISL3-like element IS1167A family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.0	4.4e-237
AVD76115.1|121000_121759_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74159.1|122833_123133_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74160.1|123117_123396_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	50.5	4.3e-20
AVD74161.1|126258_127380_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AVD74162.1|127493_127976_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AVD74163.1|127985_129899_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AVD74164.1|130277_131957_-	ribonuclease J	NA	NA	NA	NA	NA
AVD74165.1|131958_132192_-	hypothetical protein	NA	NA	NA	NA	NA
AVD74166.1|132575_132797_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74167.1|132818_133016_-	hypothetical protein	NA	NA	NA	NA	NA
AVD74168.1|133009_133162_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVD74169.1|133163_133349_-|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
>prophage 4
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	410976	522241	2221315	tRNA,integrase,protease,bacteriocin,transposase	Klosneuvirus(11.11%)	109	405528:405572	463779:463823
405528:405572	attL	CTTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
AVD74445.1|410976_411948_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AVD74446.1|413194_414256_-	DNA polymerase IV	NA	NA	NA	NA	NA
AVD76122.1|414271_414358_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
AVD74447.1|414603_416928_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	1.3e-114
AVD76123.1|417294_417510_-	hypothetical protein	NA	NA	NA	NA	NA
AVD74448.1|417839_418124_-	hypothetical protein	NA	NA	NA	NA	NA
AVD74449.1|419464_419653_+	PTS maltose transporter subunit IIBC	NA	NA	NA	NA	NA
AVD74450.1|419665_419923_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AVD74451.1|420047_421487_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AVD74452.1|421490_422840_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
AVD74453.1|423027_423876_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
AVD74454.1|423890_424439_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
AVD74455.1|424804_426487_+	heme ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	7.7e-19
AVD74456.1|426471_427302_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
AVD74457.1|427494_427998_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AVD74458.1|428450_429014_+	ECF transporter S component	NA	NA	NA	NA	NA
AVD74459.1|429003_429654_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AVD74460.1|429681_430071_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
AVD74461.1|430075_430525_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVD74462.1|430637_431240_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
AVD74463.1|431629_433237_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	1.5e-141
AVD74464.1|433795_435427_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
AVD74465.1|435719_440630_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
AVD74466.1|440719_441916_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AVD74467.1|442051_442579_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
AVD74468.1|442655_443012_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AVD74469.1|443048_444395_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AVD74470.1|444490_444610_-	glutamine synthetase	NA	NA	NA	NA	NA
AVD74471.1|444574_444724_+	cell envelope	NA	NA	NA	NA	NA
AVD74472.1|445154_446471_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AVD74473.1|446418_447027_-	restriction endonuclease	NA	A0A1V0SLK8	Klosneuvirus	30.1	3.9e-13
AVD74474.1|447037_447835_-|integrase	integrase	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
AVD74475.1|447891_449442_-	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	8.4e-12
AVD74476.1|449441_450905_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
AVD74477.1|450917_453251_-	restriction endonuclease subunit R	NA	A0A097BY72	Enterococcus_phage	26.3	5.8e-25
AVD74478.1|453623_453824_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74479.1|453858_454368_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
AVD74480.1|454531_455566_+	HrcA family transcriptional regulator	NA	NA	NA	NA	NA
AVD74481.1|455592_456117_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AVD74482.1|456596_458420_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
AVD74483.1|458421_458778_+|tRNA	tRNA (guanine-N7)-methyltransferase	tRNA	NA	NA	NA	NA
AVD74484.1|459179_460316_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
AVD74485.1|460344_460431_-	chlorohydrolase	NA	NA	NA	NA	NA
AVD76124.1|460627_460729_-|tRNA	lysyl-tRNA synthetase	tRNA	NA	NA	NA	NA
AVD74486.1|461073_461361_-	hypothetical protein	NA	NA	NA	NA	NA
AVD74487.1|461370_461781_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
AVD74488.1|461848_462580_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
AVD74489.1|462576_463626_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
AVD74490.1|463793_464123_-	helicase BlpT	NA	NA	NA	NA	NA
463779:463823	attR	CTTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
AVD74491.1|464398_464737_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVD74492.1|464741_465479_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVD74493.1|465492_466833_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVD74494.1|466903_467032_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
AVD74495.1|467088_468450_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
AVD74496.1|470899_471097_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
AVD74497.1|471101_471263_+	immunity protein	NA	NA	NA	NA	NA
AVD74498.1|471563_471833_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVD76125.1|471916_472150_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVD74499.1|472168_472378_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVD74500.1|472393_472543_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVD74501.1|472646_472766_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AVD74502.1|473062_473224_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74503.1|473233_473605_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74504.1|473782_473962_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74505.1|474218_474617_+	immunity protein	NA	NA	NA	NA	NA
AVD74506.1|474668_475358_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVD74507.1|475399_475633_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74508.1|475783_476395_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVD74509.1|476555_477350_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AVD74510.1|477346_477982_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AVD74511.1|478107_478587_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AVD74512.1|478630_479767_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AVD74513.1|479788_480082_+	DUF448 domain-containing protein	NA	NA	NA	NA	NA
AVD74514.1|480074_480374_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74515.1|480390_483183_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	2.6e-19
AVD74516.1|483433_483784_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AVD74517.1|484026_484842_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74518.1|484843_485026_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74519.1|484985_485174_+	hypothetical protein	NA	NA	NA	NA	NA
AVD74520.1|485303_485546_-	hypothetical protein	NA	NA	NA	NA	NA
AVD74521.1|485576_485810_+	DUF1858 domain-containing protein	NA	NA	NA	NA	NA
AVD74522.1|485809_487144_+	DUF438 domain-containing protein	NA	NA	NA	NA	NA
AVD74523.1|487153_487408_+	DUF1912 domain-containing protein	NA	NA	NA	NA	NA
AVD74524.1|487503_487899_+	helicase	NA	NA	NA	NA	NA
AVD74525.1|488311_488761_+	flavin reductase	NA	NA	NA	NA	NA
AVD74526.1|488747_489305_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVD74527.1|489306_490269_+	ribosome-binding factor A	NA	NA	NA	NA	NA
AVD74528.1|490280_492932_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.1	7.0e-152
AVD74529.1|492986_493757_+	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
AVD74530.1|494037_494841_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
AVD74531.1|496703_499262_+	DEAD/DEAH box helicase	NA	I3UKD0	Ostreococcus_lucimarinus_virus	29.2	1.2e-28
AVD74532.1|499561_500401_+	PRD domain-containing protein	NA	NA	NA	NA	NA
AVD74533.1|500418_502257_+	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AVD74534.1|502269_503685_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	23.7	1.9e-23
AVD76126.1|504276_505323_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
AVD74535.1|505322_505832_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVD74536.1|505908_508311_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AVD74537.1|508378_509380_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
AVD74538.1|510107_510374_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVD74539.1|510634_512884_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
AVD74540.1|512947_513814_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AVD74541.1|513995_514265_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA	NA
AVD74542.1|514498_516712_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AVD74543.1|516727_517345_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
AVD74544.1|517356_518241_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVD74545.1|518327_519671_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.8	1.2e-46
AVD74546.1|519663_520050_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
AVD74547.1|520053_520938_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
AVD74548.1|520984_522241_-|transposase	ISL3-like element IS1167A family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.0	4.4e-237
>prophage 5
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	832439	842826	2221315		Streptococcus_phage(70.0%)	11	NA	NA
AVD74821.1|832439_833348_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
AVD74822.1|833344_833806_+	signal peptidase II	NA	NA	NA	NA	NA
AVD74823.1|833795_834683_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.7e-09
AVD74824.1|834685_836569_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
AVD74825.1|836648_837779_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
AVD74826.1|837788_839051_+	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	4.2e-139
AVD74827.1|839054_839852_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	8.0e-59
AVD74828.1|840071_840710_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
AVD74829.1|840706_841597_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
AVD74830.1|841636_841954_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
AVD74831.1|841956_842826_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.4	3.8e-115
>prophage 6
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	1082965	1143256	2221315	holin,protease,tRNA,bacteriocin	Bacillus_phage(18.75%)	54	NA	NA
AVD75051.1|1082965_1083268_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AVD75052.1|1083508_1084387_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AVD75053.1|1084396_1085671_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
AVD75054.1|1087173_1087971_-	formate-nitrite transporter	NA	NA	NA	NA	NA
AVD75055.1|1088214_1088958_-	sortase	NA	NA	NA	NA	NA
AVD75056.1|1088957_1091426_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	3.5e-105
AVD75057.1|1091619_1092606_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
AVD75058.1|1092853_1093627_-	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	47.1	5.2e-23
AVD75059.1|1093673_1093937_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AVD75060.1|1093929_1094232_-	antitoxin	NA	NA	NA	NA	NA
AVD75061.1|1094262_1095072_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
AVD75062.1|1095073_1096423_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
AVD75063.1|1096415_1097120_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
AVD75064.1|1097174_1098350_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AVD75065.1|1098677_1100348_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
AVD75066.1|1100577_1101267_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
AVD75067.1|1101278_1101830_+	phosphopantothenoylcysteine decarboxylase	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
AVD75068.1|1101813_1102377_+	ECF transporter S component	NA	NA	NA	NA	NA
AVD75069.1|1102658_1103186_+	hypothetical protein	NA	NA	NA	NA	NA
AVD75070.1|1103197_1103713_+	transcription repressor NadR	NA	NA	NA	NA	NA
AVD75071.1|1103709_1104177_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
AVD75072.1|1104250_1104739_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVD75073.1|1104704_1105268_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVD75074.1|1105277_1107266_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AVD75075.1|1107342_1108296_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVD75076.1|1108468_1110634_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AVD75077.1|1110633_1111374_+	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	2.8e-18
AVD75078.1|1111522_1113010_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	32.8	7.1e-69
AVD75079.1|1113055_1114345_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
AVD75080.1|1114348_1115167_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AVD75081.1|1115166_1115961_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AVD75082.1|1115957_1119497_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AVD75083.1|1119487_1120186_-	ribonuclease 3	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.3	1.1e-24
AVD75084.1|1120503_1121490_-	guanosine monophosphate reductase	NA	G3MBI2	Bacillus_virus	72.2	1.1e-137
AVD75085.1|1121723_1122962_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AVD75086.1|1122948_1124865_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
AVD75087.1|1125025_1125196_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75088.1|1125808_1126168_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AVD75089.1|1126171_1126441_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
AVD75090.1|1126437_1127475_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AVD75091.1|1128599_1129256_-	MmcQ family protein	NA	NA	NA	NA	NA
AVD75092.1|1129299_1129932_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AVD75093.1|1130024_1130384_-	DUF454 domain-containing protein	NA	NA	NA	NA	NA
AVD75094.1|1130489_1132577_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.5	1.5e-104
AVD75095.1|1132743_1133787_-	TIGR00341 family protein	NA	NA	NA	NA	NA
AVD75096.1|1134675_1135524_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
AVD75097.1|1135619_1136309_-|holin	CTP--phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
AVD75098.1|1136320_1137199_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVD75099.1|1137188_1138058_-|holin	choline kinase	holin	NA	NA	NA	NA
AVD75100.1|1138074_1139097_-	ribitol-5-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVD75101.1|1139101_1139809_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AVD75102.1|1140144_1141632_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AVD75103.1|1141641_1142445_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
AVD75104.1|1142446_1143256_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
>prophage 7
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	1151726	1206155	2221315	transposase,protease	Bacillus_phage(30.0%)	54	NA	NA
AVD75111.1|1151726_1152680_+|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	34.9	8.1e-34
AVD75112.1|1152961_1154521_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
AVD75113.1|1154669_1155569_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AVD75114.1|1155570_1156131_-	LemA family protein	NA	NA	NA	NA	NA
AVD75115.1|1156224_1156938_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AVD75116.1|1157253_1158573_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.3	2.4e-60
AVD75117.1|1158767_1160339_-	signal recognition particle protein	NA	NA	NA	NA	NA
AVD75118.1|1160350_1160683_-	putative DNA-binding protein	NA	NA	NA	NA	NA
AVD75119.1|1160773_1161151_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
AVD75120.1|1161222_1162527_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.2	1.7e-26
AVD75121.1|1162539_1163346_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AVD75122.1|1163513_1163861_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AVD75123.1|1163979_1164309_-	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	6.3e-10
AVD75124.1|1164302_1164677_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
AVD75125.1|1164673_1164940_-	chorismate mutase	NA	NA	NA	NA	NA
AVD75126.1|1165055_1165499_-	flavodoxin	NA	NA	NA	NA	NA
AVD75127.1|1165602_1166538_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
AVD76143.1|1166633_1166876_+	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
AVD75128.1|1166932_1167151_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75129.1|1168235_1169582_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AVD76144.1|1169827_1169944_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
AVD75130.1|1170087_1170258_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75131.1|1171761_1171920_-	hypothetical protein	NA	NA	NA	NA	NA
AVD76145.1|1172514_1172898_-|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	26.0	8.4e-06
AVD75132.1|1173408_1173732_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AVD76146.1|1173712_1173898_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75133.1|1174170_1174782_-	V-type ATP synthase subunit D	NA	NA	NA	NA	NA
AVD75134.1|1174804_1176190_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AVD75135.1|1176190_1177966_-	V-type ATP synthase alpha chain	NA	NA	NA	NA	NA
AVD75136.1|1178028_1178349_-	V-type ATP synthase subunit F	NA	NA	NA	NA	NA
AVD75137.1|1178338_1179346_-	V-type ATP synthase subunit C	NA	NA	NA	NA	NA
AVD75138.1|1179410_1179992_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75139.1|1180025_1180502_-	V-type ATP synthase subunit K	NA	NA	NA	NA	NA
AVD75140.1|1180517_1182509_-	V-type ATP synthase subunit I	NA	NA	NA	NA	NA
AVD75141.1|1182498_1182822_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75142.1|1182846_1183737_-	ROK family protein	NA	NA	NA	NA	NA
AVD75143.1|1183893_1185003_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AVD75144.1|1185042_1187265_-	sialidase	NA	NA	NA	NA	NA
AVD75145.1|1187266_1187725_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
AVD75146.1|1187750_1189292_-	sodium:solute symporter	NA	NA	NA	NA	NA
AVD75147.1|1189319_1190237_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
AVD75148.1|1190261_1190951_-	putative N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
AVD75149.1|1191722_1192979_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.8	2.5e-224
AVD75150.1|1193089_1193848_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVD75151.1|1194025_1194634_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
AVD76147.1|1194868_1196220_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	6.5e-61
AVD75152.1|1196515_1196653_-	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
AVD75153.1|1196786_1198106_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75154.1|1198108_1198867_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.2e-09
AVD75155.1|1198863_1200471_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.0	6.6e-12
AVD75156.1|1200467_1202408_-	S9 family peptidase	NA	NA	NA	NA	NA
AVD75157.1|1202440_1205077_-	lanthionine synthetase	NA	NA	NA	NA	NA
AVD75158.1|1205228_1205366_-	SapB/AmfS family lantipeptide	NA	NA	NA	NA	NA
AVD75159.1|1205567_1206155_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 8
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	1266819	1283038	2221315		Streptococcus_phage(93.75%)	20	NA	NA
AVD75216.1|1266819_1267134_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AVD75217.1|1267149_1267536_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AVD75218.1|1267564_1268950_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AVD75219.1|1268952_1269105_+	conjugal transfer protein	NA	NA	NA	NA	NA
AVD75220.1|1269127_1270333_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AVD75221.1|1270375_1270597_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AVD75222.1|1270713_1271211_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AVD75223.1|1271185_1271692_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AVD75224.1|1271675_1274123_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AVD75225.1|1276294_1277296_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AVD75226.1|1277292_1278225_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AVD75227.1|1278499_1278586_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AVD75228.1|1278601_1280521_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A2K5B2A5	Erysipelothrix_phage	97.5	0.0e+00
AVD75229.1|1280621_1280807_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AVD75230.1|1280866_1281220_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AVD76151.1|1281424_1281496_+	hypothetical protein	NA	NA	NA	NA	NA
AVD75231.1|1281724_1282147_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AVD75232.1|1282143_1282374_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AVD75233.1|1282599_1282851_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75234.1|1282834_1283038_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
>prophage 9
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	1329221	1388033	2221315	holin,transposase,protease,tRNA	Streptococcus_phage(20.0%)	70	NA	NA
AVD75278.1|1329221_1329974_-|protease	YhfC family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVD75279.1|1329983_1330715_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
AVD75280.1|1330856_1332128_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	47.5	1.3e-103
AVD75281.1|1332147_1332963_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVD75282.1|1333119_1333773_-	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
AVD75283.1|1333784_1334543_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.7e-15
AVD75284.1|1334555_1335359_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	9.6e-12
AVD75285.1|1335369_1336254_-	phosphate ABC transporter permease PtsA	NA	NA	NA	NA	NA
AVD75286.1|1337160_1338039_-	phosphate-binding protein	NA	NA	NA	NA	NA
AVD75287.1|1338612_1339917_-	23S rRNA methyltransferase	NA	NA	NA	NA	NA
AVD75288.1|1339917_1340691_-	inositol monophosphatase family protein	NA	NA	NA	NA	NA
AVD75289.1|1340680_1340959_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75290.1|1340958_1341360_-	regulatory protein Spx	NA	NA	NA	NA	NA
AVD75291.1|1341569_1342220_-	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
AVD75292.1|1342176_1342950_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
AVD75293.1|1342960_1343698_-	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA	NA
AVD75294.1|1343702_1344833_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AVD75295.1|1344916_1345306_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AVD75296.1|1345321_1345705_-	DUF948 domain-containing protein	NA	NA	NA	NA	NA
AVD75297.1|1345705_1346494_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AVD75298.1|1346486_1347437_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AVD75299.1|1347551_1347728_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AVD75300.1|1347867_1348575_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AVD76153.1|1348725_1349754_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVD75301.1|1350414_1350804_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	NA	NA	NA	NA
AVD76154.1|1350857_1351550_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75302.1|1352263_1352815_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVD75303.1|1353164_1353989_-	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	57.5	1.8e-74
AVD75304.1|1353985_1355446_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.3	1.1e-103
AVD75305.1|1355561_1356050_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75306.1|1356039_1356279_-	transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	49.1	6.2e-07
AVD75307.1|1356634_1357114_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75308.1|1359345_1359657_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75309.1|1359671_1360958_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	31.3	4.6e-40
AVD75310.1|1361319_1361532_+	hypothetical protein	NA	NA	NA	NA	NA
AVD75311.1|1361581_1361764_+	ApaLI family restriction endonuclease	NA	NA	NA	NA	NA
AVD75312.1|1361773_1362139_+	ApaLI family restriction endonuclease	NA	NA	NA	NA	NA
AVD75313.1|1362135_1363326_+	site-specific DNA-methyltransferase	NA	A0A0H3UZ66	Geobacillus_virus	37.4	7.0e-43
AVD75314.1|1363840_1364833_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVD75315.1|1364986_1366747_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.2	4.1e-23
AVD75316.1|1366730_1368452_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.7	8.4e-29
AVD75317.1|1368462_1369047_+	hypothetical protein	NA	NA	NA	NA	NA
AVD75318.1|1369046_1369742_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
AVD75319.1|1369729_1371094_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	4.3e-12
AVD76155.1|1371547_1371691_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75320.1|1372415_1372628_-|transposase	transposase	transposase	NA	NA	NA	NA
AVD75321.1|1372636_1373005_-|transposase	transposase	transposase	NA	NA	NA	NA
AVD75322.1|1372928_1373123_-|transposase	transposase	transposase	NA	NA	NA	NA
AVD75323.1|1373292_1373643_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AVD75324.1|1373623_1373809_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75325.1|1374112_1375675_-	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.8	4.9e-20
AVD75326.1|1375816_1376515_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVD75327.1|1376557_1377454_-	EamA family transporter	NA	NA	NA	NA	NA
AVD75328.1|1377462_1378398_-	serine hydrolase	NA	NA	NA	NA	NA
AVD75329.1|1378394_1379120_-	proteinase	NA	NA	NA	NA	NA
AVD75330.1|1379203_1379839_-|holin	1-alkyl-2-acetylglycerophosphocholine esterase	holin	A0A2K9L661	Tupanvirus	28.7	8.7e-08
AVD75331.1|1379840_1380668_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AVD75332.1|1380689_1381025_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
AVD75333.1|1381025_1381742_-	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	30.7	3.0e-25
AVD75334.1|1381733_1381931_+	hypothetical protein	NA	NA	NA	NA	NA
AVD75335.1|1381884_1382076_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75336.1|1382254_1382866_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
AVD75337.1|1382910_1383639_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
AVD75338.1|1383677_1384589_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
AVD75339.1|1384654_1384891_-	DUF4059 domain-containing protein	NA	NA	NA	NA	NA
AVD75340.1|1384956_1385700_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
AVD75341.1|1385699_1386500_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AVD75342.1|1386657_1387014_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
AVD75343.1|1387026_1387539_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
AVD75344.1|1387538_1388033_-	N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
>prophage 10
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	1454070	1532703	2221315	tRNA,portal,integrase,holin,terminase,capsid,protease,tail	Streptococcus_phage(85.48%)	87	1461566:1461597	1539738:1539769
AVD75405.1|1454070_1454820_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
AVD75406.1|1454873_1455233_-	RNA-binding protein	NA	NA	NA	NA	NA
AVD75407.1|1455234_1456635_-	Cof-type HAD-IIB family hydrolase	NA	A0A1V0S9I2	Catovirus	44.6	2.7e-25
AVD75408.1|1456929_1457169_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AVD75409.1|1457200_1457671_-	single-stranded DNA-binding protein	NA	A0A2H4J1H8	uncultured_Caudovirales_phage	67.7	2.4e-55
AVD75410.1|1457682_1457973_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
AVD75411.1|1459845_1461033_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVD76159.1|1461029_1461461_-	peptidase	NA	NA	NA	NA	NA
AVD75412.1|1461553_1461748_+	hypothetical protein	NA	NA	NA	NA	NA
1461566:1461597	attL	ATACTCTTCGAAAATCTCTTCAAACCACGTCA	NA	NA	NA	NA
AVD75413.1|1461838_1462387_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AVD75414.1|1462623_1467948_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
AVD75415.1|1468139_1469648_+	HTH domain-containing protein	NA	NA	NA	NA	NA
AVD75416.1|1469698_1470427_-	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	39.4	1.2e-40
AVD75417.1|1470505_1470685_-	DUF3953 domain-containing protein	NA	NA	NA	NA	NA
AVD75418.1|1470848_1472444_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75419.1|1472455_1472866_-	peptide deformylase	NA	A0A2I7R224	Vibrio_phage	32.2	1.3e-09
AVD75420.1|1472981_1473773_-	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA	NA
AVD75421.1|1473785_1476482_-	cation-translocating P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	28.6	8.1e-71
AVD75422.1|1476785_1477970_+	cation-efflux pump	NA	NA	NA	NA	NA
AVD75423.1|1478112_1479984_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	4.6e-57
AVD75424.1|1479980_1481180_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	31.7	5.2e-38
AVD75425.1|1481176_1481944_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
AVD75426.1|1482209_1483058_-	DegV domain-containing protein	NA	NA	NA	NA	NA
AVD75427.1|1483059_1483446_-	DUF1149 domain-containing protein	NA	NA	NA	NA	NA
AVD75428.1|1483507_1484860_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AVD75429.1|1484883_1485663_-	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
AVD75430.1|1485649_1486507_-	TIGR00159 family protein	NA	NA	NA	NA	NA
AVD75431.1|1486424_1486598_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75432.1|1486642_1487611_+	ferredoxin--NADP(+) reductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
AVD75433.1|1487737_1487965_+	hypothetical protein	NA	NA	NA	NA	NA
AVD75434.1|1487863_1488820_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q0R562	Streptococcus_phage	100.0	1.3e-145
AVD75435.1|1488823_1489156_-|holin	phage holin	holin	A0A1S5S9U3	Streptococcus_phage	100.0	1.9e-51
AVD75436.1|1489159_1489576_-|holin	holin	holin	Q0R564	Streptococcus_phage	100.0	8.4e-68
AVD75437.1|1489585_1489849_-	hypothetical protein	NA	Q0R565	Streptococcus_phage	100.0	1.0e-39
AVD75438.1|1489908_1491987_-	structural protein	NA	Q0R566	Streptococcus_phage	100.0	0.0e+00
AVD75439.1|1491997_1497025_-	hypothetical protein	NA	Q0R567	Streptococcus_phage	90.6	0.0e+00
AVD75440.1|1497026_1498541_-|tail	phage tail protein	tail	A0A1S5SEJ1	Streptococcus_phage	100.0	2.0e-300
AVD75441.1|1498537_1501819_-	tape measure domain-containing protein	NA	Q0R569	Streptococcus_phage	100.0	0.0e+00
AVD75442.1|1501811_1502381_-	hypothetical protein	NA	U4KJ63	Streptococcus_phage	100.0	8.4e-103
AVD75443.1|1502393_1502882_-	hypothetical protein	NA	Q0R571	Streptococcus_phage	100.0	4.4e-84
AVD75444.1|1502946_1503396_-|tail	phage tail protein	tail	A0A1S5SEC3	Streptococcus_phage	100.0	8.4e-82
AVD75445.1|1503392_1503800_-|capsid	capsid protein	capsid	A0A1S5SEE3	Streptococcus_phage	100.0	3.2e-72
AVD75446.1|1503799_1504144_-|capsid	capsid protein	capsid	Q94M41	Streptococcus_phage	100.0	3.8e-58
AVD75447.1|1504143_1504515_-|capsid	capsid protein	capsid	A0A1S5SDX7	Streptococcus_phage	100.0	8.0e-54
AVD75448.1|1504504_1504897_-	hypothetical protein	NA	A0A1C9LXX3	Streptococcus_phage	100.0	1.2e-63
AVD75449.1|1504939_1505173_-	hypothetical protein	NA	A0A1S5SEE1	Streptococcus_phage	100.0	6.8e-35
AVD75450.1|1505183_1506065_-|capsid	phage capsid protein	capsid	Q0R578	Streptococcus_phage	100.0	1.6e-161
AVD75451.1|1506082_1506646_-	scaffolding protein	NA	A0A1S5SEM4	Streptococcus_phage	100.0	9.9e-80
AVD75452.1|1506784_1507936_-|capsid	capsid protein	capsid	Q94M47	Streptococcus_phage	100.0	1.1e-218
AVD75453.1|1508138_1509707_-|portal	phage portal protein	portal	Q94M49	Streptococcus_phage	100.0	1.1e-301
AVD75454.1|1509719_1511030_-|terminase	PBSX family phage terminase large subunit	terminase	U4KJA9	Streptococcus_phage	100.0	1.8e-257
AVD75455.1|1511019_1511475_-	stress-induced protein	NA	A0A141DZJ9	Streptococcus_phage	100.0	5.0e-74
AVD75456.1|1511678_1512425_-	hypothetical protein	NA	Q8SBI3	Streptococcus_phage	100.0	4.4e-136
AVD75457.1|1512405_1513500_-	DUF4417 domain-containing protein	NA	A0A1S5S8J8	Streptococcus_phage	100.0	1.8e-202
AVD75458.1|1513565_1513958_-	hypothetical protein	NA	A0A1S5SED1	Streptococcus_phage	100.0	7.1e-69
AVD75459.1|1513954_1514197_-	DUF3310 domain-containing protein	NA	Q0R588	Streptococcus_phage	100.0	5.6e-40
AVD75460.1|1514256_1514676_-	hypothetical protein	NA	A0A1S5SDX2	Streptococcus_phage	100.0	1.1e-75
AVD75461.1|1514863_1515151_-	hypothetical protein	NA	A0A1S5SE60	Streptococcus_phage	100.0	8.6e-48
AVD75462.1|1515150_1515648_-	DUF1642 domain-containing protein	NA	Q0R592	Streptococcus_phage	100.0	3.4e-92
AVD76160.1|1515649_1515964_-	hypothetical protein	NA	Q0R593	Streptococcus_phage	100.0	3.8e-57
AVD75463.1|1516015_1516222_-	hypothetical protein	NA	A0A1S5SDU5	Streptococcus_phage	100.0	1.1e-31
AVD75464.1|1516223_1516625_-	hypothetical protein	NA	U4KJA0	Streptococcus_phage	100.0	1.9e-72
AVD75465.1|1516635_1516848_-	hypothetical protein	NA	A0A1S5SEA6	Streptococcus_phage	100.0	1.7e-32
AVD75466.1|1516864_1517602_-	hypothetical protein	NA	Q0R597	Streptococcus_phage	100.0	1.6e-133
AVD75467.1|1517603_1518038_-	hypothetical protein	NA	U4KJ68	Streptococcus_phage	100.0	2.1e-66
AVD75468.1|1518091_1518295_-	hypothetical protein	NA	U4KJ79	Streptococcus_phage	100.0	4.4e-30
AVD75469.1|1518329_1519487_-	DNA (cytosine-5-)-methyltransferase	NA	Q0R5A1	Streptococcus_phage	100.0	2.7e-225
AVD75470.1|1519512_1520058_-	single-stranded DNA-binding protein	NA	A0A1S5SEC1	Streptococcus_phage	99.4	8.7e-73
AVD75471.1|1520245_1521238_-	DUF1351 domain-containing protein	NA	A0A1S5SEK4	Streptococcus_phage	100.0	8.7e-180
AVD75472.1|1521240_1521948_-	single-stranded DNA-binding protein	NA	Q0R5A5	Streptococcus_phage	100.0	6.7e-118
AVD76161.1|1521953_1522406_-	hypothetical protein	NA	A0A1S5SDR7	Streptococcus_phage	100.0	1.1e-81
AVD75473.1|1522457_1522982_-	hypothetical protein	NA	Q0R5A7	Streptococcus_phage	100.0	4.4e-90
AVD75474.1|1523062_1523329_-	hypothetical protein	NA	A0A1C9LX40	Streptococcus_phage	100.0	1.1e-41
AVD75475.1|1523560_1523824_-	transcriptional regulator	NA	A0A1S5SDY1	Streptococcus_phage	100.0	2.6e-43
AVD75476.1|1524001_1524193_-	DNA-binding protein	NA	A0A1S5SDV2	Streptococcus_phage	100.0	4.6e-29
AVD75477.1|1524489_1524852_+	XRE family transcriptional regulator	NA	A0A1S5SDY5	Streptococcus_phage	100.0	1.7e-61
AVD75478.1|1524873_1525254_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SE39	Streptococcus_phage	100.0	4.2e-66
AVD75479.1|1525267_1525618_+	hypothetical protein	NA	Q9MBY8	Streptococcus_phage	100.0	7.3e-57
AVD75480.1|1525736_1526864_+|integrase	site-specific integrase	integrase	Q0R5B4	Streptococcus_phage	100.0	1.0e-208
AVD75481.1|1526951_1527863_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	100.0	2.3e-155
AVD75482.1|1527859_1528837_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
AVD75483.1|1528833_1529724_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
AVD75484.1|1529775_1530156_-	RidA family protein	NA	NA	NA	NA	NA
AVD75485.1|1530166_1530754_-	GTP-binding protein	NA	NA	NA	NA	NA
AVD75486.1|1530762_1531995_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	6.4e-132
AVD75487.1|1532026_1532197_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75488.1|1532196_1532703_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.8	4.6e-28
1539738:1539769	attR	TGACGTGGTTTGAAGAGATTTTCGAAGAGTAT	NA	NA	NA	NA
>prophage 11
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	2065197	2110451	2221315	holin,transposase,protease,tRNA	Streptococcus_phage(44.44%)	44	NA	NA
AVD75972.1|2065197_2066454_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.5	1.5e-75
AVD75973.1|2066531_2068595_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	26.2	1.3e-52
AVD75974.1|2068596_2068875_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75975.1|2069026_2069875_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AVD75976.1|2070213_2070420_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75977.1|2070496_2071069_+	hypothetical protein	NA	NA	NA	NA	NA
AVD76180.1|2072026_2072128_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
AVD75978.1|2072112_2074371_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
AVD75979.1|2074396_2075914_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
AVD75980.1|2076463_2077735_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVD75981.1|2077830_2079138_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
AVD75982.1|2079139_2079982_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
AVD76181.1|2079985_2080117_+	UDP pyrophosphate phosphatase	NA	NA	NA	NA	NA
AVD75983.1|2080234_2081035_+	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
AVD75984.1|2081044_2082031_+	transcriptional regulator	NA	NA	NA	NA	NA
AVD75985.1|2082215_2083472_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.3	1.5e-224
AVD75986.1|2084194_2085136_-	YitT family protein	NA	NA	NA	NA	NA
AVD75987.1|2085113_2086877_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	5.0e-13
AVD75988.1|2087273_2087504_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75989.1|2087521_2088163_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVD75990.1|2088174_2088903_-	DUF3169 domain-containing protein	NA	NA	NA	NA	NA
AVD75991.1|2088899_2089097_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75992.1|2089096_2089303_-	transcriptional regulator	NA	NA	NA	NA	NA
AVD75993.1|2089312_2089777_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75994.1|2089776_2089968_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75995.1|2089964_2091254_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AVD75996.1|2091331_2092579_-	transporter	NA	NA	NA	NA	NA
AVD75997.1|2092795_2094142_+|transposase	IS1380 family transposase ISSpn5	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
AVD75998.1|2094206_2094527_-	hypothetical protein	NA	NA	NA	NA	NA
AVD75999.1|2094477_2095329_-	MutR family transcriptional regulator	NA	NA	NA	NA	NA
AVD76000.1|2095381_2096335_-|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	34.9	8.1e-34
AVD76001.1|2096697_2097039_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
AVD76002.1|2097247_2098951_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AVD76003.1|2099183_2100116_-	transketolase	NA	NA	NA	NA	NA
AVD76004.1|2100112_2100970_-	transketolase	NA	A0A2K9L6P9	Tupanvirus	31.2	5.4e-29
AVD76005.1|2100973_2102320_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
AVD76006.1|2102332_2102617_-	PTS lactose transporter subunit IIB	NA	NA	NA	NA	NA
AVD76007.1|2102620_2104651_-	PRD domain-containing protein	NA	NA	NA	NA	NA
AVD76008.1|2104841_2105849_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
AVD76009.1|2105851_2106052_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
AVD76010.1|2106203_2106386_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AVD76011.1|2106401_2106551_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AVD76012.1|2107132_2108389_+|transposase	ISL3-like element IS1167A family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.0	4.4e-237
AVD76013.1|2108465_2110451_-|holin	choline-binding protein A	holin	NA	NA	NA	NA
>prophage 12
CP026670	Streptococcus pneumoniae strain 335 chromosome, complete genome	2221315	2199157	2207912	2221315		Bacillus_phage(33.33%)	9	NA	NA
AVD76089.1|2199157_2199997_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
AVD76090.1|2199981_2200809_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
AVD76091.1|2200805_2201351_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVD76092.1|2201361_2202192_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AVD76093.1|2202224_2203508_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
AVD76094.1|2203504_2204755_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	4.6e-93
AVD76095.1|2204913_2205282_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
AVD76096.1|2205284_2206382_+	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
AVD76097.1|2206433_2207912_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
