assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	2	302848-302985	1	PILER-CR	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	GTCTTTTAAAGGCCTTCAAAAAGACAAAAAGGA	33	0	0	NA	NA	NA	2	2	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|68aa|up_9|CP026649.1_291936_292140_-,NA|63aa|up_3|CP026649.1_298837_299026_+,NA|60aa|down_3|CP026649.1_309111_309291_+,NA|75aa|down_6|CP026649.1_310835_311060_+	NA|68aa|up_9|CP026649.1_291936_292140_-	NA	NA|240aa|up_8|CP026649.1_292232_292952_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|340aa|up_7|CP026649.1_293150_294170_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|415aa|up_6|CP026649.1_294357_295602_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|258aa|up_5|CP026649.1_295579_296353_+	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional	NA|188aa|up_4|CP026649.1_298121_298685_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|63aa|up_3|CP026649.1_298837_299026_+	NA	NA|135aa|up_2|CP026649.1_299411_299816_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|353aa|up_1|CP026649.1_299858_300917_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|473aa|up_0|CP026649.1_301300_302719_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|468aa|down_0|CP026649.1_305762_307166_-	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein	NA|102aa|down_1|CP026649.1_307335_307641_+	TIGR04104, hypothetical_protein, cxxc_20_cxxc protein	NA|242aa|down_2|CP026649.1_308162_308888_+	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin)	NA|60aa|down_3|CP026649.1_309111_309291_+	NA	NA|253aa|down_4|CP026649.1_309287_310046_+	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|247aa|down_5|CP026649.1_310052_310793_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|75aa|down_6|CP026649.1_310835_311060_+	NA	NA|209aa|down_7|CP026649.1_311079_311706_+	PRK06718, PRK06718, NAD(P)-binding protein	NA|177aa|down_8|CP026649.1_311838_312369_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|368aa|down_9|CP026649.1_313977_315081_-	PRK09423, gldA, glycerol dehydrogenase; Provisional
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	3	430615-430959	1	CRT	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	TTTGTCCTTTTGACAGGTTCAAAAGGACATTTC	33	2	2	430700-430718|430908-430926	CP026649.1_91248-91266|CP026649.1_1944155-1944137	NA	6	6	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|149aa|up_8|CP026649.1_421572_422019_+,NA|74aa|up_5|CP026649.1_423732_423954_-,NA|158aa|up_3|CP026649.1_425807_426281_+,NA|308aa|up_2|CP026649.1_426229_427153_-,NA|90aa|down_3|CP026649.1_434804_435074_+,NA|105aa|down_6|CP026649.1_437283_437598_+	NA|227aa|up_9|CP026649.1_418725_419406_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|149aa|up_8|CP026649.1_421572_422019_+	NA	NA|235aa|up_7|CP026649.1_422072_422777_-	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein	NA|179aa|up_6|CP026649.1_423129_423666_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|74aa|up_5|CP026649.1_423732_423954_-	NA	NA|373aa|up_4|CP026649.1_424545_425664_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|158aa|up_3|CP026649.1_425807_426281_+	NA	NA|308aa|up_2|CP026649.1_426229_427153_-	NA	NA|341aa|up_1|CP026649.1_427482_428505_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|461aa|up_0|CP026649.1_429012_430395_+	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|607aa|down_0|CP026649.1_431578_433399_+	pfam13520, AA_permease_2, Amino acid permease	NA|279aa|down_1|CP026649.1_433573_434410_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|62aa|down_2|CP026649.1_434584_434770_+	PRK14861, tatA, twin arginine translocase protein A; Provisional	NA|90aa|down_3|CP026649.1_434804_435074_+	NA	NA|342aa|down_4|CP026649.1_435159_436185_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|243aa|down_5|CP026649.1_436497_437226_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|105aa|down_6|CP026649.1_437283_437598_+	NA	NA|272aa|down_7|CP026649.1_437905_438721_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|218aa|down_8|CP026649.1_438786_439440_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|236aa|down_9|CP026649.1_439465_440173_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	4	574894-575854	2,2	CRISPRCasFinder,CRT	no	cas5,cas8c,cas7	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Type I-U, Type I-U?,Type I-C	GTCACACTCCTCGTGAGTGTGTGAATTGAAAT,GTCACACTCCTCGTGAGTGTGTGAATTGAAATN	32,33	0	0	NA	NA	NA:NA	14,14	14	TypeI-U,TypeI-U?,TypeI-C	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|72aa|up_3|CP026649.1_568392_568608_+,NA|173aa|down_0|CP026649.1_576182_576701_-,NA|122aa|down_4|CP026649.1_583355_583721_+	NA|365aa|up_9|CP026649.1_561616_562711_+	pfam06032, DUF917, Protein of unknown function (DUF917)	NA|526aa|up_8|CP026649.1_562710_564288_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|328aa|up_7|CP026649.1_564457_565441_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|119aa|up_6|CP026649.1_565443_565800_-	pfam04237, YjbR, YjbR	NA|444aa|up_5|CP026649.1_566840_568172_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|71aa|up_4|CP026649.1_568187_568400_+	pfam11213, DUF3006, Protein of unknown function (DUF3006)	NA|72aa|up_3|CP026649.1_568392_568608_+	NA	cas5|216aa|up_2|CP026649.1_571268_571916_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|559aa|up_1|CP026649.1_571916_573593_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|308aa|up_0|CP026649.1_573596_574520_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|173aa|down_0|CP026649.1_576182_576701_-	NA	NA|552aa|down_1|CP026649.1_577392_579048_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|739aa|down_2|CP026649.1_579180_581397_-	pfam17936, Big_6, Bacterial Ig domain	NA|323aa|down_3|CP026649.1_581874_582843_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|122aa|down_4|CP026649.1_583355_583721_+	NA	NA|306aa|down_5|CP026649.1_583849_584767_-	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|313aa|down_6|CP026649.1_584963_585902_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|76aa|down_7|CP026649.1_585898_586126_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|108aa|down_8|CP026649.1_586500_586824_+	pfam12986, DUF3870, Domain of unknown function (DUF3870)	NA|404aa|down_9|CP026649.1_587066_588278_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	5	624195-624286	3	CRISPRCasFinder	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	TTCCTTTTCTGGTGTGGGCCGTT	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|98aa|up_3|CP026649.1_620615_620909_-,NA	NA|218aa|up_9|CP026649.1_615824_616478_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|382aa|up_8|CP026649.1_616489_617635_-	TIGR01186, Choline_transport_ATP-binding_protein_OpuBA, glycine betaine/L-proline transport ATP binding subunit	NA|182aa|up_7|CP026649.1_617832_618378_+	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|187aa|up_6|CP026649.1_618392_618953_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|277aa|up_5|CP026649.1_619226_620057_-	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|202aa|up_4|CP026649.1_620023_620629_-	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|98aa|up_3|CP026649.1_620615_620909_-	NA	NA|191aa|up_2|CP026649.1_621059_621632_-	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain	NA|272aa|up_1|CP026649.1_621935_622751_+	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|239aa|up_0|CP026649.1_623374_624091_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|493aa|down_0|CP026649.1_624436_625915_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|526aa|down_1|CP026649.1_626065_627643_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|325aa|down_2|CP026649.1_627587_628562_+	COG5464, COG5464, Uncharacterized conserved protein [Function unknown]	NA|361aa|down_3|CP026649.1_629057_630140_-	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|366aa|down_4|CP026649.1_630386_631484_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|284aa|down_5|CP026649.1_631480_632332_-	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|531aa|down_6|CP026649.1_632300_633893_-	PRK08071, PRK08071, L-aspartate oxidase; Provisional	NA|382aa|down_7|CP026649.1_633976_635122_+	PRK02948, PRK02948, IscS subfamily cysteine desulfurase	NA|176aa|down_8|CP026649.1_635779_636307_+	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|263aa|down_9|CP026649.1_636986_637775_+	pfam01226, Form_Nir_trans, Formate/nitrite transporter
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	6	975900-976178	3	CRT	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	GATGAAAGACANNNNAAAG	19	0	0	NA	NA	NA	5	5	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA,NA	NA|269aa|up_9|CP026649.1_962912_963719_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|1199aa|up_8|CP026649.1_963848_967445_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|382aa|up_7|CP026649.1_967744_968890_+	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|117aa|up_6|CP026649.1_969008_969359_+	COG1950, COG1950, Predicted membrane protein [Function unknown]	NA|318aa|up_5|CP026649.1_969763_970717_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|272aa|up_4|CP026649.1_970780_971596_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|218aa|up_3|CP026649.1_971691_972345_+	PRK13288, PRK13288, pyrophosphatase PpaX; Provisional	NA|172aa|up_2|CP026649.1_972341_972857_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|504aa|up_1|CP026649.1_972956_974468_+	sd00006, TPR, Tetratricopeptide repeat	NA|316aa|up_0|CP026649.1_974650_975598_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|153aa|down_0|CP026649.1_976387_976846_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|297aa|down_1|CP026649.1_976882_977773_+	PRK05416, PRK05416, RNase adapter RapZ	NA|327aa|down_2|CP026649.1_977769_978750_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|318aa|down_3|CP026649.1_978830_979784_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|90aa|down_4|CP026649.1_979894_980164_+	PRK13782, PRK13782, HPr family phosphocarrier protein	NA|195aa|down_5|CP026649.1_980250_980835_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|309aa|down_6|CP026649.1_981492_982419_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|92aa|down_7|CP026649.1_982415_982691_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|463aa|down_8|CP026649.1_983161_984550_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|69aa|down_9|CP026649.1_984605_984812_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	7	1003692-1003784	4	CRISPRCasFinder	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	ACACGGTGGTGAAACGCACAAGCA	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA,NA|31aa|down_3|CP026649.1_1006366_1006459_+,NA|63aa|down_7|CP026649.1_1008790_1008979_+	NA|378aa|up_9|CP026649.1_992677_993811_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|116aa|up_8|CP026649.1_994004_994352_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|289aa|up_7|CP026649.1_994469_995336_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|261aa|up_6|CP026649.1_995478_996261_+	PRK07659, PRK07659, enoyl-CoA hydratase; Provisional	NA|62aa|up_5|CP026649.1_996265_996451_+	pfam14120, YhzD, YhzD-like protein	NA|260aa|up_4|CP026649.1_996511_997291_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|310aa|up_3|CP026649.1_997485_998415_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|285aa|up_2|CP026649.1_998427_999282_+	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|424aa|up_1|CP026649.1_999403_1000675_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|996aa|up_0|CP026649.1_1000671_1003659_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|315aa|down_0|CP026649.1_1003870_1004815_+	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional	NA|65aa|down_1|CP026649.1_1004951_1005146_+	pfam14147, Spore_YhaL, Sporulation protein YhaL	NA|291aa|down_2|CP026649.1_1005194_1006067_-	PRK03002, prsA, peptidylprolyl isomerase PrsA	NA|31aa|down_3|CP026649.1_1006366_1006459_+	NA	NA|110aa|down_4|CP026649.1_1007008_1007338_+	pfam08963, DUF1878, Protein of unknown function (DUF1878)	NA|189aa|down_5|CP026649.1_1007352_1007919_-	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr	NA|121aa|down_6|CP026649.1_1008063_1008426_-	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|63aa|down_7|CP026649.1_1008790_1008979_+	NA	NA|175aa|down_8|CP026649.1_1009023_1009548_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|138aa|down_9|CP026649.1_1009780_1010194_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	8	2251286-2251875	4	CRT	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	CGCTTCCTTAACNTAGAC	18	0	0	NA	NA	NA	11	11	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|142aa|up_8|CP026649.1_2239638_2240064_-,NA|66aa|up_2|CP026649.1_2249019_2249217_-,NA	NA|71aa|up_9|CP026649.1_2239399_2239612_+	PRK02955, PRK02955, small acid-soluble spore protein SspI; Provisional	NA|142aa|up_8|CP026649.1_2239638_2240064_-	NA	NA|454aa|up_7|CP026649.1_2240065_2241427_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|298aa|up_6|CP026649.1_2243940_2244834_-	pfam14358, DUF4405, Domain of unknown function (DUF4405)	NA|113aa|up_5|CP026649.1_2245341_2245680_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|232aa|up_4|CP026649.1_2247870_2248566_-	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|112aa|up_3|CP026649.1_2248558_2248894_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|66aa|up_2|CP026649.1_2249019_2249217_-	NA	NA|222aa|up_1|CP026649.1_2249502_2250168_+	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional	NA|311aa|up_0|CP026649.1_2250216_2251149_+	TIGR00745, Putative_2-dehydropantoate_2-reductase, 2-dehydropantoate 2-reductase	NA|185aa|down_0|CP026649.1_2252364_2252919_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|443aa|down_1|CP026649.1_2253167_2254496_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|329aa|down_2|CP026649.1_2254646_2255633_-	cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|164aa|down_3|CP026649.1_2255647_2256139_-	TIGR03645, glyox_marine, lactoylglutathione lyase family protein	NA|471aa|down_4|CP026649.1_2256565_2257978_-	pfam04932, Wzy_C, O-Antigen ligase	NA|151aa|down_5|CP026649.1_2258069_2258522_-	PRK00601, dut, dUTP diphosphatase	NA|118aa|down_6|CP026649.1_2258852_2259206_-	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|66aa|down_7|CP026649.1_2259239_2259437_-	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|182aa|down_8|CP026649.1_2259460_2260006_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|418aa|down_9|CP026649.1_2260568_2261822_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	9	2398925-2399005	5	CRISPRCasFinder	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	CTTTGCGAGATCCAATTCGCAAATGG	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA,NA|83aa|down_4|CP026649.1_2406869_2407118_+,NA|43aa|down_7|CP026649.1_2408084_2408213_+	NA|365aa|up_9|CP026649.1_2386091_2387186_-	pfam10776, DUF2600, Protein of unknown function (DUF2600)	NA|269aa|up_8|CP026649.1_2387196_2388003_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|172aa|up_7|CP026649.1_2388161_2388677_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|633aa|up_6|CP026649.1_2389047_2390946_-	COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	NA|404aa|up_5|CP026649.1_2391176_2392388_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|530aa|up_4|CP026649.1_2392852_2394442_+	pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxykinase	NA|130aa|up_3|CP026649.1_2394592_2394982_-	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	NA|351aa|up_2|CP026649.1_2395462_2396515_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|181aa|up_1|CP026649.1_2396521_2397064_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|512aa|up_0|CP026649.1_2397281_2398817_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|472aa|down_0|CP026649.1_2400737_2402153_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|257aa|down_1|CP026649.1_2404141_2404912_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|269aa|down_2|CP026649.1_2404898_2405705_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|155aa|down_3|CP026649.1_2406236_2406701_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD	NA|83aa|down_4|CP026649.1_2406869_2407118_+	NA	NA|150aa|down_5|CP026649.1_2407190_2407640_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|79aa|down_6|CP026649.1_2407756_2407993_+	PRK00041, PRK00041, hypothetical protein; Validated	NA|43aa|down_7|CP026649.1_2408084_2408213_+	NA	NA|297aa|down_8|CP026649.1_2408332_2409223_+	cd01017, AdcA, Metal binding protein AdcA	NA|53aa|down_9|CP026649.1_2409285_2409444_+	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	10	2419374-2419474	6	CRISPRCasFinder	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	GCGGGTGATGGGAATCGAACCCA	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|43aa|up_8|CP026649.1_2408084_2408213_+,NA|62aa|down_0|CP026649.1_2426759_2426945_-,NA|60aa|down_4|CP026649.1_2431864_2432044_-,NA|82aa|down_5|CP026649.1_2432046_2432292_-	NA|79aa|up_9|CP026649.1_2407756_2407993_+	PRK00041, PRK00041, hypothetical protein; Validated	NA|43aa|up_8|CP026649.1_2408084_2408213_+	NA	NA|297aa|up_7|CP026649.1_2408332_2409223_+	cd01017, AdcA, Metal binding protein AdcA	NA|53aa|up_6|CP026649.1_2409285_2409444_+	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|368aa|up_5|CP026649.1_2409814_2410918_-	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|273aa|up_4|CP026649.1_2412945_2413764_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|268aa|up_3|CP026649.1_2413804_2414608_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|582aa|up_2|CP026649.1_2414604_2416350_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|445aa|up_1|CP026649.1_2416351_2417686_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|308aa|up_0|CP026649.1_2417951_2418875_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|62aa|down_0|CP026649.1_2426759_2426945_-	NA	NA|388aa|down_1|CP026649.1_2427234_2428398_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|217aa|down_2|CP026649.1_2428725_2429376_-	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group	NA|730aa|down_3|CP026649.1_2429377_2431567_-	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein	NA|60aa|down_4|CP026649.1_2431864_2432044_-	NA	NA|82aa|down_5|CP026649.1_2432046_2432292_-	NA	NA|302aa|down_6|CP026649.1_2432344_2433250_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|230aa|down_7|CP026649.1_2433340_2434030_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|375aa|down_8|CP026649.1_2434165_2435290_-	pfam07854, DUF1646, Protein of unknown function (DUF1646)	NA|129aa|down_9|CP026649.1_2435799_2436186_-	cd06174, MFS, Major Facilitator Superfamily
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	11	2761380-2761471	7	CRISPRCasFinder	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	CAAATAATTACCTGTTTAAGAAGAAC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|89aa|up_6|CP026649.1_2752707_2752974_-,NA|91aa|up_2|CP026649.1_2757307_2757580_-,NA	NA|103aa|up_9|CP026649.1_2750572_2750881_-	pfam14118, YfzA, YfzA-like protein	NA|213aa|up_8|CP026649.1_2750915_2751554_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|292aa|up_7|CP026649.1_2751531_2752407_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|89aa|up_6|CP026649.1_2752707_2752974_-	NA	NA|53aa|up_5|CP026649.1_2753709_2753868_-	pfam08176, SspK, Small acid-soluble spore protein K family	NA|327aa|up_4|CP026649.1_2753954_2754935_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|373aa|up_3|CP026649.1_2755113_2756232_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|91aa|up_2|CP026649.1_2757307_2757580_-	NA	NA|106aa|up_1|CP026649.1_2760063_2760381_-	pfam08838, DUF1811, Protein of unknown function (DUF1811)	NA|272aa|up_0|CP026649.1_2760361_2761177_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|61aa|down_0|CP026649.1_2761532_2761715_+	pfam14151, YfhD, YfhD-like protein	NA|264aa|down_1|CP026649.1_2761973_2762765_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|92aa|down_2|CP026649.1_2762757_2763033_-	COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism]	NA|402aa|down_3|CP026649.1_2763025_2764231_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|475aa|down_4|CP026649.1_2764208_2765633_-	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA|342aa|down_5|CP026649.1_2765633_2766659_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|200aa|down_6|CP026649.1_2766642_2767242_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|461aa|down_7|CP026649.1_2767222_2768605_-	PRK13570, PRK13570, anthranilate synthase component I; Provisional	NA|394aa|down_8|CP026649.1_2769587_2770769_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|228aa|down_9|CP026649.1_2770765_2771449_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	12	2905353-2908949	5,2,8	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	54,53,53	54	TypeI-U,TypeI-U?,TypeI-C	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|203aa|up_7|CP026649.1_2894501_2895110_+,NA|64aa|down_7|CP026649.1_2917335_2917527_-	NA|230aa|up_9|CP026649.1_2890194_2890884_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|512aa|up_8|CP026649.1_2892438_2893974_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|203aa|up_7|CP026649.1_2894501_2895110_+	NA	NA|141aa|up_6|CP026649.1_2895134_2895557_+	COG1615, COG1615, Uncharacterized conserved protein [Function unknown]	NA|438aa|up_5|CP026649.1_2896308_2897622_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|305aa|up_4|CP026649.1_2898147_2899062_-	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|382aa|up_3|CP026649.1_2899860_2901006_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|434aa|up_2|CP026649.1_2901382_2902684_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|208aa|up_1|CP026649.1_2903343_2903967_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|140aa|up_0|CP026649.1_2904735_2905155_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas2|97aa|down_0|CP026649.1_2909117_2909408_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|CP026649.1_2909418_2910450_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|CP026649.1_2910446_2911103_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|287aa|down_3|CP026649.1_2911092_2911953_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|627aa|down_4|CP026649.1_2911976_2913857_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_5|CP026649.1_2913857_2914577_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|809aa|down_6|CP026649.1_2914774_2917201_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|64aa|down_7|CP026649.1_2917335_2917527_-	NA	NA|1080aa|down_8|CP026649.1_2917671_2920911_-	pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated	NA|472aa|down_9|CP026649.1_2921288_2922704_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)
GCA_002946455.1_ASM294645v1	CP026649	Bacillus coagulans strain R11 chromosome, complete genome	13	3575886-3575976	9	CRISPRCasFinder	no		RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	Orphan	CCATATAATAAAAAAGCACTCGA	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas14j,cas5,cas8c,cas7,DinG,casR,cas3,DEDDh,csa3,cas2,cas1,cas4	NA|66aa|up_5|CP026649.1_3568328_3568526_+,NA|85aa|down_0|CP026649.1_3576287_3576542_-	NA|119aa|up_9|CP026649.1_3565128_3565485_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|111aa|up_8|CP026649.1_3565468_3565801_+	pfam06304, DUF1048, Protein of unknown function (DUF1048)	NA|117aa|up_7|CP026649.1_3565834_3566185_+	COG4817, COG4817, DNA-binding ferritin-like protein (Dps family) [General function prediction only]	NA|89aa|up_6|CP026649.1_3566181_3566448_+	pfam06304, DUF1048, Protein of unknown function (DUF1048)	NA|66aa|up_5|CP026649.1_3568328_3568526_+	NA	NA|421aa|up_4|CP026649.1_3568685_3569948_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|265aa|up_3|CP026649.1_3570165_3570960_-	COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	NA|684aa|up_2|CP026649.1_3570976_3573028_-	pfam07435, YycH, YycH protein	NA|607aa|up_1|CP026649.1_3573024_3574845_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|237aa|up_0|CP026649.1_3574849_3575560_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|85aa|down_0|CP026649.1_3576287_3576542_-	NA	NA|430aa|down_1|CP026649.1_3576538_3577828_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|452aa|down_2|CP026649.1_3578002_3579358_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|148aa|down_3|CP026649.1_3579577_3580021_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|658aa|down_4|CP026649.1_3580017_3581991_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|316aa|down_5|CP026649.1_3582026_3582974_-	pfam09991, DUF2232, Predicted membrane protein (DUF2232)	NA|80aa|down_6|CP026649.1_3583124_3583364_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|165aa|down_7|CP026649.1_3583408_3583903_-	PRK06751, PRK06751, single-stranded DNA-binding protein; Provisional	NA|96aa|down_8|CP026649.1_3583964_3584252_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|157aa|down_9|CP026649.1_3584505_3584976_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional
