The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	285637	301823	4119929		Synechococcus_phage(23.08%)	14	NA	NA
AVB59275.1|285637_286150_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AVB59276.1|286599_287076_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AVB59277.1|287081_287780_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVB59278.1|287791_289159_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AVB59279.1|289152_290229_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AVB59280.1|290222_290816_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AVB59281.1|290808_292341_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVB59282.1|292351_293602_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVB59283.1|293626_297433_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AVB59284.1|297638_298511_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AVB59285.1|298619_299501_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AVB59286.1|299537_300095_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AVB59287.1|300132_301116_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AVB59288.1|301154_301823_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	466581	473210	4119929	integrase,transposase	Clostridium_phage(33.33%)	7	457919:457934	478991:479006
457919:457934	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
AVB59443.1|466581_467937_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AVB59444.1|468018_468234_-|integrase	integrase	integrase	A0A0A8WIE1	Clostridium_phage	68.1	7.0e-10
AVB59445.1|468459_469494_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AVB59446.1|469580_469784_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AVB59447.1|469954_471115_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AVB59448.1|471645_472545_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AVB59449.1|472538_473210_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
478991:479006	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 3
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	588696	659411	4119929	tRNA,coat,protease,transposase	Streptococcus_phage(33.33%)	56	NA	NA
AVB59540.1|588696_589413_+|protease	protease PrsW	protease	NA	NA	NA	NA
AVB59541.1|589491_590802_+	methylase	NA	NA	NA	NA	NA
AVB59542.1|590901_591438_+	signal peptidase I	NA	NA	NA	NA	NA
AVB59543.1|591603_592140_+	signal peptidase I	NA	NA	NA	NA	NA
AVB59544.1|592149_592905_+	endonuclease	NA	NA	NA	NA	NA
AVB59545.1|592978_594646_+	nucleoside kinase	NA	NA	NA	NA	NA
AVB59546.1|595210_596140_+	glutaminase	NA	NA	NA	NA	NA
AVB59547.1|596237_596801_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVB59548.1|597288_598125_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
AVB59549.1|598376_599372_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVB59550.1|599628_600033_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVB59551.1|600193_600385_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59552.1|601032_601947_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVB59553.1|602052_604290_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
AVB62592.1|604921_605539_+	endonuclease III	NA	NA	NA	NA	NA
AVB59554.1|605732_606203_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVB59555.1|606238_607087_+	DegV family protein	NA	NA	NA	NA	NA
AVB59556.1|607459_608464_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB59557.1|608588_609701_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB59558.1|610123_610885_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59559.1|610887_611706_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59560.1|611885_612488_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVB59561.1|613350_615270_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AVB62593.1|616699_616849_-	hypothetical protein	NA	NA	NA	NA	NA
AVB59562.1|617205_618324_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
AVB59563.1|619321_620359_-	hypothetical protein	NA	NA	NA	NA	NA
AVB59564.1|620351_621038_-	hypothetical protein	NA	NA	NA	NA	NA
AVB59565.1|621049_621370_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB59566.1|621730_623071_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AVB59567.1|623748_624318_-	hydrolase	NA	NA	NA	NA	NA
AVB59568.1|624478_625729_-	MFS transporter	NA	NA	NA	NA	NA
AVB59569.1|626020_626608_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB59570.1|626929_628390_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVB59571.1|628763_629369_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB59572.1|629371_631939_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AVB59573.1|631931_632096_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59574.1|633204_633480_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59575.1|633499_633787_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59576.1|635341_636451_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AVB59577.1|636515_638639_+	ATP-binding protein	NA	NA	NA	NA	NA
AVB59578.1|638653_643864_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59579.1|644088_646188_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AVB59580.1|646230_646626_-	hypothetical protein	NA	NA	NA	NA	NA
AVB59581.1|647686_647875_+	hypothetical protein	NA	NA	NA	NA	NA
AVB59582.1|648059_648500_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB59583.1|648835_650149_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AVB59584.1|650166_650703_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AVB59585.1|651221_651443_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB59586.1|651442_651706_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB59587.1|651767_652340_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB59588.1|653157_653691_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
AVB59589.1|653915_654095_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVB62594.1|654701_654950_-	hypothetical protein	NA	NA	NA	NA	NA
AVB59590.1|655797_656211_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVB59591.1|656285_656795_+	GrpB family protein	NA	NA	NA	NA	NA
AVB59592.1|658301_659411_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 4
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	1403062	1465961	4119929	protease,plate,tail,tRNA,portal	Clostridium_phage(46.15%)	61	NA	NA
AVB60228.1|1403062_1403797_+|protease	Clp protease	protease	NA	NA	NA	NA
AVB60229.1|1403919_1406331_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVB60230.1|1406333_1407392_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVB60231.1|1407385_1408720_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVB60232.1|1408706_1409249_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVB60233.1|1409536_1410583_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AVB62612.1|1410758_1412300_+	ribonuclease Y	NA	NA	NA	NA	NA
AVB60234.1|1412934_1414716_+	DNA helicase	NA	NA	NA	NA	NA
AVB60235.1|1414797_1415328_-	signal peptidase I	NA	NA	NA	NA	NA
AVB60236.1|1415367_1416192_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AVB60237.1|1416448_1417357_+	recombinase	NA	NA	NA	NA	NA
AVB60238.1|1417500_1418946_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVB60239.1|1419256_1419709_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB60240.1|1420121_1421699_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AVB60241.1|1421857_1422610_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVB62613.1|1422748_1424089_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AVB60242.1|1424200_1425397_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVB60243.1|1425781_1426732_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVB60244.1|1426892_1427645_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
AVB60245.1|1427736_1428513_-	exonuclease	NA	NA	NA	NA	NA
AVB60246.1|1428827_1430726_+	glutamine synthetase	NA	NA	NA	NA	NA
AVB62614.1|1430853_1431975_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AVB60247.1|1432173_1432506_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB60248.1|1432492_1433551_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVB60249.1|1433543_1434614_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60250.1|1434715_1435252_+	lipoprotein	NA	NA	NA	NA	NA
AVB60251.1|1435368_1436076_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
AVB60252.1|1436077_1436794_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVB60253.1|1436795_1437554_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVB60254.1|1437697_1439086_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVB60255.1|1439161_1439983_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVB60256.1|1440233_1441388_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVB60257.1|1441570_1441771_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVB60258.1|1442191_1442620_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVB60259.1|1442762_1443518_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVB60260.1|1443638_1444055_-	hypothetical protein	NA	NA	NA	NA	NA
AVB60261.1|1444218_1444725_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AVB60262.1|1444806_1445127_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AVB60263.1|1445295_1445493_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVB60264.1|1445597_1446038_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AVB60265.1|1446286_1446730_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AVB60266.1|1446734_1447799_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AVB60267.1|1447812_1448241_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVB60268.1|1448354_1448801_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AVB60269.1|1448827_1448995_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60270.1|1448994_1451448_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
AVB60271.1|1451447_1451870_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AVB60272.1|1452151_1453681_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AVB60273.1|1453696_1454023_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AVB60274.1|1454022_1454451_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AVB60275.1|1454443_1455496_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AVB60276.1|1455492_1456191_+	hypothetical protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AVB60277.1|1456191_1457178_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AVB60278.1|1457199_1462377_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AVB60279.1|1462393_1462747_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AVB60280.1|1463009_1463270_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVB60281.1|1463494_1463950_-	hypothetical protein	NA	NA	NA	NA	NA
AVB60282.1|1464177_1464597_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AVB60283.1|1464895_1465105_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVB60284.1|1465124_1465346_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60285.1|1465562_1465961_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	1548653	1557198	4119929		Pandoravirus(33.33%)	10	NA	NA
AVB60353.1|1548653_1549238_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AVB60354.1|1549230_1550589_+	aminodeoxychorismate synthase, component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AVB60355.1|1550578_1551322_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVB60356.1|1551355_1552057_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60357.1|1552082_1552655_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AVB60358.1|1552708_1553512_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
AVB62617.1|1553522_1553888_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVB60359.1|1553880_1554387_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVB60360.1|1554367_1555153_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AVB60361.1|1555407_1557198_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	1684613	1739744	4119929	capsid,integrase,tail,portal,holin,head,terminase	Clostridium_phage(78.18%)	67	1678616:1678631	1687836:1687851
1678616:1678631	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB60473.1|1684613_1685744_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AVB60474.1|1685822_1686530_-	DNA-binding protein	NA	NA	NA	NA	NA
AVB60475.1|1686542_1687412_-	protein kinase	NA	NA	NA	NA	NA
AVB60476.1|1688031_1688538_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687836:1687851	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB60477.1|1688613_1689162_-	transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AVB60478.1|1689173_1689515_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AVB60479.1|1689691_1689895_+	transcriptional regulator	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AVB60480.1|1689942_1690752_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AVB60481.1|1690798_1691008_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60482.1|1691017_1691392_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AVB60483.1|1691467_1691665_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AVB60484.1|1691695_1692088_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AVB60485.1|1692288_1692726_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60486.1|1692737_1693904_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AVB60487.1|1693918_1694254_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60488.1|1694306_1694879_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVB60489.1|1694901_1695474_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AVB60490.1|1695473_1697432_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AVB60491.1|1697443_1699861_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AVB60492.1|1700142_1700469_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AVB60493.1|1700417_1701788_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AVB60494.1|1701941_1702421_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AVB60495.1|1703447_1704422_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60496.1|1704658_1704952_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60497.1|1705021_1705714_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AVB62623.1|1705703_1706945_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
AVB60498.1|1706950_1708393_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AVB60499.1|1708382_1709918_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	71.9	2.5e-194
AVB60500.1|1709919_1710168_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60501.1|1710235_1710799_+	scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AVB60502.1|1710810_1711701_+|capsid	capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AVB60503.1|1711719_1711953_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AVB60504.1|1711962_1712364_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AVB60505.1|1712357_1712705_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AVB60506.1|1712704_1712995_+	hypothetical protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AVB60507.1|1713104_1713911_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AVB60508.1|1714259_1714697_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AVB60509.1|1714689_1714866_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
AVB60510.1|1714866_1716177_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AVB60511.1|1716193_1716664_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
AVB60512.1|1716722_1717550_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AVB60513.1|1717621_1718062_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AVB60514.1|1718061_1718256_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60515.1|1718402_1718564_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AVB60516.1|1719900_1720089_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
AVB60517.1|1720207_1721074_+	phage repressor protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AVB60518.1|1721126_1721261_+	hypothetical protein	NA	NA	NA	NA	NA
AVB60519.1|1721938_1722466_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AVB60520.1|1722603_1723371_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AVB60521.1|1723436_1725809_+	hypothetical protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
AVB60522.1|1725825_1726515_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AVB60523.1|1726507_1728400_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AVB60524.1|1728413_1728674_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AVB60525.1|1728678_1729098_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AVB60526.1|1729098_1730148_+|tail	phage tail protein	tail	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AVB60527.1|1730140_1730758_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AVB60528.1|1730769_1731795_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AVB60529.1|1731811_1733338_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AVB60530.1|1733352_1733646_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AVB60531.1|1733645_1733828_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AVB60532.1|1733861_1734428_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AVB60533.1|1734458_1734749_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AVB60534.1|1734752_1735010_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AVB60535.1|1735270_1736134_+	abortive infection bacteriophage resistance protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AVB60536.1|1736212_1737025_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AVB60537.1|1737118_1739518_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AVB60538.1|1739558_1739744_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 7
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	2598314	2625430	4119929	tRNA,coat,protease,transposase	Clostridium_phage(44.44%)	25	NA	NA
AVB61300.1|2598314_2599349_-|protease	protease	protease	NA	NA	NA	NA
AVB61301.1|2599341_2599716_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	50.8	1.4e-29
AVB61302.1|2601465_2602053_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AVB61303.1|2602118_2603153_-|protease	protease	protease	NA	NA	NA	NA
AVB61304.1|2603145_2603520_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	2.8e-30
AVB61305.1|2604161_2604644_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AVB61306.1|2604935_2605640_-	hypothetical protein	NA	NA	NA	NA	NA
AVB61307.1|2605993_2607010_-	transglycosylase	NA	NA	NA	NA	NA
AVB61308.1|2607137_2607644_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
AVB61309.1|2607802_2608471_-	hypothetical protein	NA	NA	NA	NA	NA
AVB61310.1|2608883_2609390_-	flavin reductase	NA	NA	NA	NA	NA
AVB61311.1|2609760_2610789_-	exonuclease	NA	NA	NA	NA	NA
AVB61312.1|2610836_2611697_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.4	2.9e-30
AVB61313.1|2611975_2612185_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB61314.1|2612184_2612451_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB61315.1|2612479_2613052_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB61316.1|2613285_2614476_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
AVB61317.1|2614735_2615167_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
AVB61318.1|2615279_2617508_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
AVB61319.1|2617618_2618104_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB61320.1|2618355_2619579_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVB61321.1|2619582_2622717_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
AVB61322.1|2622738_2624049_+	multidrug transporter	NA	NA	NA	NA	NA
AVB61323.1|2624258_2625086_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
AVB61324.1|2625112_2625430_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	3057204	3066157	4119929		Catovirus(50.0%)	8	NA	NA
AVB61682.1|3057204_3059118_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AVB61683.1|3059201_3060293_-	glycosyltransferase family 4 protein	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
AVB62649.1|3060298_3061594_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
AVB61684.1|3061619_3062372_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AVB61685.1|3062419_3063328_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AVB61686.1|3063349_3064099_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AVB61687.1|3064127_3065318_-	glycerophosphotransferase	NA	NA	NA	NA	NA
AVB61688.1|3065317_3066157_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 9
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	3845403	3859235	4119929	portal,transposase	Clostridioides_phage(69.23%)	18	NA	NA
AVB62310.1|3845403_3846543_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
AVB62311.1|3846875_3847451_+	hypothetical protein	NA	NA	NA	NA	NA
AVB62312.1|3847461_3847650_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AVB62313.1|3847844_3848402_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AVB62314.1|3848701_3849445_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
AVB62315.1|3849898_3850441_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
AVB62316.1|3850535_3851741_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AVB62317.1|3851718_3851886_+	hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AVB62673.1|3851956_3852139_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AVB62318.1|3852269_3852713_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AVB62319.1|3852930_3853374_-	hypothetical protein	NA	NA	NA	NA	NA
AVB62320.1|3853395_3853713_-	hypothetical protein	NA	NA	NA	NA	NA
AVB62674.1|3853902_3854565_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
AVB62321.1|3854596_3855139_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AVB62322.1|3855378_3855561_-	hypothetical protein	NA	NA	NA	NA	NA
AVB62323.1|3855588_3856200_-	hypothetical protein	NA	NA	NA	NA	NA
AVB62324.1|3856676_3857891_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AVB62325.1|3858077_3859235_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 10
CP026599	Clostridioides difficile strain 09-00072 chromosome, complete genome	4119929	4030960	4046383	4119929		Streptococcus_phage(92.31%)	19	NA	NA
AVB62486.1|4030960_4031284_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AVB62487.1|4031298_4031682_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AVB62488.1|4031777_4032191_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB62489.1|4032297_4032756_+	glyoxalase	NA	NA	NA	NA	NA
AVB62490.1|4032780_4033323_+	hypothetical protein	NA	NA	NA	NA	NA
AVB62679.1|4033379_4033886_+	hypothetical protein	NA	NA	NA	NA	NA
AVB62491.1|4033995_4035390_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AVB62680.1|4035669_4036791_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AVB62492.1|4036797_4036932_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AVB62493.1|4036932_4037154_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AVB62494.1|4037473_4038112_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AVB62495.1|4038188_4038377_+	hypothetical protein	NA	NA	NA	NA	NA
AVB62496.1|4038397_4038895_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AVB62497.1|4038910_4039414_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AVB62498.1|4039526_4039916_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AVB62499.1|4039902_4042335_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
AVB62500.1|4042334_4044470_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
AVB62501.1|4044466_4045474_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
AVB62502.1|4045489_4046383_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
