The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	285640	301826	4119749		Synechococcus_phage(23.08%)	14	NA	NA
AVB62904.1|285640_286153_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AVB62905.1|286602_287079_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AVB62906.1|287084_287783_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVB62907.1|287794_289162_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AVB62908.1|289155_290232_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AVB62909.1|290225_290819_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AVB62910.1|290811_292344_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVB62911.1|292354_293605_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVB62912.1|293629_297436_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AVB62913.1|297641_298514_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AVB62914.1|298622_299504_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AVB62915.1|299540_300098_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AVB62916.1|300135_301119_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AVB62917.1|301157_301826_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	466583	473212	4119749	transposase,integrase	Clostridium_phage(33.33%)	7	457921:457936	478993:479008
457921:457936	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
AVB63071.1|466583_467939_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AVB63072.1|468020_468236_-|integrase	integrase	integrase	A0A0A8WIE1	Clostridium_phage	68.1	7.0e-10
AVB63073.1|468461_469496_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AVB63074.1|469582_469786_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AVB63075.1|469956_471117_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AVB63076.1|471647_472547_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AVB63077.1|472540_473212_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
478993:479008	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 3
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	588698	659427	4119749	transposase,tRNA,coat,protease	Streptococcus_phage(33.33%)	55	NA	NA
AVB63169.1|588698_589415_+|protease	protease PrsW	protease	NA	NA	NA	NA
AVB63170.1|589493_590804_+	methylase	NA	NA	NA	NA	NA
AVB63171.1|590903_591440_+	signal peptidase I	NA	NA	NA	NA	NA
AVB63172.1|591605_592142_+	signal peptidase I	NA	NA	NA	NA	NA
AVB63173.1|592151_592907_+	endonuclease	NA	NA	NA	NA	NA
AVB63174.1|592980_594648_+	nucleoside kinase	NA	NA	NA	NA	NA
AVB63175.1|595228_596158_+	glutaminase	NA	NA	NA	NA	NA
AVB63176.1|596255_596819_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVB63177.1|597306_598143_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
AVB63178.1|598394_599390_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVB63179.1|599646_600051_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVB63180.1|600211_600403_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63181.1|601050_601965_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVB63182.1|602070_604308_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
AVB66129.1|604939_605557_+	endonuclease III	NA	NA	NA	NA	NA
AVB63183.1|605750_606221_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVB63184.1|606256_607105_+	DegV family protein	NA	NA	NA	NA	NA
AVB63185.1|607477_608482_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB63186.1|608606_609719_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB63187.1|610140_610902_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63188.1|610904_611723_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63189.1|611902_612505_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVB63190.1|613367_615287_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AVB66130.1|616716_616866_-	hypothetical protein	NA	NA	NA	NA	NA
AVB63191.1|617222_618341_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
AVB63192.1|619338_620376_-	hypothetical protein	NA	NA	NA	NA	NA
AVB63193.1|621065_621386_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB63194.1|621746_623087_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AVB63195.1|623764_624334_-	hydrolase	NA	NA	NA	NA	NA
AVB63196.1|624494_625745_-	MFS transporter	NA	NA	NA	NA	NA
AVB63197.1|626036_626624_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB63198.1|626945_628406_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVB63199.1|628779_629385_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB63200.1|629387_631955_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AVB63201.1|631947_632112_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63202.1|633220_633496_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63203.1|633515_633803_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63204.1|635357_636467_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AVB63205.1|636531_638655_+	ATP-binding protein	NA	NA	NA	NA	NA
AVB63206.1|638669_643880_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63207.1|644104_646204_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AVB63208.1|646246_646642_-	hypothetical protein	NA	NA	NA	NA	NA
AVB63209.1|647702_647891_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63210.1|648075_648516_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB63211.1|648851_650165_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AVB63212.1|650182_650719_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AVB63213.1|651237_651459_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB63214.1|651458_651722_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB63215.1|651783_652356_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB63216.1|653173_653707_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
AVB63217.1|653931_654111_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVB66131.1|654717_654966_-	hypothetical protein	NA	NA	NA	NA	NA
AVB63218.1|655813_656227_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVB63219.1|656301_656811_+	GrpB family protein	NA	NA	NA	NA	NA
AVB63220.1|658317_659427_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 4
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	1393419	1466003	4119749	tRNA,protease,plate,portal,tail	Clostridium_phage(46.15%)	68	NA	NA
AVB63824.1|1393419_1394325_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AVB63825.1|1394455_1395385_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AVB66148.1|1395384_1395483_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63826.1|1395488_1395746_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AVB63827.1|1395985_1396831_+	DegV family protein	NA	NA	NA	NA	NA
AVB63828.1|1396955_1399067_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AVB63829.1|1399332_1400076_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AVB63830.1|1400233_1401481_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	6.6e-52
AVB63831.1|1401515_1401761_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
AVB63832.1|1401770_1402994_+	aspartate kinase	NA	NA	NA	NA	NA
AVB63833.1|1403106_1403841_+|protease	Clp protease	protease	NA	NA	NA	NA
AVB63834.1|1403963_1406375_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVB63835.1|1406377_1407436_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVB63836.1|1407429_1408764_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVB63837.1|1408750_1409293_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVB63838.1|1409580_1410627_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AVB66149.1|1410802_1412344_+	ribonuclease Y	NA	NA	NA	NA	NA
AVB63839.1|1412978_1414760_+	DNA helicase	NA	NA	NA	NA	NA
AVB63840.1|1414841_1415372_-	signal peptidase I	NA	NA	NA	NA	NA
AVB63841.1|1415411_1416236_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AVB63842.1|1416492_1417401_+	recombinase	NA	NA	NA	NA	NA
AVB63843.1|1417544_1418990_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVB63844.1|1419300_1419753_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB63845.1|1420164_1421742_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AVB66150.1|1422790_1424131_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AVB63846.1|1424242_1425439_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVB63847.1|1425823_1426774_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVB63848.1|1426934_1427687_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
AVB63849.1|1427778_1428555_-	exonuclease	NA	NA	NA	NA	NA
AVB63850.1|1428869_1430768_+	glutamine synthetase	NA	NA	NA	NA	NA
AVB63851.1|1432216_1432549_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB63852.1|1432535_1433594_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVB63853.1|1433586_1434657_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63854.1|1434758_1435295_+	lipoprotein	NA	NA	NA	NA	NA
AVB63855.1|1435411_1436119_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
AVB63856.1|1436120_1436837_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVB63857.1|1436838_1437597_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVB63858.1|1437740_1439129_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVB63859.1|1439204_1440026_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVB63860.1|1440276_1441431_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVB63861.1|1441613_1441814_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVB63862.1|1442234_1442663_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVB63863.1|1442805_1443561_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVB63864.1|1443681_1444098_-	hypothetical protein	NA	NA	NA	NA	NA
AVB63865.1|1444261_1444768_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AVB63866.1|1444849_1445170_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AVB63867.1|1445338_1445536_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVB63868.1|1445640_1446081_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AVB63869.1|1446329_1446773_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AVB63870.1|1446777_1447842_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AVB63871.1|1447855_1448284_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVB63872.1|1448397_1448844_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AVB63873.1|1448870_1449038_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63874.1|1451489_1451912_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AVB63875.1|1452193_1453723_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AVB63876.1|1453738_1454065_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AVB63877.1|1454064_1454493_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AVB63878.1|1454485_1455538_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AVB63879.1|1455534_1456233_+	hypothetical protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AVB63880.1|1456233_1457220_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AVB63881.1|1457241_1462419_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AVB63882.1|1462435_1462789_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AVB63883.1|1463051_1463312_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVB63884.1|1463536_1463992_-	hypothetical protein	NA	NA	NA	NA	NA
AVB63885.1|1464219_1464639_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AVB63886.1|1464937_1465147_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVB63887.1|1465166_1465388_+	hypothetical protein	NA	NA	NA	NA	NA
AVB63888.1|1465604_1466003_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	1548696	1557241	4119749		Pandoravirus(33.33%)	9	NA	NA
AVB63952.1|1548696_1549281_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AVB63953.1|1549273_1550632_+	aminodeoxychorismate synthase, component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AVB63954.1|1550621_1551365_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVB63955.1|1552125_1552698_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AVB63956.1|1552751_1553555_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
AVB66153.1|1553565_1553931_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVB63957.1|1553923_1554430_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVB63958.1|1554410_1555196_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AVB63959.1|1555450_1557241_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	1684652	1739782	4119749	holin,head,capsid,integrase,terminase,portal,tail	Clostridium_phage(77.78%)	67	1678655:1678670	1687875:1687890
1678655:1678670	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB64069.1|1684652_1685783_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AVB64070.1|1685861_1686569_-	DNA-binding protein	NA	NA	NA	NA	NA
AVB64071.1|1686581_1687451_-	protein kinase	NA	NA	NA	NA	NA
AVB64072.1|1688070_1688577_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687875:1687890	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB64073.1|1688652_1689201_-	transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AVB64074.1|1689212_1689554_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AVB64075.1|1689730_1689934_+	transcriptional regulator	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AVB64076.1|1689981_1690791_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AVB64077.1|1690837_1691047_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64078.1|1691056_1691431_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AVB64079.1|1691506_1691704_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AVB64080.1|1691734_1692127_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AVB64081.1|1692327_1692765_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64082.1|1692776_1693943_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AVB64083.1|1693957_1694293_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64084.1|1694345_1694918_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVB64085.1|1694940_1695513_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AVB64086.1|1695512_1697471_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AVB64087.1|1697482_1699900_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AVB64088.1|1700181_1700508_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AVB64089.1|1700456_1701827_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AVB64090.1|1701980_1702460_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AVB64091.1|1703486_1704461_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64092.1|1704516_1704717_-	hypothetical protein	NA	NA	NA	NA	NA
AVB64093.1|1704697_1704991_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64094.1|1705060_1705753_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AVB66158.1|1705742_1706984_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
AVB64095.1|1706989_1708432_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AVB64096.1|1708421_1709957_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	71.9	2.5e-194
AVB64097.1|1709958_1710207_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64098.1|1710274_1710838_+	scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AVB64099.1|1710849_1711740_+|capsid	capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AVB64100.1|1711758_1711992_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AVB64101.1|1712001_1712403_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AVB64102.1|1712396_1712744_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AVB64103.1|1712743_1713034_+	hypothetical protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AVB64104.1|1713143_1713950_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AVB64105.1|1714298_1714736_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AVB64106.1|1714728_1714905_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
AVB64107.1|1714905_1716216_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AVB64108.1|1716760_1717588_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AVB64109.1|1717659_1718100_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AVB64110.1|1718099_1718294_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64111.1|1718440_1718602_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AVB64112.1|1719938_1720127_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
AVB64113.1|1720245_1721112_+	phage repressor protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AVB64114.1|1721164_1721299_+	hypothetical protein	NA	NA	NA	NA	NA
AVB64115.1|1721976_1722504_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AVB64116.1|1722641_1723409_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AVB64117.1|1723474_1725847_+	hypothetical protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
AVB64118.1|1725863_1726553_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AVB64119.1|1726545_1728438_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AVB64120.1|1728451_1728712_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AVB64121.1|1728716_1729136_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AVB64122.1|1729136_1730186_+|tail	phage tail protein	tail	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AVB64123.1|1730178_1730796_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AVB64124.1|1730807_1731833_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AVB64125.1|1731849_1733376_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AVB64126.1|1733390_1733684_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AVB64127.1|1733683_1733866_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AVB64128.1|1733899_1734466_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AVB64129.1|1734496_1734787_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AVB64130.1|1734790_1735048_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AVB64131.1|1735308_1736172_+	abortive infection bacteriophage resistance protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AVB64132.1|1736250_1737063_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AVB64133.1|1737156_1739556_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AVB64134.1|1739596_1739782_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 7
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	3845220	3859052	4119749	transposase,portal	Clostridioides_phage(69.23%)	18	NA	NA
AVB65855.1|3845220_3846360_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
AVB65856.1|3846692_3847268_+	hypothetical protein	NA	NA	NA	NA	NA
AVB65857.1|3847278_3847467_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AVB65858.1|3847661_3848219_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AVB65859.1|3848518_3849262_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
AVB65860.1|3849715_3850258_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
AVB65861.1|3850352_3851558_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AVB65862.1|3851535_3851703_+	hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AVB66209.1|3851773_3851956_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AVB65863.1|3852086_3852530_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AVB65864.1|3852747_3853191_-	hypothetical protein	NA	NA	NA	NA	NA
AVB65865.1|3853212_3853530_-	hypothetical protein	NA	NA	NA	NA	NA
AVB66210.1|3853719_3854382_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
AVB65866.1|3854413_3854956_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AVB65867.1|3855195_3855378_-	hypothetical protein	NA	NA	NA	NA	NA
AVB65868.1|3855405_3856017_-	hypothetical protein	NA	NA	NA	NA	NA
AVB65869.1|3856493_3857708_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AVB65870.1|3857894_3859052_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 8
CP026597	Clostridioides difficile strain 10-00078 chromosome, complete genome	4119749	4030779	4044290	4119749		Streptococcus_phage(90.0%)	16	NA	NA
AVB66027.1|4030779_4031103_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AVB66028.1|4031117_4031501_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AVB66029.1|4031596_4032010_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB66030.1|4032116_4032575_+	glyoxalase	NA	NA	NA	NA	NA
AVB66031.1|4032599_4033142_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66214.1|4033198_4033705_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66032.1|4033814_4035209_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AVB66215.1|4035488_4036610_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AVB66033.1|4036616_4036751_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AVB66034.1|4036751_4036973_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AVB66035.1|4037292_4037931_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AVB66036.1|4038007_4038196_+	hypothetical protein	NA	NA	NA	NA	NA
AVB66037.1|4038216_4038714_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AVB66038.1|4038729_4039233_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AVB66039.1|4039345_4039735_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AVB66040.1|4042154_4044290_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
