assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	1	150328-150406	1	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|40aa|down_2|CP026596.1_164942_165062_+,NA|226aa|down_5|CP026596.1_167242_167920_+	NA|278aa|up_9|CP026596.1_127578_128412_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP026596.1_128399_129266_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP026596.1_129259_130063_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP026596.1_130094_130826_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP026596.1_130945_131377_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP026596.1_131405_131798_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|CP026596.1_132304_133009_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP026596.1_145377_146562_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP026596.1_146934_149286_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP026596.1_149307_149847_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP026596.1_162928_163768_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP026596.1_163764_164946_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|40aa|down_2|CP026596.1_164942_165062_+	NA	NA|301aa|down_3|CP026596.1_165249_166152_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_4|CP026596.1_166173_167253_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_5|CP026596.1_167242_167920_+	NA	NA|72aa|down_6|CP026596.1_167962_168178_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_7|CP026596.1_168206_169286_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_8|CP026596.1_169285_170038_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_9|CP026596.1_170038_170596_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	3	1010711-1010788	3	CRISPRCasFinder	no	cas14j	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AAAAAATAAGAAAGTTTATAAATA	24	0	0	NA	NA	NA	1	1	TypeV	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|50aa|down_8|CP026596.1_1019485_1019635_-	NA|527aa|up_9|CP026596.1_995350_996931_+	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]	cas14j|373aa|up_8|CP026596.1_997676_998795_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|up_7|CP026596.1_999078_999525_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|348aa|up_6|CP026596.1_999545_1000589_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|387aa|up_5|CP026596.1_1001359_1002520_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|377aa|up_4|CP026596.1_1002521_1003652_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|481aa|up_3|CP026596.1_1003680_1005123_+	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|814aa|up_2|CP026596.1_1005115_1007557_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|622aa|up_1|CP026596.1_1007561_1009427_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|218aa|up_0|CP026596.1_1009671_1010325_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|492aa|down_0|CP026596.1_1010962_1012438_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|138aa|down_1|CP026596.1_1012524_1012938_+	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|284aa|down_2|CP026596.1_1012967_1013819_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|293aa|down_3|CP026596.1_1013808_1014687_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|67aa|down_4|CP026596.1_1014866_1015067_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|497aa|down_5|CP026596.1_1015533_1017024_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|499aa|down_6|CP026596.1_1017281_1018778_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|117aa|down_7|CP026596.1_1018911_1019262_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|50aa|down_8|CP026596.1_1019485_1019635_-	NA	cas14j|373aa|down_9|CP026596.1_1019900_1021019_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	4	1305902-1306859	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,14	14	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|75aa|up_2|CP026596.1_1303262_1303487_+,NA|52aa|down_0|CP026596.1_1308075_1308231_+,NA|34aa|down_1|CP026596.1_1308255_1308357_+,NA|84aa|down_2|CP026596.1_1308476_1308728_+,NA|38aa|down_3|CP026596.1_1309037_1309151_+,NA|70aa|down_4|CP026596.1_1309358_1309568_+,NA|128aa|down_5|CP026596.1_1309936_1310320_-,NA|115aa|down_6|CP026596.1_1310446_1310791_+,NA|72aa|down_7|CP026596.1_1310973_1311189_+,NA|40aa|down_8|CP026596.1_1311994_1312114_-,NA|106aa|down_9|CP026596.1_1312174_1312492_-	NA|360aa|up_9|CP026596.1_1293739_1294819_+	pfam02618, YceG, YceG-like family	NA|225aa|up_8|CP026596.1_1294990_1295665_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_7|CP026596.1_1295651_1296899_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_6|CP026596.1_1296970_1298635_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|506aa|up_5|CP026596.1_1299038_1300556_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_4|CP026596.1_1300680_1301502_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_3|CP026596.1_1301692_1303120_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|75aa|up_2|CP026596.1_1303262_1303487_+	NA	NA|224aa|up_1|CP026596.1_1303429_1304101_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|300aa|up_0|CP026596.1_1304094_1304994_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|52aa|down_0|CP026596.1_1308075_1308231_+	NA	NA|34aa|down_1|CP026596.1_1308255_1308357_+	NA	NA|84aa|down_2|CP026596.1_1308476_1308728_+	NA	NA|38aa|down_3|CP026596.1_1309037_1309151_+	NA	NA|70aa|down_4|CP026596.1_1309358_1309568_+	NA	NA|128aa|down_5|CP026596.1_1309936_1310320_-	NA	NA|115aa|down_6|CP026596.1_1310446_1310791_+	NA	NA|72aa|down_7|CP026596.1_1310973_1311189_+	NA	NA|40aa|down_8|CP026596.1_1311994_1312114_-	NA	NA|106aa|down_9|CP026596.1_1312174_1312492_-	NA
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	5	1515248-1515934	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	9,10,9	10	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_4|CP026596.1_1509893_1510442_-,NA|80aa|down_4|CP026596.1_1523066_1523306_+,NA|59aa|down_5|CP026596.1_1523493_1523670_-,NA|45aa|down_9|CP026596.1_1526296_1526431_+	NA|260aa|up_9|CP026596.1_1504210_1504990_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|CP026596.1_1505093_1505678_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|CP026596.1_1505877_1507308_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|CP026596.1_1507623_1508568_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_5|CP026596.1_1508838_1509774_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_4|CP026596.1_1509893_1510442_-	NA	NA|143aa|up_3|CP026596.1_1510593_1511022_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_2|CP026596.1_1511088_1511757_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|CP026596.1_1511874_1513230_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|131aa|up_0|CP026596.1_1514324_1514717_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|CP026596.1_1516259_1517993_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP026596.1_1518232_1519078_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|CP026596.1_1519108_1521343_-	cd01948, EAL, EAL domain	NA|270aa|down_3|CP026596.1_1522112_1522922_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|CP026596.1_1523066_1523306_+	NA	NA|59aa|down_5|CP026596.1_1523493_1523670_-	NA	NA|225aa|down_6|CP026596.1_1524174_1524849_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|CP026596.1_1525068_1525623_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|CP026596.1_1525700_1526066_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|CP026596.1_1526296_1526431_+	NA
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	6	1626553-1626846	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|CP026596.1_1615377_1615527_+,NA|190aa|up_7|CP026596.1_1616441_1617011_+,NA|61aa|up_4|CP026596.1_1619960_1620143_-,NA|91aa|down_0|CP026596.1_1627013_1627286_-,NA|323aa|down_5|CP026596.1_1631768_1632737_+	NA|50aa|up_9|CP026596.1_1615377_1615527_+	NA	NA|300aa|up_8|CP026596.1_1615537_1616437_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|CP026596.1_1616441_1617011_+	NA	NA|216aa|up_6|CP026596.1_1617177_1617825_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP026596.1_1618214_1619129_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP026596.1_1619960_1620143_-	NA	NA|283aa|up_3|CP026596.1_1620553_1621402_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP026596.1_1621420_1622248_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|CP026596.1_1622222_1623146_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP026596.1_1623798_1625892_+	cd01948, EAL, EAL domain	NA|91aa|down_0|CP026596.1_1627013_1627286_-	NA	NA|273aa|down_1|CP026596.1_1627504_1628323_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|CP026596.1_1628455_1630576_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|CP026596.1_1630601_1630829_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|CP026596.1_1631155_1631596_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|CP026596.1_1631768_1632737_+	NA	NA|403aa|down_6|CP026596.1_1633212_1634421_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|CP026596.1_1634481_1635363_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|CP026596.1_1635778_1636693_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|CP026596.1_1636915_1637461_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	7	1719230-1719586	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,5,5	5	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|269aa|up_8|CP026596.1_1713028_1713835_+,NA|146aa|up_7|CP026596.1_1714183_1714621_+,NA|59aa|up_6|CP026596.1_1714613_1714790_+,NA|276aa|up_3|CP026596.1_1716646_1717474_+,NA|54aa|up_0|CP026596.1_1718326_1718488_+,NA|63aa|down_0|CP026596.1_1719824_1720013_+,NA|45aa|down_2|CP026596.1_1721050_1721185_+	NA|97aa|up_9|CP026596.1_1712628_1712919_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|269aa|up_8|CP026596.1_1713028_1713835_+	NA	NA|146aa|up_7|CP026596.1_1714183_1714621_+	NA	NA|59aa|up_6|CP026596.1_1714613_1714790_+	NA	NA|437aa|up_5|CP026596.1_1714790_1716101_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_4|CP026596.1_1716117_1716588_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_3|CP026596.1_1716646_1717474_+	NA	NA|147aa|up_2|CP026596.1_1717545_1717986_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|65aa|up_1|CP026596.1_1717985_1718180_+	TIGR02247, Hypothetical_protein_K09H11	NA|54aa|up_0|CP026596.1_1718326_1718488_+	NA	NA|63aa|down_0|CP026596.1_1719824_1720013_+	NA	NA|289aa|down_1|CP026596.1_1720131_1720998_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|45aa|down_2|CP026596.1_1721050_1721185_+	NA	NA|176aa|down_3|CP026596.1_1721862_1722390_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_4|CP026596.1_1722527_1723295_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_5|CP026596.1_1723360_1725733_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_6|CP026596.1_1725749_1726439_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_7|CP026596.1_1726431_1728324_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_8|CP026596.1_1728337_1728598_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_9|CP026596.1_1728602_1729022_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	8	1721451-1721741	8	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAATC	30	0	0	NA	NA	I-A	4	4	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|59aa|up_9|CP026596.1_1714613_1714790_+,NA|276aa|up_6|CP026596.1_1716646_1717474_+,NA|54aa|up_3|CP026596.1_1718326_1718488_+,NA|63aa|up_2|CP026596.1_1719824_1720013_+,NA|45aa|up_0|CP026596.1_1721050_1721185_+,NA	NA|59aa|up_9|CP026596.1_1714613_1714790_+	NA	NA|437aa|up_8|CP026596.1_1714790_1716101_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_7|CP026596.1_1716117_1716588_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_6|CP026596.1_1716646_1717474_+	NA	NA|147aa|up_5|CP026596.1_1717545_1717986_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|65aa|up_4|CP026596.1_1717985_1718180_+	TIGR02247, Hypothetical_protein_K09H11	NA|54aa|up_3|CP026596.1_1718326_1718488_+	NA	NA|63aa|up_2|CP026596.1_1719824_1720013_+	NA	NA|289aa|up_1|CP026596.1_1720131_1720998_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|45aa|up_0|CP026596.1_1721050_1721185_+	NA	NA|176aa|down_0|CP026596.1_1721862_1722390_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_1|CP026596.1_1722527_1723295_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_2|CP026596.1_1723360_1725733_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|CP026596.1_1725749_1726439_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_4|CP026596.1_1726431_1728324_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|CP026596.1_1728337_1728598_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|CP026596.1_1728602_1729022_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|CP026596.1_1729022_1730072_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|CP026596.1_1730064_1730682_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_9|CP026596.1_1730693_1731719_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	9	1859014-1859968	5,9,5	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	12,14,14	14	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|CP026596.1_1860376_1860664_+,NA|59aa|down_5|CP026596.1_1867051_1867228_-,NA|341aa|down_6|CP026596.1_1867802_1868825_+,NA|258aa|down_8|CP026596.1_1869731_1870505_+	NA|266aa|up_9|CP026596.1_1842540_1843338_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_8|CP026596.1_1843647_1844634_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_7|CP026596.1_1845117_1846848_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|825aa|up_6|CP026596.1_1848248_1850723_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|CP026596.1_1850722_1852180_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|CP026596.1_1852602_1854960_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|CP026596.1_1855045_1855363_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|252aa|up_2|CP026596.1_1855701_1856457_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_1|CP026596.1_1857095_1858367_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|59aa|up_0|CP026596.1_1858586_1858763_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|96aa|down_0|CP026596.1_1860376_1860664_+	NA	NA|184aa|down_1|CP026596.1_1861201_1861753_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|CP026596.1_1861943_1862906_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|CP026596.1_1863200_1865045_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_4|CP026596.1_1865366_1865951_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|CP026596.1_1867051_1867228_-	NA	NA|341aa|down_6|CP026596.1_1867802_1868825_+	NA	NA|296aa|down_7|CP026596.1_1868838_1869726_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|CP026596.1_1869731_1870505_+	NA	NA|242aa|down_9|CP026596.1_1870616_1871342_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	10	2209271-2209954	6,10,6	CRT,CRISPRCasFinder,PILER-CR	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTACATTCCATATAGTTAATATAAAAC,CTTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAG	28,29,29	0	0	NA	NA	I-A:I-A:I-A	10,9,8	10	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|43aa|up_4|CP026596.1_2207146_2207275_+,NA|58aa|up_1|CP026596.1_2208545_2208719_+,NA|98aa|up_0|CP026596.1_2208875_2209169_-,NA|80aa|down_7|CP026596.1_2218163_2218403_-,NA|216aa|down_8|CP026596.1_2218573_2219221_-,NA|567aa|down_9|CP026596.1_2219360_2221061_-	NA|345aa|up_9|CP026596.1_2201244_2202279_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|255aa|up_8|CP026596.1_2202968_2203733_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_7|CP026596.1_2204035_2204509_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_6|CP026596.1_2204877_2205435_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_5|CP026596.1_2205692_2206391_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|43aa|up_4|CP026596.1_2207146_2207275_+	NA	NA|156aa|up_3|CP026596.1_2207412_2207880_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_2|CP026596.1_2207890_2208106_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|58aa|up_1|CP026596.1_2208545_2208719_+	NA	NA|98aa|up_0|CP026596.1_2208875_2209169_-	NA	NA|291aa|down_0|CP026596.1_2210784_2211657_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|CP026596.1_2212050_2212629_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|CP026596.1_2212686_2213403_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|CP026596.1_2213593_2214679_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|220aa|down_4|CP026596.1_2214833_2215493_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|CP026596.1_2215709_2217002_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|CP026596.1_2217019_2218213_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|80aa|down_7|CP026596.1_2218163_2218403_-	NA	NA|216aa|down_8|CP026596.1_2218573_2219221_-	NA	NA|567aa|down_9|CP026596.1_2219360_2221061_-	NA
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	13	3253490-3255236	13,7,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	26,26,23	26	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|CP026596.1_3246381_3246582_+,NA|260aa|up_1|CP026596.1_3251765_3252545_+,NA	NA|740aa|up_9|CP026596.1_3240728_3242948_-	cd01948, EAL, EAL domain	NA|885aa|up_8|CP026596.1_3243223_3245878_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP026596.1_3246381_3246582_+	NA	NA|197aa|up_6|CP026596.1_3246789_3247380_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|CP026596.1_3247382_3248258_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP026596.1_3248333_3249725_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP026596.1_3249728_3250865_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP026596.1_3250896_3251442_-	pfam02632, BioY, BioY family	NA|260aa|up_1|CP026596.1_3251765_3252545_+	NA	NA|143aa|up_0|CP026596.1_3253000_3253429_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP026596.1_3255419_3255686_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP026596.1_3255688_3256669_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|CP026596.1_3256671_3257190_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP026596.1_3257237_3259559_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP026596.1_3259569_3260271_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP026596.1_3260272_3261187_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|CP026596.1_3261188_3263066_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|CP026596.1_3263071_3263809_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|CP026596.1_3263886_3264804_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP026596.1_3265082_3266999_-	pfam02687, FtsX, FtsX-like permease family
GCA_002945945.1_ASM294594v1	CP026596	Clostridioides difficile strain 10-00071 chromosome, complete genome	14	3500623-3501245	14,8,8	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas7,cas6,cas5	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	9,9,8	9	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|70aa|up_9|CP026596.1_3485177_3485387_-,NA|243aa|up_7|CP026596.1_3489830_3490559_-,NA|540aa|up_6|CP026596.1_3490576_3492196_-,NA|76aa|up_4|CP026596.1_3493777_3494005_+,NA|389aa|down_2|CP026596.1_3504584_3505751_-,NA|91aa|down_6|CP026596.1_3509034_3509307_-,NA|250aa|down_8|CP026596.1_3510903_3511653_-,NA|105aa|down_9|CP026596.1_3511668_3511983_-	NA|70aa|up_9|CP026596.1_3485177_3485387_-	NA	NA|1452aa|up_8|CP026596.1_3485488_3489844_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|243aa|up_7|CP026596.1_3489830_3490559_-	NA	NA|540aa|up_6|CP026596.1_3490576_3492196_-	NA	NA|337aa|up_5|CP026596.1_3492195_3493206_-	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220)	NA|76aa|up_4|CP026596.1_3493777_3494005_+	NA	NA|130aa|up_3|CP026596.1_3494106_3494496_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|62aa|up_2|CP026596.1_3494525_3494711_+	pfam13333, rve_2, Integrase core domain	NA|431aa|up_1|CP026596.1_3494937_3496230_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|405aa|up_0|CP026596.1_3496229_3497444_-	pfam08867, FRG, FRG domain	cas3|662aa|down_0|CP026596.1_3501497_3503483_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas7|357aa|down_1|CP026596.1_3503493_3504564_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	NA|389aa|down_2|CP026596.1_3504584_3505751_-	NA	cas6|255aa|down_3|CP026596.1_3505752_3506517_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas5|216aa|down_4|CP026596.1_3506507_3507155_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	NA|376aa|down_5|CP026596.1_3507634_3508762_-	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|91aa|down_6|CP026596.1_3509034_3509307_-	NA	NA|445aa|down_7|CP026596.1_3509556_3510891_-	TIGR00665, DnaB, replicative DNA helicase	NA|250aa|down_8|CP026596.1_3510903_3511653_-	NA	NA|105aa|down_9|CP026596.1_3511668_3511983_-	NA
