The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	285644	301830	4177956		Synechococcus_phage(23.08%)	14	NA	NA
AVB48343.1|285644_286157_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AVB48344.1|286606_287083_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AVB48345.1|287088_287787_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVB48346.1|287798_289166_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AVB48347.1|289159_290236_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AVB48348.1|290229_290823_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AVB48349.1|290815_292348_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVB48350.1|292358_293609_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVB48351.1|293633_297440_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AVB48352.1|297645_298518_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AVB48353.1|298626_299508_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AVB48354.1|299544_300102_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AVB48355.1|300139_301123_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AVB48356.1|301161_301830_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	466588	473217	4177956	transposase,integrase	Clostridium_phage(33.33%)	7	457926:457941	478998:479013
457926:457941	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
AVB48511.1|466588_467944_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AVB48512.1|468025_468241_-|integrase	integrase	integrase	A0A0A8WIE1	Clostridium_phage	68.1	7.0e-10
AVB48513.1|468466_469501_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AVB48514.1|469587_469791_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AVB48515.1|469961_471122_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AVB48516.1|471652_472552_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AVB48517.1|472545_473217_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
478998:479013	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 3
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	588703	659451	4177956	transposase,protease,tRNA,coat	Streptococcus_phage(33.33%)	56	NA	NA
AVB48608.1|588703_589420_+|protease	protease PrsW	protease	NA	NA	NA	NA
AVB48609.1|589498_590809_+	methylase	NA	NA	NA	NA	NA
AVB48610.1|590908_591445_+	signal peptidase I	NA	NA	NA	NA	NA
AVB48611.1|591610_592147_+	signal peptidase I	NA	NA	NA	NA	NA
AVB48612.1|592156_592912_+	endonuclease	NA	NA	NA	NA	NA
AVB48613.1|592985_594653_+	nucleoside kinase	NA	NA	NA	NA	NA
AVB48614.1|595233_596163_+	glutaminase	NA	NA	NA	NA	NA
AVB48615.1|596260_596824_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVB48616.1|597311_598148_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
AVB48617.1|598399_599395_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVB48618.1|599651_600056_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVB48619.1|600216_600408_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48620.1|601055_601970_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVB48621.1|602075_604313_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
AVB51709.1|604944_605562_+	endonuclease III	NA	NA	NA	NA	NA
AVB48622.1|605755_606226_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVB48623.1|606261_607110_+	DegV family protein	NA	NA	NA	NA	NA
AVB48624.1|607499_608504_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB48625.1|608628_609741_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB48626.1|610163_610925_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48627.1|610927_611746_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48628.1|611925_612528_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVB48629.1|613390_615310_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AVB51710.1|616739_616889_-	hypothetical protein	NA	NA	NA	NA	NA
AVB48630.1|617245_618364_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
AVB48631.1|619361_620399_-	hypothetical protein	NA	NA	NA	NA	NA
AVB48632.1|620391_621078_-	hypothetical protein	NA	NA	NA	NA	NA
AVB48633.1|621089_621410_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB48634.1|621770_623111_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AVB48635.1|623788_624358_-	hydrolase	NA	NA	NA	NA	NA
AVB48636.1|624518_625769_-	MFS transporter	NA	NA	NA	NA	NA
AVB48637.1|626060_626648_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB48638.1|626969_628430_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVB48639.1|628803_629409_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB48640.1|629411_631979_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AVB48641.1|631971_632136_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48642.1|633244_633520_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48643.1|633539_633827_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48644.1|635381_636491_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AVB48645.1|636555_638679_+	ATP-binding protein	NA	NA	NA	NA	NA
AVB48646.1|638693_643904_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48647.1|644128_646228_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AVB48648.1|646270_646666_-	hypothetical protein	NA	NA	NA	NA	NA
AVB48649.1|647726_647915_+	hypothetical protein	NA	NA	NA	NA	NA
AVB48650.1|648099_648540_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB48651.1|648875_650189_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AVB48652.1|650206_650743_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AVB48653.1|651261_651483_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB48654.1|651482_651746_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB48655.1|651807_652380_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB48656.1|653197_653731_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
AVB48657.1|653955_654135_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVB51711.1|654741_654990_-	hypothetical protein	NA	NA	NA	NA	NA
AVB48658.1|655837_656251_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVB48659.1|656325_656835_+	GrpB family protein	NA	NA	NA	NA	NA
AVB48660.1|658341_659451_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 4
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	1403125	1466024	4177956	protease,plate,tRNA,portal,tail	Clostridium_phage(46.15%)	61	NA	NA
AVB49295.1|1403125_1403860_+|protease	Clp protease	protease	NA	NA	NA	NA
AVB49296.1|1403982_1406394_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVB49297.1|1406396_1407455_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVB49298.1|1407448_1408783_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVB49299.1|1408769_1409312_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVB49300.1|1409599_1410646_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AVB51729.1|1410821_1412363_+	ribonuclease Y	NA	NA	NA	NA	NA
AVB49301.1|1412997_1414779_+	DNA helicase	NA	NA	NA	NA	NA
AVB49302.1|1414860_1415391_-	signal peptidase I	NA	NA	NA	NA	NA
AVB49303.1|1415430_1416255_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AVB49304.1|1416511_1417420_+	recombinase	NA	NA	NA	NA	NA
AVB49305.1|1417563_1419009_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVB49306.1|1419319_1419772_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB49307.1|1420184_1421762_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AVB49308.1|1421920_1422673_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVB51730.1|1422811_1424152_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AVB49309.1|1424263_1425460_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVB49310.1|1425844_1426795_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVB49311.1|1426955_1427708_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
AVB49312.1|1427799_1428576_-	exonuclease	NA	NA	NA	NA	NA
AVB49313.1|1428890_1430789_+	glutamine synthetase	NA	NA	NA	NA	NA
AVB51731.1|1430916_1432038_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AVB49314.1|1432236_1432569_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB49315.1|1432555_1433614_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVB49316.1|1433606_1434677_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49317.1|1434778_1435315_+	lipoprotein	NA	NA	NA	NA	NA
AVB49318.1|1435431_1436139_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
AVB49319.1|1436140_1436857_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVB49320.1|1436858_1437617_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVB49321.1|1437760_1439149_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVB49322.1|1439224_1440046_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVB49323.1|1440296_1441451_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVB49324.1|1441633_1441834_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVB49325.1|1442254_1442683_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVB49326.1|1442825_1443581_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVB49327.1|1443701_1444118_-	hypothetical protein	NA	NA	NA	NA	NA
AVB49328.1|1444281_1444788_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AVB49329.1|1444869_1445190_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AVB49330.1|1445358_1445556_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVB49331.1|1445660_1446101_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AVB49332.1|1446349_1446793_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AVB49333.1|1446797_1447862_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AVB49334.1|1447875_1448304_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVB49335.1|1448417_1448864_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AVB49336.1|1448890_1449058_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49337.1|1449057_1451511_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
AVB49338.1|1451510_1451933_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AVB49339.1|1452214_1453744_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AVB49340.1|1453759_1454086_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AVB49341.1|1454085_1454514_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AVB49342.1|1454506_1455559_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AVB49343.1|1455555_1456254_+	hypothetical protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AVB49344.1|1456254_1457241_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AVB49345.1|1457262_1462440_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AVB49346.1|1462456_1462810_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AVB49347.1|1463072_1463333_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVB49348.1|1463557_1464013_-	hypothetical protein	NA	NA	NA	NA	NA
AVB49349.1|1464240_1464660_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AVB49350.1|1464958_1465168_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVB49351.1|1465187_1465409_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49352.1|1465625_1466024_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	1548716	1557261	4177956		Pandoravirus(33.33%)	10	NA	NA
AVB49420.1|1548716_1549301_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AVB49421.1|1549293_1550652_+	aminodeoxychorismate synthase, component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AVB49422.1|1550641_1551385_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVB49423.1|1551418_1552120_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49424.1|1552145_1552718_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AVB49425.1|1552771_1553575_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
AVB51734.1|1553585_1553951_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVB49426.1|1553943_1554450_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVB49427.1|1554430_1555216_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AVB49428.1|1555470_1557261_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	1684675	1739806	4177956	terminase,capsid,holin,portal,head,integrase,tail	Clostridium_phage(78.18%)	68	1678678:1678693	1687898:1687913
1678678:1678693	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB49540.1|1684675_1685806_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AVB49541.1|1685884_1686592_-	DNA-binding protein	NA	NA	NA	NA	NA
AVB49542.1|1686604_1687474_-	protein kinase	NA	NA	NA	NA	NA
AVB49543.1|1688093_1688600_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687898:1687913	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB49544.1|1688675_1689224_-	transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AVB49545.1|1689235_1689577_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AVB49546.1|1689753_1689957_+	transcriptional regulator	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AVB49547.1|1690004_1690814_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AVB49548.1|1690860_1691070_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49549.1|1691079_1691454_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AVB49550.1|1691529_1691727_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AVB49551.1|1691757_1692150_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AVB49552.1|1692350_1692788_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49553.1|1692799_1693966_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AVB49554.1|1693980_1694316_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49555.1|1694368_1694941_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVB49556.1|1694963_1695536_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AVB49557.1|1695535_1697494_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AVB49558.1|1697505_1699923_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AVB49559.1|1700204_1700531_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AVB49560.1|1700479_1701850_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AVB49561.1|1702003_1702483_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AVB49562.1|1703509_1704484_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49563.1|1704539_1704740_-	hypothetical protein	NA	NA	NA	NA	NA
AVB49564.1|1704720_1705014_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49565.1|1705083_1705776_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AVB51740.1|1705765_1707007_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
AVB49566.1|1707012_1708455_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AVB49567.1|1708444_1709980_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	71.9	2.5e-194
AVB49568.1|1709981_1710230_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49569.1|1710297_1710861_+	scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AVB49570.1|1710872_1711763_+|capsid	capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AVB49571.1|1711781_1712015_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AVB49572.1|1712024_1712426_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AVB49573.1|1712419_1712767_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AVB49574.1|1712766_1713057_+	hypothetical protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AVB49575.1|1713166_1713973_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AVB49576.1|1714321_1714759_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AVB49577.1|1714751_1714928_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
AVB49578.1|1714928_1716239_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AVB49579.1|1716255_1716726_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
AVB49580.1|1716784_1717612_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AVB49581.1|1717683_1718124_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AVB49582.1|1718123_1718318_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49583.1|1718464_1718626_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AVB49584.1|1719962_1720151_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
AVB49585.1|1720269_1721136_+	phage repressor protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AVB49586.1|1721188_1721323_+	hypothetical protein	NA	NA	NA	NA	NA
AVB49587.1|1722000_1722528_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AVB49588.1|1722665_1723433_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AVB49589.1|1723498_1725871_+	hypothetical protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
AVB49590.1|1725887_1726577_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AVB49591.1|1726569_1728462_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AVB49592.1|1728475_1728736_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AVB49593.1|1728740_1729160_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AVB49594.1|1729160_1730210_+|tail	phage tail protein	tail	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AVB49595.1|1730202_1730820_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AVB49596.1|1730831_1731857_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AVB49597.1|1731873_1733400_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AVB49598.1|1733414_1733708_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AVB49599.1|1733707_1733890_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AVB49600.1|1733923_1734490_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AVB49601.1|1734520_1734811_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AVB49602.1|1734814_1735072_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AVB49603.1|1735332_1736196_+	abortive infection bacteriophage resistance protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AVB49604.1|1736274_1737087_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AVB49605.1|1737180_1739580_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AVB49606.1|1739620_1739806_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 7
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	2598147	2625263	4177956	transposase,protease,tRNA,coat	Clostridium_phage(44.44%)	25	NA	NA
AVB50367.1|2598147_2599182_-|protease	protease	protease	NA	NA	NA	NA
AVB50368.1|2599174_2599549_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	50.8	1.4e-29
AVB50369.1|2601298_2601886_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AVB50370.1|2601951_2602986_-|protease	protease	protease	NA	NA	NA	NA
AVB50371.1|2602978_2603353_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	2.8e-30
AVB50372.1|2603994_2604477_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AVB50373.1|2604768_2605473_-	hypothetical protein	NA	NA	NA	NA	NA
AVB50374.1|2605826_2606843_-	transglycosylase	NA	NA	NA	NA	NA
AVB50375.1|2606970_2607477_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
AVB50376.1|2607635_2608304_-	hypothetical protein	NA	NA	NA	NA	NA
AVB50377.1|2608716_2609223_-	flavin reductase	NA	NA	NA	NA	NA
AVB50378.1|2609593_2610622_-	exonuclease	NA	NA	NA	NA	NA
AVB50379.1|2610669_2611530_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.4	2.9e-30
AVB50380.1|2611808_2612018_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB50381.1|2612017_2612284_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB50382.1|2612312_2612885_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB50383.1|2613118_2614309_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
AVB50384.1|2614568_2615000_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
AVB50385.1|2615112_2617341_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
AVB50386.1|2617451_2617937_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB50387.1|2618188_2619412_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVB50388.1|2619415_2622550_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
AVB50389.1|2622571_2623882_+	multidrug transporter	NA	NA	NA	NA	NA
AVB50390.1|2624091_2624919_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
AVB50391.1|2624945_2625263_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	3057037	3065990	4177956		Catovirus(50.0%)	8	NA	NA
AVB50749.1|3057037_3058951_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AVB50750.1|3059034_3060126_-	glycosyltransferase family 4 protein	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
AVB51767.1|3060131_3061427_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
AVB50751.1|3061452_3062205_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AVB50752.1|3062252_3063161_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AVB50753.1|3063182_3063932_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AVB50754.1|3063960_3065151_-	glycerophosphotransferase	NA	NA	NA	NA	NA
AVB50755.1|3065150_3065990_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 9
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	3903430	3917262	4177956	transposase,portal	Clostridioides_phage(69.23%)	18	NA	NA
AVB51428.1|3903430_3904570_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
AVB51429.1|3904902_3905478_+	hypothetical protein	NA	NA	NA	NA	NA
AVB51430.1|3905488_3905677_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AVB51431.1|3905871_3906429_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AVB51432.1|3906728_3907472_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
AVB51433.1|3907925_3908468_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
AVB51434.1|3908562_3909768_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AVB51435.1|3909745_3909913_+	hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AVB51793.1|3909983_3910166_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AVB51436.1|3910296_3910740_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AVB51437.1|3910957_3911401_-	hypothetical protein	NA	NA	NA	NA	NA
AVB51438.1|3911422_3911740_-	hypothetical protein	NA	NA	NA	NA	NA
AVB51794.1|3911929_3912592_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
AVB51439.1|3912623_3913166_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AVB51440.1|3913405_3913588_-	hypothetical protein	NA	NA	NA	NA	NA
AVB51441.1|3913615_3914227_-	hypothetical protein	NA	NA	NA	NA	NA
AVB51442.1|3914703_3915918_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AVB51443.1|3916104_3917262_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 10
CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	4088987	4104410	4177956		Streptococcus_phage(92.31%)	19	NA	NA
AVB51604.1|4088987_4089311_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AVB51605.1|4089325_4089709_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AVB51606.1|4089804_4090218_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB51607.1|4090324_4090783_+	glyoxalase	NA	NA	NA	NA	NA
AVB51608.1|4090807_4091350_+	hypothetical protein	NA	NA	NA	NA	NA
AVB51799.1|4091406_4091913_+	hypothetical protein	NA	NA	NA	NA	NA
AVB51609.1|4092022_4093417_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AVB51800.1|4093696_4094818_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AVB51610.1|4094824_4094959_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AVB51611.1|4094959_4095181_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AVB51612.1|4095500_4096139_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AVB51613.1|4096215_4096404_+	hypothetical protein	NA	NA	NA	NA	NA
AVB51614.1|4096424_4096922_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AVB51615.1|4096937_4097441_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AVB51616.1|4097553_4097943_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AVB51617.1|4097929_4100362_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
AVB51618.1|4100361_4102497_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
AVB51619.1|4102493_4103501_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
AVB51620.1|4103516_4104410_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
