The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	285646	301832	4119604		Synechococcus_phage(23.08%)	14	NA	NA
AVB32400.1|285646_286159_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AVB32401.1|286608_287085_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AVB32402.1|287090_287789_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AVB32403.1|287800_289168_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AVB32404.1|289161_290238_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AVB32405.1|290231_290825_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AVB32406.1|290817_292350_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AVB32407.1|292360_293611_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AVB32408.1|293635_297442_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AVB32409.1|297647_298520_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AVB32410.1|298628_299510_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AVB32411.1|299546_300104_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AVB32412.1|300141_301125_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AVB32413.1|301163_301832_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	466590	473219	4119604	transposase,integrase	Clostridium_phage(33.33%)	7	457928:457943	479000:479015
457928:457943	attL	TAGCTAAATTCCAAAA	NA	NA	NA	NA
AVB32568.1|466590_467946_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AVB32569.1|468027_468243_-|integrase	integrase	integrase	A0A0A8WIE1	Clostridium_phage	68.1	7.0e-10
AVB32570.1|468468_469503_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AVB32571.1|469589_469793_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AVB32572.1|469963_471124_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AVB32573.1|471654_472554_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AVB32574.1|472547_473219_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
479000:479015	attR	TTTTGGAATTTAGCTA	NA	NA	NA	NA
>prophage 3
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	588705	659419	4119604	tRNA,protease,coat,transposase	Streptococcus_phage(33.33%)	56	NA	NA
AVB32665.1|588705_589422_+|protease	protease PrsW	protease	NA	NA	NA	NA
AVB32666.1|589500_590811_+	methylase	NA	NA	NA	NA	NA
AVB32667.1|590910_591447_+	signal peptidase I	NA	NA	NA	NA	NA
AVB32668.1|591612_592149_+	signal peptidase I	NA	NA	NA	NA	NA
AVB32669.1|592158_592914_+	endonuclease	NA	NA	NA	NA	NA
AVB32670.1|592987_594655_+	nucleoside kinase	NA	NA	NA	NA	NA
AVB32671.1|595235_596165_+	glutaminase	NA	NA	NA	NA	NA
AVB32672.1|596262_596826_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AVB32673.1|597313_598150_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
AVB32674.1|598401_599397_+	aldo/keto reductase	NA	NA	NA	NA	NA
AVB32675.1|599653_600058_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
AVB32676.1|600218_600410_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32677.1|601057_601972_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVB32678.1|602077_604315_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
AVB35708.1|604946_605564_+	endonuclease III	NA	NA	NA	NA	NA
AVB32679.1|605757_606228_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVB32680.1|606263_607112_+	DegV family protein	NA	NA	NA	NA	NA
AVB32681.1|607467_608472_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB32682.1|608596_609709_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVB32683.1|610131_610893_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32684.1|610895_611714_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32685.1|611893_612496_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVB32686.1|613358_615278_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AVB35709.1|616707_616857_-	hypothetical protein	NA	NA	NA	NA	NA
AVB32687.1|617213_618332_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
AVB32688.1|619329_620367_-	hypothetical protein	NA	NA	NA	NA	NA
AVB32689.1|620359_621046_-	hypothetical protein	NA	NA	NA	NA	NA
AVB32690.1|621057_621378_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB32691.1|621738_623079_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AVB32692.1|623756_624326_-	hydrolase	NA	NA	NA	NA	NA
AVB32693.1|624486_625737_-	MFS transporter	NA	NA	NA	NA	NA
AVB32694.1|626028_626616_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB32695.1|626937_628398_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AVB32696.1|628771_629377_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AVB32697.1|629379_631947_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AVB32698.1|631939_632104_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32699.1|633212_633488_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32700.1|633507_633795_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32701.1|635349_636459_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AVB32702.1|636523_638647_+	ATP-binding protein	NA	NA	NA	NA	NA
AVB32703.1|638661_643872_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32704.1|644096_646196_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AVB32705.1|646238_646634_-	hypothetical protein	NA	NA	NA	NA	NA
AVB32706.1|647694_647883_+	hypothetical protein	NA	NA	NA	NA	NA
AVB32707.1|648067_648508_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB32708.1|648843_650157_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AVB32709.1|650174_650711_+	chromosome partitioning protein ParB	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AVB32710.1|651229_651451_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB32711.1|651450_651714_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB32712.1|651775_652348_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB32713.1|653165_653699_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
AVB32714.1|653923_654103_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVB35710.1|654709_654958_-	hypothetical protein	NA	NA	NA	NA	NA
AVB32715.1|655805_656219_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
AVB32716.1|656293_656803_+	GrpB family protein	NA	NA	NA	NA	NA
AVB32717.1|658309_659419_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 4
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	1402883	1465782	4119604	portal,protease,tail,tRNA,plate	Clostridium_phage(46.15%)	61	NA	NA
AVB33349.1|1402883_1403618_+|protease	Clp protease	protease	NA	NA	NA	NA
AVB33350.1|1403740_1406152_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AVB33351.1|1406154_1407213_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AVB33352.1|1407206_1408541_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AVB33353.1|1408527_1409070_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AVB33354.1|1409357_1410404_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AVB35728.1|1410579_1412121_+	ribonuclease Y	NA	NA	NA	NA	NA
AVB33355.1|1412755_1414537_+	DNA helicase	NA	NA	NA	NA	NA
AVB33356.1|1414618_1415149_-	signal peptidase I	NA	NA	NA	NA	NA
AVB33357.1|1415188_1416013_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AVB33358.1|1416269_1417178_+	recombinase	NA	NA	NA	NA	NA
AVB33359.1|1417321_1418767_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AVB33360.1|1419077_1419530_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB33361.1|1419942_1421520_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AVB33362.1|1421678_1422431_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AVB35729.1|1422569_1423910_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AVB33363.1|1424021_1425218_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AVB33364.1|1425602_1426553_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AVB33365.1|1426713_1427466_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
AVB33366.1|1427557_1428334_-	exonuclease	NA	NA	NA	NA	NA
AVB33367.1|1428648_1430547_+	glutamine synthetase	NA	NA	NA	NA	NA
AVB35730.1|1430674_1431796_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AVB33368.1|1431994_1432327_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AVB33369.1|1432313_1433372_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVB33370.1|1433364_1434435_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33371.1|1434536_1435073_+	lipoprotein	NA	NA	NA	NA	NA
AVB33372.1|1435189_1435897_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
AVB33373.1|1435898_1436615_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AVB33374.1|1436616_1437375_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AVB33375.1|1437518_1438907_+	sensor histidine kinase	NA	NA	NA	NA	NA
AVB33376.1|1438982_1439804_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AVB33377.1|1440054_1441209_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AVB33378.1|1441391_1441592_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AVB33379.1|1442012_1442441_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AVB33380.1|1442583_1443339_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVB33381.1|1443459_1443876_-	hypothetical protein	NA	NA	NA	NA	NA
AVB33382.1|1444039_1444546_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AVB33383.1|1444627_1444948_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AVB33384.1|1445116_1445314_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVB33385.1|1445418_1445859_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AVB33386.1|1446107_1446551_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AVB33387.1|1446555_1447620_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AVB33388.1|1447633_1448062_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AVB33389.1|1448175_1448622_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AVB33390.1|1448648_1448816_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33391.1|1448815_1451269_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
AVB33392.1|1451268_1451691_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AVB33393.1|1451972_1453502_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AVB33394.1|1453517_1453844_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AVB33395.1|1453843_1454272_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AVB33396.1|1454264_1455317_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AVB33397.1|1455313_1456012_+	hypothetical protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AVB33398.1|1456012_1456999_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AVB33399.1|1457020_1462198_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AVB33400.1|1462214_1462568_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AVB33401.1|1462830_1463091_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AVB33402.1|1463315_1463771_-	hypothetical protein	NA	NA	NA	NA	NA
AVB33403.1|1463998_1464418_-	XRE family transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AVB33404.1|1464716_1464926_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AVB33405.1|1464945_1465167_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33406.1|1465383_1465782_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	1548474	1557019	4119604		Pandoravirus(33.33%)	10	NA	NA
AVB33474.1|1548474_1549059_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AVB33475.1|1549051_1550410_+	aminodeoxychorismate synthase, component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AVB33476.1|1550399_1551143_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AVB33477.1|1551176_1551878_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33478.1|1551903_1552476_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AVB33479.1|1552529_1553333_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
AVB35733.1|1553343_1553709_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AVB33480.1|1553701_1554208_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AVB33481.1|1554188_1554974_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AVB33482.1|1555228_1557019_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	1684433	1739564	4119604	integrase,holin,portal,head,capsid,terminase,tail	Clostridium_phage(78.18%)	67	1678436:1678451	1687656:1687671
1678436:1678451	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB33594.1|1684433_1685564_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AVB33595.1|1685642_1686350_-	DNA-binding protein	NA	NA	NA	NA	NA
AVB33596.1|1686362_1687232_-	protein kinase	NA	NA	NA	NA	NA
AVB33597.1|1687851_1688358_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687656:1687671	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
AVB33598.1|1688433_1688982_-	transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AVB33599.1|1688993_1689335_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AVB33600.1|1689511_1689715_+	transcriptional regulator	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AVB33601.1|1689762_1690572_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AVB33602.1|1690618_1690828_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33603.1|1690837_1691212_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AVB33604.1|1691287_1691485_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AVB33605.1|1691515_1691908_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AVB33606.1|1692108_1692546_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33607.1|1692557_1693724_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AVB33608.1|1693738_1694074_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33609.1|1694126_1694699_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AVB33610.1|1694721_1695294_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AVB33611.1|1695293_1697252_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AVB33612.1|1697263_1699681_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AVB33613.1|1699962_1700289_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AVB33614.1|1700237_1701608_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AVB33615.1|1701761_1702241_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AVB33616.1|1703267_1704242_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33617.1|1704478_1704772_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33618.1|1704841_1705534_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AVB35739.1|1705523_1706765_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
AVB33619.1|1706770_1708213_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AVB33620.1|1708202_1709738_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	71.9	2.5e-194
AVB33621.1|1709739_1709988_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33622.1|1710055_1710619_+	scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AVB33623.1|1710630_1711521_+|capsid	capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AVB33624.1|1711539_1711773_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AVB33625.1|1711782_1712184_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AVB33626.1|1712177_1712525_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AVB33627.1|1712524_1712815_+	hypothetical protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AVB33628.1|1712924_1713731_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AVB33629.1|1714079_1714517_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AVB33630.1|1714509_1714686_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
AVB33631.1|1714686_1715997_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AVB33632.1|1716013_1716484_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
AVB33633.1|1716542_1717370_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AVB33634.1|1717441_1717882_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AVB33635.1|1717881_1718076_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33636.1|1718222_1718384_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AVB33637.1|1719720_1719909_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
AVB33638.1|1720027_1720894_+	phage repressor protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AVB33639.1|1720946_1721081_+	hypothetical protein	NA	NA	NA	NA	NA
AVB33640.1|1721758_1722286_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AVB33641.1|1722423_1723191_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AVB33642.1|1723256_1725629_+	hypothetical protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
AVB33643.1|1725645_1726335_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AVB33644.1|1726327_1728220_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AVB33645.1|1728233_1728494_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AVB33646.1|1728498_1728918_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AVB33647.1|1728918_1729968_+|tail	phage tail protein	tail	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AVB33648.1|1729960_1730578_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AVB33649.1|1730589_1731615_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AVB33650.1|1731631_1733158_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AVB33651.1|1733172_1733466_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AVB33652.1|1733465_1733648_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AVB33653.1|1733681_1734248_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AVB33654.1|1734278_1734569_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AVB33655.1|1734572_1734830_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AVB33656.1|1735090_1735954_+	abortive infection bacteriophage resistance protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AVB33657.1|1736032_1736845_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AVB33658.1|1736938_1739338_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AVB33659.1|1739378_1739564_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 7
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	2597872	2624988	4119604	tRNA,protease,coat,transposase	Clostridium_phage(44.44%)	25	NA	NA
AVB34421.1|2597872_2598907_-|protease	protease	protease	NA	NA	NA	NA
AVB34422.1|2598899_2599274_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	50.8	1.4e-29
AVB34423.1|2601023_2601611_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AVB34424.1|2601676_2602711_-|protease	protease	protease	NA	NA	NA	NA
AVB34425.1|2602703_2603078_-	transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	2.8e-30
AVB34426.1|2603719_2604202_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AVB34427.1|2604493_2605198_-	hypothetical protein	NA	NA	NA	NA	NA
AVB34428.1|2605551_2606568_-	transglycosylase	NA	NA	NA	NA	NA
AVB34429.1|2606695_2607202_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
AVB34430.1|2607360_2608029_-	hypothetical protein	NA	NA	NA	NA	NA
AVB34431.1|2608441_2608948_-	flavin reductase	NA	NA	NA	NA	NA
AVB34432.1|2609318_2610347_-	exonuclease	NA	NA	NA	NA	NA
AVB34433.1|2610394_2611255_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.4	2.9e-30
AVB34434.1|2611533_2611743_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
AVB34435.1|2611742_2612009_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AVB34436.1|2612037_2612610_+	rubrerythrin family protein	NA	NA	NA	NA	NA
AVB34437.1|2612843_2614034_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
AVB34438.1|2614293_2614725_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
AVB34439.1|2614837_2617066_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
AVB34440.1|2617176_2617662_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVB34441.1|2617913_2619137_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AVB34442.1|2619140_2622275_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
AVB34443.1|2622296_2623607_+	multidrug transporter	NA	NA	NA	NA	NA
AVB34444.1|2623816_2624644_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
AVB34445.1|2624670_2624988_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	3845077	3858909	4119604	portal,transposase	Clostridioides_phage(69.23%)	18	NA	NA
AVB35428.1|3845077_3846217_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
AVB35429.1|3846549_3847125_+	hypothetical protein	NA	NA	NA	NA	NA
AVB35430.1|3847135_3847324_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AVB35431.1|3847518_3848076_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AVB35432.1|3848375_3849119_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
AVB35433.1|3849572_3850115_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
AVB35434.1|3850209_3851415_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AVB35435.1|3851392_3851560_+	hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AVB35790.1|3851630_3851813_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AVB35436.1|3851943_3852387_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AVB35437.1|3852604_3853048_-	hypothetical protein	NA	NA	NA	NA	NA
AVB35438.1|3853069_3853387_-	hypothetical protein	NA	NA	NA	NA	NA
AVB35791.1|3853576_3854239_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
AVB35439.1|3854270_3854813_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AVB35440.1|3855052_3855235_-	hypothetical protein	NA	NA	NA	NA	NA
AVB35441.1|3855262_3855874_-	hypothetical protein	NA	NA	NA	NA	NA
AVB35442.1|3856350_3857565_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AVB35443.1|3857751_3858909_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 9
CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	4030634	4046057	4119604		Streptococcus_phage(92.31%)	19	NA	NA
AVB35604.1|4030634_4030958_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AVB35605.1|4030972_4031356_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AVB35606.1|4031451_4031865_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
AVB35607.1|4031971_4032430_+	glyoxalase	NA	NA	NA	NA	NA
AVB35608.1|4032454_4032997_+	hypothetical protein	NA	NA	NA	NA	NA
AVB35796.1|4033053_4033560_+	hypothetical protein	NA	NA	NA	NA	NA
AVB35609.1|4033669_4035064_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AVB35797.1|4035343_4036465_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AVB35610.1|4036471_4036606_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AVB35611.1|4036606_4036828_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AVB35612.1|4037147_4037786_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AVB35613.1|4037862_4038051_+	hypothetical protein	NA	NA	NA	NA	NA
AVB35614.1|4038071_4038569_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AVB35615.1|4038584_4039088_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AVB35616.1|4039200_4039590_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AVB35617.1|4039576_4042009_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
AVB35618.1|4042008_4044144_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
AVB35619.1|4044140_4045148_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
AVB35620.1|4045163_4046057_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
