The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP024307	Sinorhizobium fredii strain NXT3 chromosome, complete genome	3967005	1662538	1676824	3967005	tRNA	uncultured_Mediterranean_phage(81.82%)	14	NA	NA
AUX76173.1|1662538_1663402_+	chromosome segregation/condensation ScpA-like protein	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.3	1.8e-32
AUX76174.1|1663394_1664120_+	chromosome segregation/condensation ScpB-like protein	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	42.9	8.9e-41
AUX76175.1|1664191_1665301_+	sulfate ABC transporter ATP-binding protein CysA 1	NA	Q6GZ03	Mycoplasma_phage	33.7	8.6e-11
AUX76176.1|1665392_1665599_+	Sec-independent protein translocase protein TatA	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.8e-08
AUX76177.1|1665669_1666383_+	Sec-independent protein translocase protein TatB	NA	NA	NA	NA	NA
AUX76178.1|1666379_1667222_+	Sec-independent protein translocase protein TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.0	1.3e-43
AUX76179.1|1667361_1668645_+|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.5	1.8e-100
AUX76180.1|1668671_1669442_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	32.8	1.1e-23
AUX76181.1|1669438_1670092_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.0	2.0e-15
AUX76182.1|1670311_1670962_+	biotin transporter regulator protein BioS	NA	NA	NA	NA	NA
AUX76183.1|1671126_1672659_+	peptidase M23 family protein	NA	Q8SBN9	Clostridium_phage	35.9	7.2e-16
AUX76184.1|1672686_1673562_-	P-loop NTPase domain-containing protein	NA	NA	NA	NA	NA
AUX76185.1|1673875_1674208_+	preprotein translocase YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	36.5	1.7e-10
AUX76186.1|1674256_1676824_+	preprotein translocase subunit SecDF 2	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	44.4	2.3e-54
>prophage 2
CP024307	Sinorhizobium fredii strain NXT3 chromosome, complete genome	3967005	1880987	1905775	3967005	portal,terminase,head	Sinorhizobium_phage(57.14%)	27	NA	NA
AUX76395.1|1880987_1881644_+	hypothetical protein	NA	F1C5D5	Cronobacter_phage	50.2	9.8e-55
AUX76396.1|1881921_1882386_+	hypothetical protein	NA	A0A125RNL6	Pseudomonas_phage	56.3	1.7e-37
AUX76397.1|1882372_1883770_+|terminase	phage terminase large subunit protein	terminase	D4N436	Pseudomonas_phage	38.9	4.2e-87
AUX76398.1|1883780_1884095_-	hypothetical protein	NA	NA	NA	NA	NA
AUX76399.1|1884189_1886055_+|portal	phage portal protein	portal	L7TRA1	Rhizobium_phage	53.8	5.2e-194
AUX76400.1|1886370_1887516_+	hypothetical protein	NA	A0A2R3UA67	Siphoviridae_environmental_samples	48.6	4.2e-77
AUX76401.1|1887515_1887953_+	hypothetical protein	NA	A0A2R3UAC1	Siphoviridae_environmental_samples	46.7	5.0e-23
AUX76402.1|1887968_1888922_+	hypothetical protein	NA	L7TMZ5	Rhizobium_phage	50.2	2.3e-73
AUX76403.1|1888934_1889390_+	hypothetical protein	NA	NA	NA	NA	NA
AUX76404.1|1889441_1889936_+	hypothetical protein	NA	A0A2R3UAR2	Siphoviridae_environmental_samples	43.6	4.5e-20
AUX76405.1|1889935_1890301_+	hypothetical protein	NA	A0A076G8G5	Sinorhizobium_phage	61.7	2.8e-35
AUX76406.1|1890783_1890948_+	hypothetical protein	NA	A0A076GD18	Sinorhizobium_phage	57.4	8.5e-08
AUX76407.1|1890947_1892000_+|head	phage head morphogenesis protein	head	A0A076G6I6	Sinorhizobium_phage	84.6	1.9e-156
AUX76408.1|1891999_1892461_+	hypothetical protein	NA	A0A076G8G8	Sinorhizobium_phage	77.2	4.6e-59
AUX76409.1|1892414_1892633_-	hypothetical protein	NA	NA	NA	NA	NA
AUX76410.1|1892650_1893082_+	bacteriophage-related domain-containing protein	NA	A0A076G7G6	Sinorhizobium_phage	79.7	5.8e-64
AUX76411.1|1893138_1893870_+	hypothetical protein	NA	A0A076GD25	Sinorhizobium_phage	80.7	1.7e-108
AUX76412.1|1893878_1894292_+	hypothetical protein	NA	A0A076G701	Sinorhizobium_phage	86.6	3.5e-58
AUX76413.1|1894243_1894492_-	hypothetical protein	NA	NA	NA	NA	NA
AUX76414.1|1894642_1897450_+	phage tape measure domain-containing protein	NA	A0A076G7H2	Sinorhizobium_phage	69.5	0.0e+00
AUX76415.1|1897452_1898217_+	hypothetical protein	NA	A0A076GD29	Sinorhizobium_phage	89.0	1.2e-133
AUX76416.1|1898216_1898819_+	hypothetical protein	NA	A0A076G707	Sinorhizobium_phage	95.0	3.2e-108
AUX76417.1|1898826_1899240_+	hypothetical protein	NA	A0A076G6J4	Sinorhizobium_phage	84.6	3.5e-66
AUX76418.1|1899254_1901423_+	hypothetical protein	NA	A0A076G8H4	Sinorhizobium_phage	86.4	0.0e+00
AUX76419.1|1901492_1903814_+	bacteriophage endosialidase protein	NA	NA	NA	NA	NA
AUX76420.1|1903814_1904048_-	hypothetical protein	NA	NA	NA	NA	NA
AUX76421.1|1904101_1905775_-	glycosyltransferase family 8 protein	NA	A0A097P286	Cydia_pomonella_granulosis_virus	24.5	2.8e-05
>prophage 3
CP024307	Sinorhizobium fredii strain NXT3 chromosome, complete genome	3967005	2296223	2309209	3967005	terminase	Sulfitobacter_phage(63.64%)	13	NA	NA
AUX76788.1|2296223_2297435_-	hypothetical protein	NA	A0A1Y0SVH2	Sinorhizobium_phage	52.6	1.1e-59
AUX76789.1|2297525_2298779_-	peptidase S74 family domain-containing protein	NA	M4NM77	Sulfitobacter_phage	29.8	1.3e-31
AUX76790.1|2298882_2299329_-	N-acetyltransferase family protein	NA	X2CY06	Brucella_phage	52.9	2.8e-37
AUX76791.1|2299325_2300951_-	hypothetical protein	NA	A0A088F6U1	Sulfitobacter_phage	39.4	2.8e-82
AUX76792.1|2300950_2301553_-	hypothetical protein	NA	A0A088FAT4	Sulfitobacter_phage	33.8	4.4e-17
AUX76793.1|2301549_2302146_-	hypothetical protein	NA	A0A088F6W5	Sulfitobacter_phage	35.4	1.7e-21
AUX76794.1|2302142_2302466_-	hypothetical protein	NA	F8TUS1	EBPR_podovirus	47.7	9.2e-22
AUX76795.1|2302462_2302639_-	hypothetical protein	NA	NA	NA	NA	NA
AUX76796.1|2302705_2303701_-	hypothetical protein	NA	A0A088FAT7	Sulfitobacter_phage	71.6	1.8e-129
AUX76797.1|2303848_2304793_-	hypothetical protein	NA	A0A088F6W8	Sulfitobacter_phage	33.3	1.0e-28
AUX76798.1|2304950_2305187_-	hypothetical protein	NA	NA	NA	NA	NA
AUX76799.1|2305724_2307779_-	hypothetical protein	NA	A0A088F830	Sulfitobacter_phage	57.8	3.3e-197
AUX76800.1|2307778_2309209_-|terminase	phage terminase large subunit protein	terminase	C8CLI4	Xylella_phage	65.5	1.5e-169
>prophage 1
CP024309	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence	499999	250414	331180	499999	transposase,tRNA,integrase	Acidithiobacillus_phage(30.77%)	94	287375:287391	307794:307810
AUX78905.1|250414_251158_-|transposase	ISNCY family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78906.1|251297_252299_-|transposase	IS30 family insertion sequence transposase protein	transposase	Q9MBM9	Staphylococcus_prophage	33.4	1.3e-42
AUX78907.1|252500_253412_-	OmpA/MotB family outer membrane protein	NA	NA	NA	NA	NA
AUX78908.1|253398_254640_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78909.1|254650_255943_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78910.1|255953_256415_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78911.1|256654_256822_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78912.1|257128_257638_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78913.1|257666_257861_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78914.1|257979_258153_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78915.1|259239_259503_+|transposase	IS21 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78916.1|259477_260383_-|transposase	IS256 family insertion sequence transposase domain-containing protein	transposase	A0A220NQR7	Corynebacterium_phage	48.8	5.0e-73
AUX78917.1|260478_260976_+|transposase	IS21 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78918.1|261184_261922_-|transposase	IS21 family insertion sequence transposase IstB-like ATP-binding protein	transposase	K4HZD4	Acidithiobacillus_phage	43.3	1.0e-47
AUX78919.1|261934_263464_-|transposase	IS21 family insertion sequence transposase protein	transposase	K4I413	Acidithiobacillus_phage	39.3	2.1e-84
AUX78920.1|263682_263907_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78921.1|264149_264353_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78922.1|264349_264592_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78923.1|264741_265176_-	GCN5-related N-acetyltransferase protein	NA	NA	NA	NA	NA
AUX78924.1|265212_266373_-|transposase	IS66 family insertion sequence transposase protein	transposase	A0A218MNE7	uncultured_virus	33.5	1.4e-27
AUX78925.1|266415_267897_-	DmpA family peptidase protein	NA	M1PM12	Moumouvirus	33.1	2.8e-33
AUX78926.1|267952_269386_-	amidase protein	NA	NA	NA	NA	NA
AUX78927.1|269437_269755_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78928.1|269861_270200_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78929.1|270367_270712_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78930.1|270708_271230_-|transposase	IS5 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78931.1|271447_272551_+|transposase	IS21 family insertion sequence transposase protein	transposase	U5N3F9	Enterobacteria_phage	34.2	1.2e-33
AUX78932.1|272592_272766_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78933.1|273079_273520_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78934.1|273668_274007_-|transposase	IS3 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78935.1|274027_275104_-	D-alanine--D-alanine ligase protein	NA	NA	NA	NA	NA
AUX78936.1|275234_275687_-	aspartate 1-decarboxylase 1	NA	NA	NA	NA	NA
AUX78937.1|275869_276127_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78938.1|276178_276385_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78939.1|276753_277260_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78940.1|279830_280286_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78941.1|280282_280540_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78942.1|280775_282419_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
AUX78943.1|282927_285111_-	malate synthase G 2	NA	NA	NA	NA	NA
AUX78944.1|285124_286378_-	D-amino acid dehydrogenase small subunit 1	NA	NA	NA	NA	NA
AUX78945.1|286538_286751_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78946.1|287032_287446_-	hypothetical protein	NA	NA	NA	NA	NA
287375:287391	attL	TATACGAGCGTCGCGGC	NA	NA	NA	NA
AUX78947.1|287714_288263_-	XRE family transcriptional regulator protein	NA	NA	NA	NA	NA
AUX78948.1|288438_289707_+	histidinol dehydrogenase 2	NA	NA	NA	NA	NA
AUX78949.1|290220_290499_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78950.1|290715_290943_+|transposase	IS66 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78951.1|291068_292346_-|integrase	integrase/recombinase family protein	integrase	NA	NA	NA	NA
AUX78952.1|293799_294477_+	SAM-dependent methyltransferase protein	NA	NA	NA	NA	NA
AUX78953.1|295587_295833_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78954.1|295829_296015_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78955.1|296896_297067_-|transposase	IS30 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78956.1|297083_298253_+	Xaa-Pro aminopeptidase protein	NA	NA	NA	NA	NA
AUX78957.1|298412_298664_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78958.1|299043_299238_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78959.1|299255_300086_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUX78960.1|300136_301111_+	amino acid ABC transporter permease protein	NA	NA	NA	NA	NA
AUX78961.1|301107_301977_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	1.0e-27
AUX78962.1|302291_303014_+	Asp/Glu/hydantoin racemase protein	NA	NA	NA	NA	NA
AUX78963.1|303171_304359_-	2-amino-3-ketobutyrate coenzyme A ligase 2	NA	V5LQ39	Emiliania_huxleyi_virus	26.6	1.0e-33
AUX78964.1|304443_305403_-	aminotransferase protein	NA	NA	NA	NA	NA
AUX78965.1|305640_306174_-	AsnC family transcriptional regulator protein	NA	NA	NA	NA	NA
AUX78966.1|306479_306701_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78967.1|306838_307015_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78968.1|307036_308251_-	beta-lactamase/transpeptidase-like protein	NA	NA	NA	NA	NA
307794:307810	attR	TATACGAGCGTCGCGGC	NA	NA	NA	NA
AUX78969.1|308562_309387_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUX78970.1|309478_309652_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78971.1|309910_310621_+|transposase	IS5 family insertion sequence transposase domain-containing protein	transposase	K4ICS3	Acidithiobacillus_phage	41.3	3.6e-18
AUX78972.1|311023_312190_+	peptidase M20 family protein	NA	NA	NA	NA	NA
AUX78973.1|312176_312362_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78974.1|312650_313442_+	pantothenate synthetase domain-containing protein	NA	NA	NA	NA	NA
AUX78975.1|313347_314517_+	ectoine utilization EutD protein	NA	NA	NA	NA	NA
AUX78976.1|314525_314714_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78977.1|314910_315249_+|transposase	IS66 family insertion sequence transposase protein	transposase	NA	NA	NA	NA
AUX78978.1|315245_315461_+|transposase	IS66 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78979.1|315659_316250_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78980.1|316323_317070_-|transposase	IS21 family insertion sequence transposase IstB-like ATP-binding protein	transposase	K4HZD4	Acidithiobacillus_phage	45.8	1.5e-54
AUX78981.1|318648_319119_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78982.1|319259_319427_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78983.1|319640_319862_-|transposase	IS110 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78984.1|319860_320700_+|transposase	IS66 family insertion sequence transposase domain-containing protein	transposase	NA	NA	NA	NA
AUX78985.1|320860_321136_+	microcystin LR degradation MlrC domain-containing protein	NA	NA	NA	NA	NA
AUX78986.1|321104_321668_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78987.1|321664_322498_-|transposase	IS66 family insertion sequence transposase domain-containing protein	transposase	A0A0P0ZBS5	Stx2-converting_phage	40.0	6.4e-35
AUX78988.1|322567_322924_-|transposase	IS66 family insertion sequence transposase protein	transposase	NA	NA	NA	NA
AUX78989.1|322920_323376_-|transposase	IS66 family insertion sequence transposase protein	transposase	NA	NA	NA	NA
AUX78990.1|323440_323635_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78991.1|323919_324732_-	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA 1	NA	G9BWD6	Planktothrix_phage	37.4	4.8e-27
AUX78992.1|324734_325406_-	ectoine/hydroxyectoine ABC transporter permease protein EhuD 1	NA	NA	NA	NA	NA
AUX78993.1|325407_326073_-	ectoine/hydroxyectoine ABC transporter permease protein EhuC 1	NA	NA	NA	NA	NA
AUX78994.1|326141_326981_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB 1	NA	NA	NA	NA	NA
AUX78995.1|327574_327748_-	hypothetical protein	NA	NA	NA	NA	NA
AUX78996.1|327805_328141_+	hypothetical protein	NA	NA	NA	NA	NA
AUX78997.1|328779_330045_+	biotin carboxylase-like ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
AUX78998.1|330220_331180_+|tRNA	glutamyl-tRNA reductase protein	tRNA	NA	NA	NA	NA
