assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002902965.1_ASM290296v1	CP026105	Paraburkholderia hospita strain DSM 17164 chromosome 1, complete sequence	1	655921-656003	1	CRISPRCasFinder	no		cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	Orphan	ACGAAGGCATAACGCGGATGCCAG	24	1	2	655945-655979|655945-655979	CP026106.1_844094-844060|CP026107.1_2151274-2151308	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA,NA	NA|184aa|up_9|CP026105.1_646587_647139_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|385aa|up_8|CP026105.1_647189_648344_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|405aa|up_7|CP026105.1_648445_649660_-	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|213aa|up_6|CP026105.1_649836_650475_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|287aa|up_5|CP026105.1_650686_651547_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|283aa|up_4|CP026105.1_651626_652475_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|294aa|up_3|CP026105.1_652593_653475_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|79aa|up_2|CP026105.1_653638_653875_+	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown]	NA|134aa|up_1|CP026105.1_653874_654276_+	cd18736, PIN_CcVapC1-like, VapC-like PIN domain of Caulobacter Crescentus VapC1-like and related proteins	NA|294aa|up_0|CP026105.1_654341_655223_+	PRK11453, PRK11453, O-acetylserine/cysteine exporter	NA|520aa|down_0|CP026105.1_656055_657615_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|185aa|down_1|CP026105.1_657596_658151_-	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|419aa|down_2|CP026105.1_658168_659425_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|157aa|down_3|CP026105.1_659458_659929_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|312aa|down_4|CP026105.1_659925_660861_+	PRK00283, xerD, tyrosine recombinase	NA|524aa|down_5|CP026105.1_660885_662457_-	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|164aa|down_6|CP026105.1_662655_663147_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|214aa|down_7|CP026105.1_663290_663932_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|162aa|down_8|CP026105.1_664015_664501_-	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed	NA|347aa|down_9|CP026105.1_664669_665710_+	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase
GCA_002902965.1_ASM290296v1	CP026105	Paraburkholderia hospita strain DSM 17164 chromosome 1, complete sequence	2	1521879-1521956	2	CRISPRCasFinder	no		cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	Orphan	CGCTAAAGCGCCAACTCCGGTCGAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA|101aa|up_5|CP026105.1_1516484_1516787_-,NA|89aa|down_8|CP026105.1_1528866_1529133_+	NA|447aa|up_9|CP026105.1_1512178_1513519_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|282aa|up_8|CP026105.1_1513677_1514523_-	cd07576, R-amidase_like, Pseudomonas sp	NA|273aa|up_7|CP026105.1_1514708_1515527_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|223aa|up_6|CP026105.1_1515634_1516303_-	PRK11280, PRK11280, hypothetical protein; Provisional	NA|101aa|up_5|CP026105.1_1516484_1516787_-	NA	NA|134aa|up_4|CP026105.1_1516879_1517281_+	PRK10203, PRK10203, hypothetical protein; Provisional	NA|228aa|up_3|CP026105.1_1517277_1517961_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|309aa|up_2|CP026105.1_1517974_1518901_+	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional	NA|239aa|up_1|CP026105.1_1519230_1519947_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|499aa|up_0|CP026105.1_1520333_1521830_+	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain	NA|286aa|down_0|CP026105.1_1521968_1522826_+	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism]	NA|318aa|down_1|CP026105.1_1522980_1523934_+	TIGR03212, uraD_N-term-dom, putative urate catabolism protein	NA|174aa|down_2|CP026105.1_1523930_1524452_+	TIGR03164, UHCUDC, OHCU decarboxylase	NA|338aa|down_3|CP026105.1_1524529_1525543_+	PRK13257, PRK13257, allantoicase; Provisional	NA|171aa|down_4|CP026105.1_1525539_1526052_+	PRK03606, PRK03606, ureidoglycolate lyase	NA|123aa|down_5|CP026105.1_1526243_1526612_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|398aa|down_6|CP026105.1_1526731_1527925_-	pfam06181, Urate_ox_N, Urate oxidase N-terminal	NA|118aa|down_7|CP026105.1_1528153_1528507_-	COG2351, COG2351, Transthyretin-like protein [General function prediction only]	NA|89aa|down_8|CP026105.1_1528866_1529133_+	NA	NA|470aa|down_9|CP026105.1_1529129_1530539_+	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed
GCA_002902965.1_ASM290296v1	CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	1	676728-676808	1	CRISPRCasFinder	no	WYL	csa3,WYL,cas3,DinG	Unclear	CGCGGATGCCAGCGCAAAGGCCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA,NA|152aa|down_7|CP026106.1_685146_685602_+	NA|650aa|up_9|CP026106.1_661902_663852_-	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|373aa|up_8|CP026106.1_664304_665423_+	COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	NA|326aa|up_7|CP026106.1_665498_666476_+	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|335aa|up_6|CP026106.1_666515_667520_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|up_5|CP026106.1_667535_668648_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|325aa|up_4|CP026106.1_668650_669625_+	PRK12928, PRK12928, lipoyl synthase; Provisional	NA|489aa|up_3|CP026106.1_670337_671804_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|428aa|up_2|CP026106.1_672609_673893_-	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase	NA|519aa|up_1|CP026106.1_674013_675570_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|279aa|up_0|CP026106.1_675586_676423_-	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|278aa|down_0|CP026106.1_676842_677676_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|323aa|down_1|CP026106.1_677672_678641_-	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein	NA|290aa|down_2|CP026106.1_678695_679565_-	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|345aa|down_3|CP026106.1_679851_680886_+	cd03862, M14-like, Peptidase M14-like domain; uncharacterized subfamily	NA|279aa|down_4|CP026106.1_680882_681719_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|410aa|down_5|CP026106.1_682467_683697_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|410aa|down_6|CP026106.1_683714_684944_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|152aa|down_7|CP026106.1_685146_685602_+	NA	NA|238aa|down_8|CP026106.1_685605_686319_+	cd02423, Peptidase_C39G, A sub-family of peptidase family C39	NA|504aa|down_9|CP026106.1_686327_687839_+	PRK10811, rne, ribonuclease E; Reviewed
GCA_002902965.1_ASM290296v1	CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	2	844737-844819	2	CRISPRCasFinder	no		csa3,WYL,cas3,DinG	Orphan	CGCGGATGCCAGCGAAAAGCCAAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA|112aa|up_3|CP026106.1_841943_842279_+,NA|105aa|up_2|CP026106.1_842321_842636_-,NA|113aa|up_1|CP026106.1_842773_843112_-,NA	NA|302aa|up_9|CP026106.1_836008_836914_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|322aa|up_8|CP026106.1_837262_838228_+	PRK13970, PRK13970, 4-hydroxyproline epimerase	NA|376aa|up_7|CP026106.1_838224_839352_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|91aa|up_6|CP026106.1_839344_839617_+	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|431aa|up_5|CP026106.1_839613_840906_+	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|259aa|up_4|CP026106.1_841061_841838_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|112aa|up_3|CP026106.1_841943_842279_+	NA	NA|105aa|up_2|CP026106.1_842321_842636_-	NA	NA|113aa|up_1|CP026106.1_842773_843112_-	NA	NA|149aa|up_0|CP026106.1_843501_843948_+	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed	NA|228aa|down_0|CP026106.1_844851_845535_-	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain	NA|426aa|down_1|CP026106.1_845651_846929_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|1026aa|down_2|CP026106.1_847298_850376_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|408aa|down_3|CP026106.1_850369_851593_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|267aa|down_4|CP026106.1_851623_852424_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|330aa|down_5|CP026106.1_852446_853436_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|343aa|down_6|CP026106.1_853569_854598_-	cd19973, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein	NA|301aa|down_7|CP026106.1_855039_855942_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|797aa|down_8|CP026106.1_856187_858578_+	cd16916, HATPase_CheA-like, Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases	NA|247aa|down_9|CP026106.1_858595_859336_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)
GCA_002902965.1_ASM290296v1	CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	3	961305-961496	1	CRT	no		csa3,WYL,cas3,DinG	Orphan	CGCGGATGCCAGCGAAAA	18	0	0	NA	NA	NA	3	3	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA,NA|132aa|down_6|CP026106.1_969937_970333_+	NA|415aa|up_9|CP026106.1_951408_952653_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|260aa|up_8|CP026106.1_952772_953552_-	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|322aa|up_7|CP026106.1_953887_954853_+	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|215aa|up_6|CP026106.1_954943_955588_+	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown]	NA|66aa|up_5|CP026106.1_955651_955849_+	pfam07866, DUF1653, Protein of unknown function (DUF1653)	NA|125aa|up_4|CP026106.1_955859_956234_-	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|379aa|up_3|CP026106.1_956239_957376_-	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family	NA|649aa|up_2|CP026106.1_957478_959425_-	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|89aa|up_1|CP026106.1_959730_959997_+	pfam11177, DUF2964, Protein of unknown function (DUF2964)	NA|97aa|up_0|CP026106.1_960307_960598_+	pfam07369, DUF1488, Protein of unknown function (DUF1488)	NA|739aa|down_0|CP026106.1_961514_963731_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|331aa|down_1|CP026106.1_963727_964720_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|261aa|down_2|CP026106.1_964733_965516_-	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|431aa|down_3|CP026106.1_965928_967221_-	PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional	NA|288aa|down_4|CP026106.1_967625_968489_+	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS)	NA|377aa|down_5|CP026106.1_968814_969945_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|132aa|down_6|CP026106.1_969937_970333_+	NA	NA|149aa|down_7|CP026106.1_970370_970817_+	pfam04519, Bactofilin, Polymer-forming cytoskeletal	NA|690aa|down_8|CP026106.1_970839_972909_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|145aa|down_9|CP026106.1_973099_973534_-	cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily
GCA_002902965.1_ASM290296v1	CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	4	983975-984060	3	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DinG	Type I-A	CGCGGATGCCAGCGCAAACACAAGCAAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA|74aa|up_4|CP026106.1_979392_979614_-,NA|143aa|up_2|CP026106.1_980869_981298_+,NA|93aa|down_8|CP026106.1_992872_993151_-,NA|121aa|down_9|CP026106.1_993382_993745_-	NA|322aa|up_9|CP026106.1_973632_974598_+	PRK09393, ftrA, transcriptional activator FtrA; Provisional	NA|191aa|up_8|CP026106.1_974637_975210_+	pfam04891, NifQ, NifQ	NA|357aa|up_7|CP026106.1_975712_976783_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|380aa|up_6|CP026106.1_977093_978233_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|308aa|up_5|CP026106.1_978374_979298_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|74aa|up_4|CP026106.1_979392_979614_-	NA	NA|303aa|up_3|CP026106.1_979752_980661_-	PRK10797, PRK10797, glutamate and aspartate transporter subunit; Provisional	NA|143aa|up_2|CP026106.1_980869_981298_+	NA	NA|311aa|up_1|CP026106.1_981307_982240_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|286aa|up_0|CP026106.1_982371_983229_+	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs	NA|775aa|down_0|CP026106.1_984095_986420_-	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|476aa|down_1|CP026106.1_986613_988041_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|103aa|down_2|CP026106.1_988070_988379_+	smart00346, HTH_ICLR, helix_turn_helix isocitrate lyase regulation	NA|385aa|down_3|CP026106.1_988433_989588_-	pfam04632, FUSC, Fusaric acid resistance protein family	NA|204aa|down_4|CP026106.1_989618_990230_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|179aa|down_5|CP026106.1_990341_990878_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|354aa|down_6|CP026106.1_990950_992012_-	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	csa3|110aa|down_7|CP026106.1_992088_992418_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|93aa|down_8|CP026106.1_992872_993151_-	NA	NA|121aa|down_9|CP026106.1_993382_993745_-	NA
GCA_002902965.1_ASM290296v1	CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	5	1814689-1814768	4	CRISPRCasFinder	no		csa3,WYL,cas3,DinG	Orphan	CACGAAGGCATAACGCGGATGCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA,NA	NA|814aa|up_9|CP026106.1_1800404_1802846_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|432aa|up_8|CP026106.1_1802869_1804165_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|253aa|up_7|CP026106.1_1805315_1806074_+	pfam17172, GST_N_4, Glutathione S-transferase N-terminal domain	NA|213aa|up_6|CP026106.1_1806202_1806841_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|334aa|up_5|CP026106.1_1806865_1807867_-	TIGR01370, Uncharacterized_protein_DR_0705, extracellular protein	NA|773aa|up_4|CP026106.1_1807938_1810257_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|278aa|up_3|CP026106.1_1810348_1811182_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|224aa|up_2|CP026106.1_1811276_1811948_-	PRK10995, PRK10995, MarC family NAAT transporter	NA|71aa|up_1|CP026106.1_1812261_1812474_+	pfam11755, DUF3311, Protein of unknown function (DUF3311)	NA|493aa|up_0|CP026106.1_1812470_1813949_+	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	NA|241aa|down_0|CP026106.1_1814820_1815543_-	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|246aa|down_1|CP026106.1_1815539_1816277_-	PRK08057, PRK08057, cobalt-precorrin-6x reductase; Reviewed	NA|367aa|down_2|CP026106.1_1816273_1817374_-	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed	NA|403aa|down_3|CP026106.1_1817373_1818582_-	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]	NA|451aa|down_4|CP026106.1_1819076_1820429_+	TIGR02435, Precorrin-3B_synthase, precorrin-3B synthase	NA|209aa|down_5|CP026106.1_1820421_1821048_+	PRK08285, cobH, precorrin-8X methylmutase; Reviewed	NA|253aa|down_6|CP026106.1_1821047_1821806_+	PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed	NA|579aa|down_7|CP026106.1_1821793_1823530_+	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH)	NA|318aa|down_8|CP026106.1_1823691_1824645_+	pfam12945, YcgR_2, Flagellar protein YcgR	NA|314aa|down_9|CP026106.1_1824750_1825692_-	PRK10808, PRK10808, outer membrane protein A; Reviewed
GCA_002902965.1_ASM290296v1	CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	6	3071287-3071368	5	CRISPRCasFinder	no		csa3,WYL,cas3,DinG	Orphan	GTCGATGGGAGTTAGCGCTTCAGCGCT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA,NA|181aa|down_1|CP026106.1_3073448_3073991_+	NA|152aa|up_9|CP026106.1_3060949_3061405_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|283aa|up_8|CP026106.1_3062292_3063141_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|248aa|up_7|CP026106.1_3063215_3063959_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|277aa|up_6|CP026106.1_3064047_3064878_-	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|347aa|up_5|CP026106.1_3064894_3065935_-	cd19161, AKR_AKR15A1, Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD) and similar proteins	NA|427aa|up_4|CP026106.1_3065988_3067269_-	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus	NA|106aa|up_3|CP026106.1_3067324_3067642_-	cd11613, SAF_AH_GD, Domains similar to fish antifreeze type III protein	NA|345aa|up_2|CP026106.1_3067643_3068678_-	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|509aa|up_1|CP026106.1_3068667_3070194_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|336aa|up_0|CP026106.1_3070214_3071222_-	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily	NA|267aa|down_0|CP026106.1_3071652_3072453_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|181aa|down_1|CP026106.1_3073448_3073991_+	NA	NA|809aa|down_2|CP026106.1_3073999_3076426_-	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain	NA|290aa|down_3|CP026106.1_3076766_3077636_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|534aa|down_4|CP026106.1_3077726_3079328_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|354aa|down_5|CP026106.1_3079530_3080592_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|870aa|down_6|CP026106.1_3080762_3083372_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|244aa|down_7|CP026106.1_3083604_3084336_-	PRK09926, PRK09926, fimbrial chaperone	NA|190aa|down_8|CP026106.1_3084429_3084999_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|352aa|down_9|CP026106.1_3085449_3086505_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]
GCA_002902965.1_ASM290296v1	CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	7	3127468-3127577	6	CRISPRCasFinder	no		csa3,WYL,cas3,DinG	Orphan	TTCGTGCTTCAAGCGTCGCCCCTGT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA|86aa|up_4|CP026106.1_3121232_3121490_-,NA	NA|330aa|up_9|CP026106.1_3115855_3116845_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|569aa|up_8|CP026106.1_3116900_3118607_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|101aa|up_7|CP026106.1_3118794_3119097_+	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|405aa|up_6|CP026106.1_3119273_3120488_+	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|200aa|up_5|CP026106.1_3120503_3121103_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|86aa|up_4|CP026106.1_3121232_3121490_-	NA	NA|728aa|up_3|CP026106.1_3121641_3123825_-	cd14962, NHL_like_6, Uncharacterized NHL-repeat domain in bacterial proteins	NA|300aa|up_2|CP026106.1_3124056_3124956_-	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|328aa|up_1|CP026106.1_3125061_3126045_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|375aa|up_0|CP026106.1_3126273_3127398_+	PRK07324, PRK07324, transaminase; Validated	NA|1005aa|down_0|CP026106.1_3128291_3131306_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|250aa|down_1|CP026106.1_3131345_3132095_-	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|429aa|down_2|CP026106.1_3132112_3133399_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|407aa|down_3|CP026106.1_3133671_3134892_-	PLN02409, PLN02409, serine--glyoxylate aminotransaminase	NA|242aa|down_4|CP026106.1_3135035_3135761_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|448aa|down_5|CP026106.1_3135815_3137159_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|316aa|down_6|CP026106.1_3137221_3138169_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|398aa|down_7|CP026106.1_3138165_3139359_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|309aa|down_8|CP026106.1_3139469_3140396_-	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|372aa|down_9|CP026106.1_3140618_3141734_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane
GCA_002902965.1_ASM290296v1	CP026107	Paraburkholderia hospita strain DSM 17164 chromosome 3, complete sequence	1	1670525-1670611	1	CRISPRCasFinder	no		csa3	Orphan	TAACGCGGATGCCAGCGCAGAGGCAAA	27	1	1	1670552-1670584	CP026105.1_1611094-1611126	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA,NA|312aa|down_7|CP026107.1_1678619_1679555_-	NA|244aa|up_9|CP026107.1_1658843_1659575_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|438aa|up_8|CP026107.1_1659590_1660904_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|253aa|up_7|CP026107.1_1660978_1661737_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|176aa|up_6|CP026107.1_1661740_1662268_-	cd20302, cupin_DAD, 2,4'-Dihydroxyacetophenone dioxygenase (DAD), cupin domain	NA|327aa|up_5|CP026107.1_1662414_1663395_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|405aa|up_4|CP026107.1_1664419_1665634_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|340aa|up_3|CP026107.1_1665756_1666776_-	PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional	NA|279aa|up_2|CP026107.1_1667057_1667894_+	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional	NA|266aa|up_1|CP026107.1_1667928_1668726_+	TIGR01832, 2-dehydro-3-deoxy-D-gluconate_5-dehydrogenase, 2-deoxy-D-gluconate 3-dehydrogenase	NA|295aa|up_0|CP026107.1_1668823_1669708_+	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional	NA|299aa|down_0|CP026107.1_1670697_1671594_-	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|293aa|down_1|CP026107.1_1671713_1672592_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|473aa|down_2|CP026107.1_1672619_1674038_+	PRK12466, PRK12466, 3-isopropylmalate dehydratase large subunit	NA|205aa|down_3|CP026107.1_1674034_1674649_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|443aa|down_4|CP026107.1_1674773_1676102_+	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|230aa|down_5|CP026107.1_1676376_1677066_+	pfam09770, PAT1, Topoisomerase II-associated protein PAT1	NA|491aa|down_6|CP026107.1_1677150_1678623_-	pfam13372, Alginate_exp, Alginate export	NA|312aa|down_7|CP026107.1_1678619_1679555_-	NA	NA|250aa|down_8|CP026107.1_1679613_1680363_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|79aa|down_9|CP026107.1_1680344_1680581_-	pfam07235, DUF1427, Protein of unknown function (DUF1427)
GCA_002902965.1_ASM290296v1	CP026107	Paraburkholderia hospita strain DSM 17164 chromosome 3, complete sequence	2	2252952-2253033	2	CRISPRCasFinder	no		csa3	Orphan	CACGAAGGCAACACGCGGATGCCAGC	26	1	2	2252978-2253007|2252978-2253007	CP026105.1_2700630-2700601|CP026106.1_261249-261278	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA|188aa|up_6|CP026107.1_2242954_2243518_-,NA	NA|376aa|up_9|CP026107.1_2240665_2241793_+	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|242aa|up_8|CP026107.1_2241813_2242539_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|132aa|up_7|CP026107.1_2242540_2242936_-	pfam09345, DUF1987, Domain of unknown function (DUF1987)	NA|188aa|up_6|CP026107.1_2242954_2243518_-	NA	NA|414aa|up_5|CP026107.1_2243520_2244762_-	cd04598, CBS_pair_GGDEF_EAL, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the GGDEF (DiGuanylate-Cyclase (DGC)) domain	NA|807aa|up_4|CP026107.1_2245660_2248081_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|351aa|up_3|CP026107.1_2248173_2249226_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|153aa|up_2|CP026107.1_2249236_2249695_-	cd00466, DHQase_II, Dehydroquinase (DHQase), type II	NA|456aa|up_1|CP026107.1_2249711_2251079_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|261aa|up_0|CP026107.1_2251298_2252081_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|277aa|down_0|CP026107.1_2253074_2253905_-	cd19140, AKR_AKR3F3, Sinorhizobium meliloti isatin reductase and similar proteins	NA|280aa|down_1|CP026107.1_2253934_2254774_-	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	NA|299aa|down_2|CP026107.1_2254927_2255824_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|139aa|down_3|CP026107.1_2255833_2256250_-	cd02234, cupin_BLR7677-like, Bradyrhizobium japonicum BLR7677 and related proteins, cupin domain	NA|252aa|down_4|CP026107.1_2256283_2257039_-	COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|153aa|down_5|CP026107.1_2257737_2258196_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|220aa|down_6|CP026107.1_2258218_2258878_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|146aa|down_7|CP026107.1_2258874_2259312_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|481aa|down_8|CP026107.1_2259402_2260845_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|172aa|down_9|CP026107.1_2261165_2261681_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily
GCA_002902965.1_ASM290296v1	CP026108	Paraburkholderia hospita strain DSM 17164 chromosome 4, complete sequence	1	206743-206833	1	CRISPRCasFinder	no		WYL	Orphan	CGGCGGACGGCGACACGTGTCGCAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,c2c9_V-U4,cas14j,WYL	NA|157aa|up_9|CP026108.1_193328_193799_-,NA|64aa|up_8|CP026108.1_194353_194545_-,NA|72aa|up_5|CP026108.1_200366_200582_-,NA|138aa|up_4|CP026108.1_200666_201080_-,NA|125aa|up_1|CP026108.1_202071_202446_+,NA|91aa|down_0|CP026108.1_207268_207541_+,NA|1055aa|down_2|CP026108.1_212177_215342_+,NA|334aa|down_5|CP026108.1_223064_224066_-,NA|218aa|down_6|CP026108.1_224620_225274_-,NA|158aa|down_7|CP026108.1_225641_226115_-,NA|289aa|down_8|CP026108.1_226767_227634_-	NA|157aa|up_9|CP026108.1_193328_193799_-	NA	NA|64aa|up_8|CP026108.1_194353_194545_-	NA	NA|265aa|up_7|CP026108.1_195600_196395_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|783aa|up_6|CP026108.1_197694_200043_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|72aa|up_5|CP026108.1_200366_200582_-	NA	NA|138aa|up_4|CP026108.1_200666_201080_-	NA	NA|103aa|up_3|CP026108.1_201347_201656_-	pfam11154, DUF2934, Protein of unknown function (DUF2934)	NA|89aa|up_2|CP026108.1_201750_202017_+	pfam05532, CsbD, CsbD-like	NA|125aa|up_1|CP026108.1_202071_202446_+	NA	NA|239aa|up_0|CP026108.1_205298_206015_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|91aa|down_0|CP026108.1_207268_207541_+	NA	NA|899aa|down_1|CP026108.1_208049_210746_+	pfam01833, TIG, IPT/TIG domain	NA|1055aa|down_2|CP026108.1_212177_215342_+	NA	NA|1818aa|down_3|CP026108.1_215316_220770_+	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	NA|657aa|down_4|CP026108.1_220785_222756_+	pfam09471, Peptidase_M64, IgA Peptidase M64	NA|334aa|down_5|CP026108.1_223064_224066_-	NA	NA|218aa|down_6|CP026108.1_224620_225274_-	NA	NA|158aa|down_7|CP026108.1_225641_226115_-	NA	NA|289aa|down_8|CP026108.1_226767_227634_-	NA	NA|256aa|down_9|CP026108.1_228130_228898_-	pfam01695, IstB_IS21, IstB-like ATP binding protein
