The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026124	Achromobacter sp. AONIH1 chromosome, complete genome	6648943	290445	346375	6648943	tail,tRNA	Burkholderia_phage(15.79%)	51	NA	NA
AUT44718.1|290445_291315_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AUT44719.1|291314_292256_+	prolyl aminopeptidase	NA	NA	NA	NA	NA
AUT44720.1|292266_292467_+	thiamine biosynthesis protein ThiS	NA	NA	NA	NA	NA
AUT44721.1|292467_293844_+	hypothetical protein	NA	NA	NA	NA	NA
AUT44722.1|294124_294571_+	peptidoglycan-binding protein LysM	NA	G3MBQ1	Bacillus_virus	53.6	1.2e-06
AUT44723.1|294709_296116_-	signal recognition particle protein	NA	NA	NA	NA	NA
AUT49923.1|296327_297077_+	hypothetical protein	NA	NA	NA	NA	NA
AUT44724.1|297073_297340_+	hypothetical protein	NA	NA	NA	NA	NA
AUT44725.1|297524_298103_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	31.8	2.3e-07
AUT44726.1|298132_298753_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUT44727.1|298703_299546_-	transcriptional regulator	NA	NA	NA	NA	NA
AUT44728.1|299835_300840_+	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA	NA
AUT44729.1|300850_301504_+	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	NA	NA	NA	NA	NA
AUT44730.1|301500_302649_+	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	37.2	1.5e-58
AUT44731.1|302681_304076_+	MFS transporter	NA	NA	NA	NA	NA
AUT44732.1|304245_305442_-	MFS transporter	NA	NA	NA	NA	NA
AUT44733.1|308818_309109_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
AUT44734.1|309118_310162_-	subtype I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
AUT44735.1|310146_310803_-	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
AUT44736.1|310830_311712_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
AUT44737.1|311708_313526_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
AUT44738.1|313522_314197_-	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
AUT44739.1|314246_316502_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
AUT44740.1|316681_318580_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.0	2.0e-116
AUT44741.1|318768_319149_-	hypothetical protein	NA	NA	NA	NA	NA
AUT44742.1|319163_320573_-	hypothetical protein	NA	NA	NA	NA	NA
AUT44743.1|320767_322159_+	xanthine permease XanP	NA	H9YQ34	environmental_Halophage	50.0	8.3e-27
AUT44744.1|322918_323218_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	59.1	1.4e-19
AUT44745.1|323207_323456_-	plasmid stabilization protein	NA	NA	NA	NA	NA
AUT44746.1|324078_324360_+	hypothetical protein	NA	A0A0P0ZE17	Stx2-converting_phage	29.0	5.0e-08
AUT44747.1|324347_324797_+	transcriptional regulator	NA	NA	NA	NA	NA
AUT44748.1|324943_325960_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	39.6	2.0e-67
AUT44749.1|326141_326423_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUT44750.1|326490_327135_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUT44751.1|327357_329136_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.9	9.5e-36
AUT44752.1|329129_330893_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.6	7.2e-28
AUT44753.1|330892_331834_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	35.5	7.7e-53
AUT44754.1|331830_332781_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AUT44755.1|332777_333548_+	siderophore ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.4	2.9e-13
AUT44756.1|333544_334522_+	ferric anguibactin-binding protein	NA	NA	NA	NA	NA
AUT44757.1|334614_336852_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUT44758.1|336900_337509_-|tail	phage tail protein	tail	A4JX15	Burkholderia_virus	49.3	2.1e-43
AUT44759.1|337574_337799_-	hypothetical protein	NA	NA	NA	NA	NA
AUT44760.1|337782_338151_-	hypothetical protein	NA	NA	NA	NA	NA
AUT44761.1|341734_342340_-|tail	phage tail protein	tail	C7BGD3	Burkholderia_phage	56.0	1.4e-50
AUT44762.1|342336_343116_-	hydrolase Nlp/P60	NA	Q3HQU3	Burkholderia_phage	49.0	3.0e-66
AUT44763.1|343117_343846_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	57.4	2.4e-70
AUT44764.1|343910_344255_-|tail	phage tail protein	tail	NA	NA	NA	NA
AUT49924.1|344251_345511_-|tail	phage tail tape measure protein	tail	Q9MCS3	Enterobacteria_phage	24.0	1.8e-09
AUT44765.1|345608_345899_-|tail	phage tail protein	tail	A0A1B5FP87	Escherichia_phage	42.7	1.2e-12
AUT44766.1|345898_346375_-|tail	phage tail protein	tail	C7BGC7	Burkholderia_phage	42.8	8.8e-21
>prophage 2
CP026124	Achromobacter sp. AONIH1 chromosome, complete genome	6648943	3046615	3089385	6648943	head,portal,capsid,integrase,terminase,plate,tail	Salmonella_phage(15.0%)	60	3034843:3034861	3059189:3059207
3034843:3034861	attL	CTGGCTCACCGCATAGTTG	NA	NA	NA	NA
AUT46968.1|3046615_3047878_-|integrase	integrase	integrase	I6PDJ1	Cronobacter_phage	38.7	1.0e-63
AUT46969.1|3047835_3048069_-	excisionase	NA	NA	NA	NA	NA
AUT46970.1|3048338_3048569_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46971.1|3048561_3048816_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46972.1|3048812_3049094_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46973.1|3049083_3049770_-	hypothetical protein	NA	NA	NA	NA	NA
AUT50096.1|3049771_3050005_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46974.1|3050342_3050621_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46975.1|3051201_3051456_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46976.1|3051452_3052283_-	hypothetical protein	NA	Q8W6P2	Burkholderia_virus	51.9	2.3e-61
AUT46977.1|3052334_3052694_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46978.1|3053228_3054323_-	reverse transcriptase	NA	A0A0N7AE80	Bacillus_phage	35.2	8.1e-46
AUT46979.1|3054582_3054969_-	four helix bundle protein	NA	NA	NA	NA	NA
AUT46980.1|3054997_3055411_-	hypothetical protein	NA	NA	NA	NA	NA
AUT46981.1|3055453_3056428_-	hypothetical protein	NA	A0A0A0YR68	Pseudomonas_phage	42.6	3.1e-20
AUT46982.1|3057655_3058390_-	LexA family transcriptional repressor	NA	A0A0R6PHL1	Moraxella_phage	25.9	5.9e-08
AUT46983.1|3058380_3058626_+	transcriptional regulator	NA	NA	NA	NA	NA
AUT46984.1|3058895_3059273_+	hypothetical protein	NA	NA	NA	NA	NA
3059189:3059207	attR	CAACTATGCGGTGAGCCAG	NA	NA	NA	NA
AUT46985.1|3059269_3059449_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46986.1|3059533_3059758_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46987.1|3059774_3060077_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46988.1|3060070_3060568_+	DUF1364 domain-containing protein	NA	NA	NA	NA	NA
AUT46989.1|3060564_3061755_+	hypothetical protein	NA	K7PGT1	Enterobacteria_phage	41.1	2.2e-12
AUT46990.1|3061685_3063146_+	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	38.9	8.0e-73
AUT46991.1|3063145_3063337_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46992.1|3063342_3063753_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46993.1|3063752_3064121_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46994.1|3064104_3064353_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46995.1|3064588_3064957_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46996.1|3064956_3065199_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46997.1|3065622_3065871_+	hypothetical protein	NA	NA	NA	NA	NA
AUT46998.1|3065787_3066051_-	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
AUT46999.1|3066238_3066484_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47000.1|3066585_3067332_+	hypothetical protein	NA	A0A291AUL1	Sinorhizobium_phage	35.9	3.5e-24
AUT50097.1|3067713_3068337_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47001.1|3068278_3070429_+|terminase	terminase	terminase	A0A2K9V3X4	Faecalibacterium_phage	35.4	5.3e-97
AUT47002.1|3070454_3070703_+|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
AUT47003.1|3070699_3072370_+|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	34.9	6.3e-90
AUT47004.1|3072369_3073248_+	serine peptidase	NA	E4WL22	Enterobacteria_phage	41.0	7.2e-53
AUT47005.1|3073290_3073929_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47006.1|3073969_3074644_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47007.1|3074729_3075785_+|capsid	capsid protein	capsid	V5Q8G6	Xylella_phage	32.6	1.5e-44
AUT47008.1|3075784_3076096_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47009.1|3076107_3076431_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47010.1|3076427_3076982_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47011.1|3076991_3077204_+	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
AUT47012.1|3077203_3078697_+|tail	phage tail protein	tail	B5TK67	Pseudomonas_phage	41.3	1.4e-93
AUT47013.1|3078759_3079128_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUT47014.1|3079157_3079442_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AUT47015.1|3079547_3081512_+	hypothetical protein	NA	A0A2D2W521	Ralstonia_phage	44.0	1.7e-14
AUT47016.1|3081521_3082964_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47017.1|3082993_3084088_+	Mu P family protein	NA	Q8HAC0	Salmonella_phage	30.5	3.9e-32
AUT47018.1|3084084_3084690_+|plate	baseplate assembly protein	plate	A0A077KAY0	Edwardsiella_phage	32.3	2.0e-06
AUT47019.1|3084692_3085160_+	hypothetical protein	NA	A0A2P9JZK5	Alteromonadaceae_phage	31.7	2.0e-17
AUT47020.1|3085159_3086308_+|plate	phage baseplate protein	plate	A0A192Y6E4	Salmonella_phage	32.8	7.3e-29
AUT47021.1|3086319_3086913_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUT47022.1|3087778_3088264_+|tail	phage tail protein	tail	U5P083	Shigella_phage	37.3	6.0e-17
AUT47023.1|3088305_3088617_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47024.1|3088618_3088897_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47025.1|3088893_3089385_+	hypothetical protein	NA	I6NSS1	Burkholderia_phage	59.3	3.2e-42
>prophage 3
CP026124	Achromobacter sp. AONIH1 chromosome, complete genome	6648943	3308662	3326056	6648943	integrase,tail	Burkholderia_phage(37.5%)	22	3312837:3312852	3325775:3325790
AUT47214.1|3308662_3309607_+	hypothetical protein	NA	A0A1W6JNY0	Morganella_phage	33.9	6.9e-09
AUT47215.1|3309593_3310352_+	DNA replication protein DnaC	NA	A0A059WFK9	Vibrio_phage	47.4	5.4e-57
AUT47216.1|3310397_3310814_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47217.1|3310810_3311068_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47218.1|3311787_3312381_+	hypothetical protein	NA	A9YX29	Burkholderia_phage	48.6	2.4e-44
AUT47219.1|3312394_3313867_+	hypothetical protein	NA	A0A0P0I492	Acinetobacter_phage	47.3	3.3e-111
3312837:3312852	attL	GCGCCGCGCTGGCCGG	NA	NA	NA	NA
AUT47220.1|3313882_3314323_+	DUF3277 domain-containing protein	NA	A0A0P0IKY2	Acinetobacter_phage	55.5	4.7e-37
AUT47221.1|3314333_3314783_+	hypothetical protein	NA	A0A0N7IRF3	Acinetobacter_phage	35.8	1.5e-17
AUT50113.1|3314779_3314968_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47222.1|3315026_3316760_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUT47223.1|3316756_3317356_+	hypothetical protein	NA	NA	NA	NA	NA
AUT47224.1|3317365_3317665_+	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	41.1	1.0e-11
AUT50114.1|3317684_3318713_+	hypothetical protein	NA	A9YX04	Burkholderia_phage	53.0	1.8e-79
AUT47225.1|3318750_3319494_+	hypothetical protein	NA	A9YX06	Burkholderia_phage	63.5	1.5e-83
AUT47226.1|3319502_3319856_+	hypothetical protein	NA	A9YX11	Burkholderia_phage	62.4	3.9e-34
AUT47227.1|3319852_3321037_+	hypothetical protein	NA	A9YX12	Burkholderia_phage	64.1	9.5e-133
AUT47228.1|3321042_3321708_+	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	59.3	4.7e-73
AUT47229.1|3321737_3322706_+	hypothetical protein	NA	A0A0A8J8U5	Ralstonia_phage	38.7	1.4e-36
AUT47230.1|3323500_3323857_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUT47231.1|3323915_3324938_-|integrase	integrase	integrase	A0A2H4JE37	uncultured_Caudovirales_phage	31.9	2.4e-23
AUT47232.1|3325116_3325578_+	hypothetical protein	NA	A0A0U5LBV3	unidentified_phage	35.8	2.2e-13
AUT47233.1|3325567_3326056_+	hypothetical protein	NA	A0A2H4JFP9	uncultured_Caudovirales_phage	62.4	1.2e-46
3325775:3325790	attR	CCGGCCAGCGCGGCGC	NA	NA	NA	NA
>prophage 4
CP026124	Achromobacter sp. AONIH1 chromosome, complete genome	6648943	4644935	4653206	6648943	tRNA	uncultured_Mediterranean_phage(28.57%)	9	NA	NA
AUT48296.1|4644935_4645814_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	41.3	6.0e-15
AUT50228.1|4645831_4646470_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.1	2.8e-30
AUT48297.1|4646637_4647396_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.5	1.6e-69
AUT48298.1|4647576_4648221_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUT48299.1|4648244_4649279_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	52.3	3.8e-93
AUT48300.1|4649392_4650688_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.5	1.0e-63
AUT48301.1|4650995_4652018_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AUT48302.1|4652189_4652564_+	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	27.8	2.5e-10
AUT48303.1|4652618_4653206_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	40.9	9.2e-20
>prophage 5
CP026124	Achromobacter sp. AONIH1 chromosome, complete genome	6648943	5825185	5834590	6648943		Acidovorax_phage(14.29%)	12	NA	NA
AUT49237.1|5825185_5826085_+	recombination-associated protein RdgC	NA	A0A218M310	Acidovorax_phage	40.5	1.0e-57
AUT49238.1|5826081_5826393_-	hypothetical protein	NA	NA	NA	NA	NA
AUT49239.1|5826446_5827397_+	hypothetical protein	NA	A0A0U4JP11	Pseudomonas_phage	42.2	5.2e-41
AUT49240.1|5827393_5827600_+	hypothetical protein	NA	NA	NA	NA	NA
AUT49241.1|5827596_5827962_+	hypothetical protein	NA	H2BDF1	Pseudomonas_virus	47.1	3.8e-08
AUT49242.1|5827961_5828492_+	hypothetical protein	NA	A0A248SL53	Klebsiella_phage	40.9	2.3e-17
AUT49243.1|5828503_5828761_+	hypothetical protein	NA	NA	NA	NA	NA
AUT49244.1|5828882_5829125_+	hypothetical protein	NA	NA	NA	NA	NA
AUT49245.1|5829446_5830031_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	57.6	2.5e-17
AUT49246.1|5830213_5830462_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AUT49247.1|5830458_5831748_-	DUF4102 domain-containing protein	NA	C7BGE7	Burkholderia_phage	55.5	9.4e-134
AUT50322.1|5831989_5834590_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	20.8	2.7e-23
>prophage 6
CP026124	Achromobacter sp. AONIH1 chromosome, complete genome	6648943	5941211	5947964	6648943		Cedratvirus(16.67%)	7	NA	NA
AUT49330.1|5941211_5941991_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	27.9	1.6e-11
AUT49331.1|5941987_5942698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.9	4.1e-06
AUT49332.1|5942818_5943196_+	transcriptional regulator	NA	NA	NA	NA	NA
AUT49333.1|5943216_5943939_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	66.1	2.0e-85
AUT50332.1|5944247_5946527_+	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	65.1	1.1e-297
AUT49334.1|5946543_5947677_+	ribonucleotide-diphosphate reductase subunit beta	NA	W6AT53	Erwinia_phage	70.0	2.2e-155
AUT49335.1|5947673_5947964_+	[Fe-S]-binding protein	NA	G9IAA2	Pseudomonas_phage	50.8	4.1e-13
