assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002900325.1_ASM290032v1	CP025745	Salmonella enterica strain MFDS1004024 chromosome, complete genome	2	984885-986072	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|164aa|up_9|CP025745.1_973432_973924_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|162aa|up_8|CP025745.1_973965_974451_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|167aa|up_7|CP025745.1_974450_974951_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP025745.1_974976_975750_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|882aa|up_5|CP025745.1_975762_978408_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP025745.1_978541_979129_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP025745.1_979734_980535_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP025745.1_980762_982400_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP025745.1_982482_983781_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP025745.1_983916_984588_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|116aa|down_0|CP025745.1_986169_986517_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|143aa|down_1|CP025745.1_986539_986968_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_2|CP025745.1_987055_987418_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_3|CP025745.1_987852_989652_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP025745.1_989651_991364_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP025745.1_991465_992200_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP025745.1_992287_993241_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_7|CP025745.1_993685_996349_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_8|CP025745.1_996360_997917_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_9|CP025745.1_997913_998474_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCA_002900325.1_ASM290032v1	CP025745	Salmonella enterica strain MFDS1004024 chromosome, complete genome	3	1002242-1003920	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	27,27	27	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|CP025745.1_991465_992200_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|CP025745.1_992287_993241_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|CP025745.1_993685_996349_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP025745.1_996360_997917_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP025745.1_997913_998474_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP025745.1_998487_999546_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP025745.1_999556_1000303_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP025745.1_1000284_1000935_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP025745.1_1000931_1001852_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP025745.1_1001851_1002145_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP025745.1_1003934_1004981_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP025745.1_1005231_1006140_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP025745.1_1006149_1007589_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP025745.1_1007575_1008181_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP025745.1_1008231_1008555_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP025745.1_1008745_1009057_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP025745.1_1009075_1009786_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP025745.1_1009785_1010265_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP025745.1_1010261_1011311_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP025745.1_1011291_1012053_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_002900325.1_ASM290032v1	CP025745	Salmonella enterica strain MFDS1004024 chromosome, complete genome	4	2947317-2947445	4	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|153aa|down_0|CP025745.1_2947478_2947937_-	NA|1321aa|up_9|CP025745.1_2932933_2936896_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_8|CP025745.1_2937030_2937525_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|323aa|up_7|CP025745.1_2938071_2939040_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_6|CP025745.1_2939153_2940920_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_5|CP025745.1_2940920_2942642_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_4|CP025745.1_2942686_2943391_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_3|CP025745.1_2943702_2943921_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|304aa|up_2|CP025745.1_2944011_2944923_-	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|287aa|up_1|CP025745.1_2945031_2945892_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|226aa|up_0|CP025745.1_2945911_2946589_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|153aa|down_0|CP025745.1_2947478_2947937_-	NA	NA|759aa|down_1|CP025745.1_2948142_2950419_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_2|CP025745.1_2950449_2950770_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|74aa|down_3|CP025745.1_2951093_2951315_+	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|649aa|down_4|CP025745.1_2951444_2953391_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|373aa|down_5|CP025745.1_2953387_2954506_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_6|CP025745.1_2954651_2955602_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_7|CP025745.1_2955598_2957257_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|down_8|CP025745.1_2957458_2958358_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|CP025745.1_2958501_2960154_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
