The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	120946	157897	4175806	terminase,capsid,holin,tail,portal	uncultured_Caudovirales_phage(33.33%)	50	NA	NA
AUS10667.1|120946_121921_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	69.6	7.7e-64
AUS10668.1|121965_122388_-|holin	holin	holin	D6R405	Bacillus_phage	72.9	2.0e-48
AUS10669.1|122433_123327_-|portal	phage portal protein	portal	NA	NA	NA	NA
AUS10670.1|123413_123578_-	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	67.9	2.7e-14
AUS10671.1|123574_123910_-|portal	phage portal protein	portal	NA	NA	NA	NA
AUS10672.1|123919_125020_-	hypothetical protein	NA	M4ZRP1	Bacillus_phage	56.1	1.7e-19
AUS10673.1|125022_125295_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10674.1|125291_125870_-	DUF2313 domain-containing protein	NA	A0A2H4J717	uncultured_Caudovirales_phage	33.1	4.3e-14
AUS10675.1|125853_126900_-|portal	phage portal protein	portal	S6AVU3	Thermus_phage	43.5	8.3e-72
AUS10676.1|126892_127318_-	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	36.4	1.5e-11
AUS10677.1|127330_127594_-	DUF2577 domain-containing protein	NA	NA	NA	NA	NA
AUS10678.1|127590_128571_-|portal	phage portal protein	portal	H7BV96	unidentified_phage	32.6	1.9e-41
AUS10679.1|128583_129243_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A090DBR9	Clostridium_phage	34.7	2.1e-25
AUS10680.1|129235_133993_-	hypothetical protein	NA	A0A1L2JY60	Aeribacillus_phage	47.2	1.3e-44
AUS10681.1|133995_134133_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10682.1|134174_134624_-|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	41.1	2.7e-11
AUS10683.1|135222_135666_-|portal	phage portal protein	portal	A0A0K2CNG3	Brevibacillus_phage	45.4	3.2e-25
AUS10684.1|135668_137069_-|tail	phage tail sheath protein	tail	S5MNC1	Brevibacillus_phage	38.9	4.1e-74
AUS10685.1|137069_137261_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10686.1|137257_137695_-|portal	phage portal protein	portal	NA	NA	NA	NA
AUS10687.1|137707_138211_-|portal	phage portal protein	portal	A0A249XXA4	Clostridium_phage	45.7	7.1e-37
AUS10688.1|138207_138570_-	DUF3599 domain-containing protein	NA	NA	NA	NA	NA
AUS10689.1|138566_138962_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10690.1|138966_139278_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10691.1|139288_140224_-|capsid	phage major capsid protein	capsid	A0A1B1P7E3	Bacillus_phage	65.0	8.6e-105
AUS10692.1|140242_141217_-|portal	phage portal protein	portal	A0A1B1P7E4	Bacillus_phage	57.5	2.8e-58
AUS10693.1|141232_142636_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10694.1|142710_143610_-	hypothetical protein	NA	A0A1B1P7D7	Bacillus_phage	39.1	6.9e-51
AUS10695.1|143606_145139_-|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	51.3	2.1e-148
AUS10696.1|145142_146438_-|terminase	PBSX family phage terminase large subunit	terminase	A0A2P1JTW5	Anoxybacillus_phage	63.6	6.7e-156
AUS10697.1|146430_147225_-	hypothetical protein	NA	A0A2H4J4R0	uncultured_Caudovirales_phage	57.7	3.0e-66
AUS10698.1|147285_148149_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10699.1|148417_149014_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10700.1|149016_149208_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10701.1|149349_149805_-	hypothetical protein	NA	A0A2H4J4R7	uncultured_Caudovirales_phage	73.5	3.5e-59
AUS10702.1|149899_150604_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10703.1|150680_151229_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
AUS10704.1|151334_151541_-	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	73.1	1.4e-20
AUS10705.1|151625_152054_-	RusA family crossover junction endodeoxyribonuclease	NA	S6B1L9	Thermus_phage	65.7	2.8e-42
AUS10706.1|152148_152298_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10707.1|152288_153230_-	ATP-binding protein	NA	A6XMI1	Bacillus_virus	51.7	4.0e-57
AUS10708.1|153111_153813_-	DnaD domain protein	NA	A0A2H4J6G9	uncultured_Caudovirales_phage	32.2	1.5e-05
AUS10709.1|153865_154720_-	recombinase RecT	NA	A0A2H4JCY8	uncultured_Caudovirales_phage	74.8	4.6e-113
AUS10710.1|154722_155682_-	hypothetical protein	NA	A0A2H4JA52	uncultured_Caudovirales_phage	73.9	9.7e-136
AUS10711.1|155787_155982_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10712.1|156111_156366_-	hypothetical protein	NA	A0A2H4J4M9	uncultured_Caudovirales_phage	42.2	9.1e-09
AUS10713.1|156362_156932_-	XRE family transcriptional regulator	NA	A0A2H4J884	uncultured_Caudovirales_phage	61.0	1.5e-64
AUS10714.1|157005_157146_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10715.1|157148_157388_-	transcriptional regulator	NA	NA	NA	NA	NA
AUS10716.1|157543_157897_+	transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	48.6	8.0e-11
>prophage 2
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	296911	392137	4175806	terminase,head,portal,protease,capsid,coat,holin,tail,tRNA	Bacillus_phage(63.83%)	108	NA	NA
AUS10845.1|296911_298057_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.0	5.8e-87
AUS10846.1|298083_299112_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUS10847.1|299141_299342_-	DUF2905 domain-containing protein	NA	NA	NA	NA	NA
AUS10848.1|299334_300339_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	29.8	5.2e-07
AUS10849.1|300349_300955_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AUS10850.1|301093_301606_-	signaling peptide protein	NA	NA	NA	NA	NA
AUS10851.1|301653_302961_-	MFS transporter	NA	NA	NA	NA	NA
AUS10852.1|303031_304057_-	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
AUS10853.1|304293_304941_+	serine/threonine protein kinase	NA	A0A2R3ZQF2	Marseillevirus	26.3	5.4e-05
AUS14492.1|305504_305636_+	hypothetical protein	NA	NA	NA	NA	NA
AUS10854.1|305918_307373_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
AUS10855.1|307414_308137_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AUS10856.1|308243_308843_-	sporulation protein	NA	NA	NA	NA	NA
AUS10857.1|308990_310148_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AUS10858.1|310263_311370_-	quinolinate synthase NadA	NA	NA	NA	NA	NA
AUS10859.1|311356_312226_-	nicotinate-nucleotide diphosphorylase (carboxylating)	NA	NA	NA	NA	NA
AUS10860.1|312179_313772_-	L-aspartate oxidase	NA	NA	NA	NA	NA
AUS10861.1|313874_315062_+	cysteine desulfurase	NA	A0A141ZJV0	Faustovirus	27.8	2.3e-33
AUS10862.1|315021_315564_+	transcription repressor NadR	NA	NA	NA	NA	NA
AUS10863.1|315587_316445_-	prephenate dehydratase	NA	NA	NA	NA	NA
AUS10864.1|316461_316905_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AUS10865.1|316962_318249_-	GTPase ObgE	NA	NA	NA	NA	NA
AUS10866.1|318281_318860_-	sporulation protein	NA	NA	NA	NA	NA
AUS10867.1|319182_319467_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUS10868.1|319479_319818_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AUS10869.1|319820_320129_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUS10870.1|320275_321142_-	stage IV sporulation protein FB	NA	NA	NA	NA	NA
AUS10871.1|321134_321929_-	M23 family peptidase	NA	NA	NA	NA	NA
AUS10872.1|322077_322884_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUS10873.1|322885_323566_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUS10874.1|323618_324137_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AUS10875.1|324133_325006_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AUS10876.1|325036_326050_-	rod shape-determining protein	NA	NA	NA	NA	NA
AUS14493.1|326726_326981_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10877.1|327082_327313_-	DNA-binding protein	NA	NA	NA	NA	NA
AUS10878.1|327290_327500_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10879.1|328249_328648_+	hypothetical protein	NA	NA	NA	NA	NA
AUS10880.1|328683_328872_+	hypothetical protein	NA	A0A2H4J4T3	uncultured_Caudovirales_phage	50.0	7.2e-11
AUS10881.1|329030_330803_+	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	55.8	1.2e-123
AUS10882.1|330815_331277_+	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
AUS10883.1|331327_332296_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A218KC88	Bacillus_phage	68.5	3.1e-65
AUS10884.1|332350_332614_-|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	66.7	2.7e-24
AUS10885.1|332628_332841_-	hypothetical protein	NA	A0A290GDY2	Caldibacillus_phage	59.4	1.9e-15
AUS10886.1|332892_333066_-	XkdX family protein	NA	Q9ZXD9	Bacillus_phage	73.7	5.6e-18
AUS10887.1|333065_333434_-	hypothetical protein	NA	Q9ZXE0	Bacillus_phage	48.4	2.7e-17
AUS10888.1|333447_335031_-	hypothetical protein	NA	M4ZRP1	Bacillus_phage	51.1	1.3e-65
AUS10889.1|335213_335522_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10890.1|335537_337436_-	teichoic acid biosynthesis protein	NA	A0A185AMX0	Staphylococcus_phage	32.1	9.5e-42
AUS10891.1|337487_339191_-	alkaline phosphatase	NA	D6R400	Bacillus_phage	55.3	8.2e-178
AUS10892.1|339205_340045_-|tail	phage tail family protein	tail	D6R3Z9	Bacillus_phage	59.0	8.9e-93
AUS10893.1|340038_344526_-|tail	phage tail tape measure protein	tail	A6M961	Geobacillus_virus	41.5	2.0e-66
AUS10894.1|344725_345103_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10895.1|345167_345779_-|tail	phage tail protein	tail	J7KKC8	Streptococcus_phage	35.1	3.6e-11
AUS10896.1|345793_346186_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10897.1|346182_346581_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10898.1|346580_346895_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JCB1	uncultured_Caudovirales_phage	36.3	2.2e-12
AUS10899.1|346884_347187_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	46.3	2.8e-12
AUS10900.1|347204_347666_-	collagen-like protein	NA	D6R3Z0	Bacillus_phage	58.9	1.0e-10
AUS10901.1|347692_348979_-|capsid	phage major capsid protein	capsid	A0A288WG01	Bacillus_phage	45.2	2.7e-80
AUS10902.1|349018_349756_-|protease	Clp protease ClpP	protease	A0A2I7SCY8	Paenibacillus_phage	56.4	6.9e-57
AUS10903.1|349703_351011_-|portal	phage portal protein	portal	D6R3Y6	Bacillus_phage	46.7	9.3e-105
AUS10904.1|351011_351203_-	DUF1056 domain-containing protein	NA	NA	NA	NA	NA
AUS10905.1|351213_352923_-|terminase	terminase large subunit	terminase	A0A0S2GLF0	Bacillus_phage	62.5	6.0e-205
AUS10906.1|352919_353435_-|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	43.4	2.2e-33
AUS10907.1|353663_354029_-	HNH endonuclease	NA	A0A1U7Q1S7	Geobacillus_virus	51.7	3.9e-29
AUS10908.1|354389_354704_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10909.1|354951_355230_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10910.1|355671_356085_-	ArpU family transcriptional regulator	NA	D6R428	Bacillus_phage	97.7	5.6e-64
AUS10911.1|356170_356521_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10912.1|356508_356745_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10913.1|356737_356956_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10914.1|356968_357370_-	hypothetical protein	NA	M4ZR14	Bacillus_phage	97.0	3.0e-62
AUS10915.1|357366_357549_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10916.1|357561_357747_-	hypothetical protein	NA	NA	NA	NA	NA
AUS10917.1|357743_358127_-	hypothetical protein	NA	H0USU9	Bacillus_phage	59.6	4.9e-14
AUS10918.1|358092_358284_-	hypothetical protein	NA	D6R426	Bacillus_phage	80.4	8.1e-18
AUS10919.1|358284_358800_-	hypothetical protein	NA	D6R425	Bacillus_phage	95.9	6.4e-94
AUS10920.1|358833_359373_-	nuclease	NA	Q9ZXC2	Bacillus_phage	96.1	1.8e-94
AUS10921.1|359369_359807_-	hypothetical protein	NA	Q9ZXC3	Bacillus_phage	91.7	4.8e-74
AUS10922.1|360008_362426_-	DNA primase	NA	D6R422	Bacillus_phage	89.0	0.0e+00
AUS10923.1|362486_362924_-	hypothetical protein	NA	Q9ZXC5	Bacillus_phage	96.6	3.8e-79
AUS10924.1|362947_363145_-	hypothetical protein	NA	Q9ZXC6	Bacillus_phage	87.5	1.1e-17
AUS10925.1|363134_364073_-	hypothetical protein	NA	Q9ZXC7	Bacillus_phage	93.2	2.8e-164
AUS10926.1|364076_364631_-	hypothetical protein	NA	Q9ZXC8	Bacillus_phage	96.2	6.9e-94
AUS10927.1|364824_365100_-	hypothetical protein	NA	Q9ZXC9	Bacillus_phage	48.3	1.7e-21
AUS10928.1|365320_365593_-	XRE family transcriptional regulator	NA	D6R414	Bacillus_phage	94.4	1.4e-39
AUS10929.1|365872_366307_+	XRE family transcriptional regulator	NA	Q786F1	Bacillus_phage	91.0	2.6e-64
AUS10930.1|366320_366767_+	ImmA/IrrE family metallo-endopeptidase	NA	Q9T201	Bacillus_phage	88.5	3.5e-72
AUS10931.1|366806_368234_+	recombinase family protein	NA	Q9T200	Bacillus_phage	84.8	3.8e-229
AUS10932.1|368237_368654_-	DNA repair protein RadC	NA	NA	NA	NA	NA
AUS10933.1|368690_369260_-	septum formation protein Maf	NA	NA	NA	NA	NA
AUS10934.1|369411_370410_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AUS10935.1|370543_371290_-	prepilin peptidase	NA	NA	NA	NA	NA
AUS10936.1|371429_372722_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AUS10937.1|372781_375424_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.8	1.7e-161
AUS10938.1|375871_376063_+	hypothetical protein	NA	NA	NA	NA	NA
AUS10939.1|376081_377107_-|coat	spore coat protein YsxE	coat	NA	NA	NA	NA
AUS10940.1|377139_378846_-	stage VI sporulation protein D	NA	NA	NA	NA	NA
AUS10941.1|378975_380268_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AUS10942.1|380297_381272_-	porphobilinogen synthase	NA	NA	NA	NA	NA
AUS10943.1|381268_382057_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AUS10944.1|382046_382991_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
AUS10945.1|383023_383854_-	cytochrome C assembly protein	NA	NA	NA	NA	NA
AUS10946.1|383861_385229_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AUS10947.1|385976_386564_-	GTP-binding protein	NA	NA	NA	NA	NA
AUS10948.1|386560_388885_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.5	2.6e-182
AUS10949.1|389065_390724_-|protease	ATP-dependent protease LonB	protease	A0A1V0SHJ7	Hokovirus	33.7	8.1e-05
AUS10950.1|390874_392137_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	64.9	1.3e-148
>prophage 3
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	1382569	1486215	4175806	protease,lysis,coat,bacteriocin,holin,tRNA	Bacillus_phage(21.43%)	107	NA	NA
AUS11853.1|1382569_1384240_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUS11854.1|1384236_1384665_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
AUS11855.1|1384976_1385108_+	subtilosin-A	NA	NA	NA	NA	NA
AUS11856.1|1385064_1385217_+|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	NA	NA	NA	NA
AUS11857.1|1385241_1386588_+	subtilosin maturase AlbA	NA	NA	NA	NA	NA
AUS11858.1|1386600_1386762_+|bacteriocin	bacteriocin biosynthesis protein AlbB	bacteriocin	NA	NA	NA	NA
AUS11859.1|1386758_1387478_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	5.6e-19
AUS11860.1|1387470_1388781_+|bacteriocin	bacteriocin biosynthesis protein AlbD	bacteriocin	NA	NA	NA	NA
AUS14545.1|1388770_1389931_+	insulinase family protein	NA	NA	NA	NA	NA
AUS11861.1|1389935_1391216_+	insulinase family protein	NA	NA	NA	NA	NA
AUS11862.1|1391212_1391914_+|bacteriocin	bacteriocin biosynthesis protein AlbG	bacteriocin	NA	NA	NA	NA
AUS11863.1|1391919_1393296_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11864.1|1393335_1394691_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11865.1|1394687_1394888_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11866.1|1394920_1396066_+	aspartate phosphatase	NA	A0A1P8CWN8	Bacillus_phage	44.8	5.1e-83
AUS11867.1|1396049_1396169_+	phosphatase	NA	NA	NA	NA	NA
AUS11868.1|1396267_1396741_+	hypothetical protein	NA	NA	NA	NA	NA
AUS11869.1|1396772_1397645_-	agmatinase	NA	NA	NA	NA	NA
AUS11870.1|1397705_1398536_-	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
AUS11871.1|1398737_1400813_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AUS11872.1|1401211_1401712_-	histidine kinase	NA	NA	NA	NA	NA
AUS14546.1|1402297_1403236_-	class A beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	45.7	8.8e-57
AUS11873.1|1404343_1404862_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11874.1|1404875_1405535_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AUS11875.1|1405643_1405832_+	2-hydroxymuconate tautomerase	NA	NA	NA	NA	NA
AUS11876.1|1405874_1406294_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUS11877.1|1406413_1408330_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	42.7	9.6e-143
AUS11878.1|1408543_1408732_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11879.1|1409179_1410580_-	MFS transporter	NA	NA	NA	NA	NA
AUS11880.1|1410576_1411047_-	transcriptional regulator	NA	NA	NA	NA	NA
AUS11881.1|1411159_1411660_-	YwgA family protein	NA	NA	NA	NA	NA
AUS11882.1|1411695_1412997_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	28.9	5.5e-25
AUS11883.1|1413158_1413383_-	DUF1450 domain-containing protein	NA	NA	NA	NA	NA
AUS11884.1|1413596_1414376_+	Prespore-specific transcriptional regulator RsfA	NA	NA	NA	NA	NA
AUS11885.1|1414520_1415411_-	EamA family transporter	NA	NA	NA	NA	NA
AUS11886.1|1415579_1416425_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AUS11887.1|1416472_1417372_-	transcriptional regulator CynR	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	42.5	3.6e-07
AUS11888.1|1417517_1418489_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUS14547.1|1418774_1419524_+	heme-dependent peroxidase	NA	NA	NA	NA	NA
AUS11889.1|1419656_1420436_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AUS11890.1|1420451_1421651_-	aspartate aminotransferase	NA	NA	NA	NA	NA
AUS11891.1|1421651_1422836_-	MFS transporter	NA	NA	NA	NA	NA
AUS11892.1|1422832_1424251_-	carboxylate--amine ligase	NA	NA	NA	NA	NA
AUS11893.1|1424268_1425036_-	dihydroanticapsin 7-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.5	1.3e-21
AUS11894.1|1425032_1425740_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AUS11895.1|1425729_1426344_-	bacilysin biosynthesis protein BacA	NA	NA	NA	NA	NA
AUS11896.1|1426495_1427734_-	MFS transporter	NA	NA	NA	NA	NA
AUS11897.1|1427941_1429354_-	amino acid permease	NA	NA	NA	NA	NA
AUS11898.1|1429353_1431054_-	peptidase M20	NA	NA	NA	NA	NA
AUS11899.1|1431127_1432675_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUS11900.1|1432906_1434181_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AUS11901.1|1434356_1434821_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11902.1|1435144_1435600_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS11903.1|1435592_1436444_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.4	2.2e-38
AUS11904.1|1436457_1437405_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.5	1.7e-71
AUS11905.1|1437404_1438145_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	42.3	5.3e-49
AUS11906.1|1438169_1439189_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS11907.1|1439191_1439914_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS11908.1|1439906_1441028_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS11909.1|1441027_1441897_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUS11910.1|1443086_1444511_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS11911.1|1444515_1445286_-	glycosyl transferase	NA	A0A0F7L2F7	uncultured_marine_virus	28.6	3.4e-06
AUS11912.1|1445251_1445458_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11913.1|1445605_1446142_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
AUS11914.1|1446185_1446557_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AUS11915.1|1446618_1447941_-	purine permease	NA	NA	NA	NA	NA
AUS11916.1|1447960_1448278_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11917.1|1448444_1449815_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUS11918.1|1449839_1450517_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	45.7	2.4e-48
AUS11919.1|1450530_1451337_-	glycosyltransferase	NA	NA	NA	NA	NA
AUS11920.1|1451426_1451960_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11921.1|1452007_1452643_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11922.1|1452635_1452974_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUS11923.1|1453117_1453933_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUS11924.1|1454022_1454271_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11925.1|1454364_1455804_-	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	27.8	5.7e-23
AUS11926.1|1455800_1457186_-	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA	NA
AUS11927.1|1457487_1458258_+	transporter	NA	NA	NA	NA	NA
AUS11928.1|1458296_1459127_-	levansucrase	NA	NA	NA	NA	NA
AUS14548.1|1459166_1459469_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11929.1|1459998_1462419_+	peptidase S8	NA	A0A217EQY2	Bacillus_phage	38.2	5.3e-21
AUS11930.1|1462456_1463458_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AUS11931.1|1463631_1464381_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AUS11932.1|1464486_1465668_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
AUS11933.1|1466164_1466428_+	germination protein	NA	NA	NA	NA	NA
AUS11934.1|1466469_1466844_-	quinol oxidase subunit 4	NA	NA	NA	NA	NA
AUS11935.1|1466845_1467460_-	Quinol oxidase subunit 3	NA	NA	NA	NA	NA
AUS11936.1|1467473_1469423_-	cytochrome aa3 quinol oxidase subunit I	NA	NA	NA	NA	NA
AUS14549.1|1469450_1470416_-	quinol oxidase subunit 2	NA	NA	NA	NA	NA
AUS14550.1|1470929_1471175_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AUS11937.1|1471246_1472788_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AUS11938.1|1472791_1473964_-	galactokinase	NA	NA	NA	NA	NA
AUS11939.1|1474046_1474430_-	GtrA family protein	NA	NA	NA	NA	NA
AUS11940.1|1474447_1475119_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUS11941.1|1475473_1475632_+	DNA-binding anti-repressor SinI	NA	NA	NA	NA	NA
AUS11942.1|1476075_1476384_+	DUF485 domain-containing protein	NA	NA	NA	NA	NA
AUS11943.1|1476380_1477922_+	cation acetate symporter	NA	NA	NA	NA	NA
AUS11944.1|1477950_1478553_-	DsbA family protein	NA	NA	NA	NA	NA
AUS11945.1|1478643_1479894_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
AUS11946.1|1479912_1481070_-	Efem/EfeO family lipoprotein	NA	NA	NA	NA	NA
AUS11947.1|1481066_1482512_-	iron transporter	NA	NA	NA	NA	NA
AUS11948.1|1482522_1482702_-	hypothetical protein	NA	NA	NA	NA	NA
AUS11949.1|1482667_1483336_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
AUS11950.1|1483332_1484151_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
AUS11951.1|1484158_1485064_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUS11952.1|1485169_1485556_+|holin	holin-like protein CidA	holin	NA	NA	NA	NA
AUS11953.1|1485537_1486215_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
>prophage 4
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	1935665	2000784	4175806	terminase,integrase,capsid,tRNA,holin,tail,portal	Bacillus_phage(41.86%)	81	1948589:1948636	2001914:2001961
AUS12379.1|1935665_1936409_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUS12380.1|1936570_1937008_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AUS12381.1|1937028_1937421_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AUS12382.1|1937883_1938651_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUS12383.1|1938835_1939279_+	DUF2521 domain-containing protein	NA	NA	NA	NA	NA
AUS12384.1|1939338_1940052_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6W8I1	Bacillus_phage	30.5	4.8e-15
AUS12385.1|1940146_1941205_+	ATP-binding protein	NA	NA	NA	NA	NA
AUS12386.1|1941241_1941799_-	spore gernimation protein GerD	NA	NA	NA	NA	NA
AUS12387.1|1941908_1942505_+	KinB-signaling pathway activation protein	NA	NA	NA	NA	NA
AUS12388.1|1942505_1943270_-	polysaccharide deacetylase PdaB	NA	NA	NA	NA	NA
1948589:1948636	attL	CTTCCATGGTAAGGAAGAGGTCAGCGGTTCGAGCCCGCTTGGAAGCTT	NA	NA	NA	NA
AUS12389.1|1948741_1949926_-|integrase	site-specific integrase	integrase	A0A0K2CZ62	Paenibacillus_phage	40.5	1.5e-74
AUS12390.1|1949912_1950446_-|portal	phage portal protein	portal	A0A2H4JA43	uncultured_Caudovirales_phage	50.6	1.8e-38
AUS12391.1|1950526_1951132_-	hypothetical protein	NA	O64079	Bacillus_phage	75.8	7.2e-60
AUS12392.1|1951363_1951690_-	XRE family transcriptional regulator	NA	O64078	Bacillus_phage	91.6	1.5e-48
AUS12393.1|1951855_1952104_+	XRE family transcriptional regulator	NA	A0A290G4F8	Caldibacillus_phage	45.7	4.4e-08
AUS12394.1|1952119_1952311_+	DNA-binding protein	NA	U5P0W4	Brevibacillus_phage	44.8	2.9e-07
AUS12395.1|1952375_1952909_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12396.1|1952898_1953159_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12397.1|1953741_1953927_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12398.1|1953923_1955897_+	hypothetical protein	NA	A0A1L2K2K3	Aeribacillus_phage	48.3	1.7e-155
AUS12399.1|1955896_1956121_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12400.1|1956113_1956995_+	recombinase RecT	NA	D7RWF9	Brochothrix_phage	61.3	2.0e-87
AUS12401.1|1956991_1957693_+	MBL fold metallo-hydrolase	NA	A0A1L2JY21	Aeribacillus_phage	70.0	3.2e-96
AUS12402.1|1957897_1958662_+	hypothetical protein	NA	U5Q085	Bacillus_phage	31.9	2.0e-11
AUS12403.1|1958675_1958957_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12404.1|1958931_1960230_+	replicative DNA helicase	NA	D2XR44	Bacillus_phage	42.6	1.6e-93
AUS12405.1|1960248_1960443_+	Fur-regulated basic protein FbpA	NA	A0A1L2JY24	Aeribacillus_phage	41.8	4.7e-05
AUS12406.1|1960543_1960999_+	RusA family crossover junction endodeoxyribonuclease	NA	S6B1L9	Thermus_phage	67.6	6.0e-51
AUS12407.1|1960971_1961664_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12408.1|1961663_1961864_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12409.1|1961790_1961973_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12410.1|1962042_1962246_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12411.1|1962286_1962766_+	hypothetical protein	NA	A0A0M3ULE9	Bacillus_phage	38.1	4.0e-21
AUS12412.1|1962783_1963071_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12413.1|1963067_1963340_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12414.1|1963373_1963976_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12415.1|1963972_1964254_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12416.1|1964250_1964649_+	hypothetical protein	NA	M4ZR14	Bacillus_phage	89.4	6.8e-59
AUS12417.1|1964730_1965117_+	ArpU family transcriptional regulator	NA	Q9ZXB9	Bacillus_phage	56.5	4.2e-29
AUS12418.1|1965185_1965938_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12419.1|1966010_1966385_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12420.1|1966694_1967039_+	structural protein	NA	M4ZRM2	Bacillus_phage	57.0	4.8e-29
AUS12421.1|1967106_1967580_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12422.1|1967635_1968913_+	DNA modification methylase	NA	A0A2I4R670	Erysipelothrix_phage	40.2	3.6e-77
AUS12423.1|1969050_1969299_+	hypothetical protein	NA	A8ATN7	Listeria_phage	36.7	2.7e-05
AUS12424.1|1969428_1969959_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12425.1|1970044_1970932_+|terminase	terminase	terminase	A0A1L2JY44	Aeribacillus_phage	70.7	2.4e-16
AUS14567.1|1970931_1972236_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2P1JTW5	Anoxybacillus_phage	63.3	2.7e-157
AUS12426.1|1972240_1973773_+|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	54.4	7.4e-154
AUS12427.1|1973769_1974687_+	hypothetical protein	NA	A0A1B1P7D7	Bacillus_phage	39.9	2.8e-55
AUS12428.1|1974733_1975393_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12429.1|1975444_1976632_+|terminase	terminase	terminase	A0A1B1P7E4	Bacillus_phage	51.7	5.5e-80
AUS12430.1|1976663_1977599_+|capsid	phage major capsid protein	capsid	A0A1B1P7E3	Bacillus_phage	64.0	5.1e-105
AUS12431.1|1977610_1977964_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12432.1|1977969_1978362_+	hypothetical protein	NA	A0A1B1P7D6	Bacillus_phage	37.7	3.8e-14
AUS12433.1|1978358_1978721_+	DUF3599 domain-containing protein	NA	NA	NA	NA	NA
AUS12434.1|1978717_1979218_+|portal	phage portal protein	portal	A0A249XXA4	Clostridium_phage	47.2	3.0e-40
AUS12435.1|1979230_1979668_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS12436.1|1979664_1979856_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12437.1|1979856_1981257_+|tail	phage tail sheath protein	tail	S5MNC1	Brevibacillus_phage	39.3	1.7e-75
AUS12438.1|1981259_1981703_+|portal	phage portal protein	portal	A0A0K2CNG3	Brevibacillus_phage	44.7	7.1e-25
AUS12439.1|1981977_1982064_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AUS12440.1|1982219_1982669_+|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	36.6	2.3e-10
AUS12441.1|1982710_1982848_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12442.1|1982850_1988193_+	hypothetical protein	NA	A0A1L2JY60	Aeribacillus_phage	45.5	7.0e-42
AUS12443.1|1988185_1988845_+|portal	phage portal protein	portal	A0A090DBR9	Clostridium_phage	35.8	6.7e-27
AUS12444.1|1988859_1989840_+|portal	phage portal protein	portal	H7BV96	unidentified_phage	32.3	2.7e-40
AUS12445.1|1989836_1990103_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS12446.1|1990115_1990541_+|portal	phage portal protein	portal	A0A0A8WJV8	Clostridium_phage	35.6	1.1e-11
AUS12447.1|1990533_1991580_+|portal	phage portal protein	portal	S6AVU3	Thermus_phage	43.8	1.8e-71
AUS12448.1|1991563_1992142_+|portal	phage portal protein	portal	A0A2H4J717	uncultured_Caudovirales_phage	33.8	4.3e-14
AUS12449.1|1992138_1992411_+	hypothetical protein	NA	NA	NA	NA	NA
AUS12450.1|1992414_1994172_+|terminase	terminase	terminase	A0A1L2K2Q1	Aeribacillus_phage	28.5	2.0e-14
AUS12451.1|1994181_1994517_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS12452.1|1994513_1994678_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	69.8	1.9e-15
AUS12453.1|1994766_1995660_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS12454.1|1995709_1996132_+|holin	holin	holin	D6R405	Bacillus_phage	83.5	4.8e-55
AUS12455.1|1996174_1997146_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A218KC88	Bacillus_phage	68.5	7.0e-65
AUS12456.1|1997197_1997662_-	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
AUS12457.1|1997680_1999444_-	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	54.3	1.4e-127
AUS12458.1|1999653_2000784_+	aspartate phosphatase	NA	A0A1P8CWN8	Bacillus_phage	39.8	6.4e-70
2001914:2001961	attR	CTTCCATGGTAAGGAAGAGGTCAGCGGTTCGAGCCCGCTTGGAAGCTT	NA	NA	NA	NA
>prophage 5
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	2534727	2543092	4175806		Synechococcus_phage(50.0%)	8	NA	NA
AUS12915.1|2534727_2536023_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.7	5.9e-19
AUS12916.1|2536096_2536822_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	43.7	2.7e-45
AUS12917.1|2536814_2537069_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AUS12918.1|2537065_2537749_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AUS12919.1|2537732_2539961_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.0	1.9e-158
AUS12920.1|2539936_2541367_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	1.2e-52
AUS12921.1|2541467_2542508_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	42.0	2.2e-64
AUS12922.1|2542504_2543092_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	42.1	2.2e-29
>prophage 6
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	3036366	3070477	4175806	coat,tRNA	Planktothrix_phage(20.0%)	39	NA	NA
AUS14619.1|3036366_3037359_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUS13376.1|3038103_3039741_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUS13377.1|3039847_3040783_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUS13378.1|3040786_3041704_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUS13379.1|3041708_3042785_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	2.1e-17
AUS13380.1|3042786_3043704_+	peptide ABC transporter ATP-binding protein	NA	M1HP82	Acanthocystis_turfacea_Chlorella_virus	24.6	1.5e-05
AUS13381.1|3043810_3045028_+	MFS transporter	NA	NA	NA	NA	NA
AUS13382.1|3045191_3045770_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUS13383.1|3045950_3046346_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AUS13384.1|3046600_3047257_-	hypothetical protein	NA	A0A2R2YAT9	Pseudomonas_phage	38.0	4.2e-29
AUS13385.1|3047533_3048190_+	adaptor protein MecA	NA	NA	NA	NA	NA
AUS13386.1|3048347_3049499_+	competence protein CoiA	NA	NA	NA	NA	NA
AUS13387.1|3049545_3051558_+	oligoendopeptidase F	NA	NA	NA	NA	NA
AUS13388.1|3051595_3051763_-	hypothetical protein	NA	NA	NA	NA	NA
AUS13389.1|3051858_3052062_-	hypothetical protein	NA	NA	NA	NA	NA
AUS13390.1|3052076_3052976_-	DsbA family protein	NA	NA	NA	NA	NA
AUS13391.1|3052972_3053371_-	thiol management oxidoreductase	NA	NA	NA	NA	NA
AUS14620.1|3053622_3054168_-	lytic transglycosylase	NA	A0A1P8CWQ1	Bacillus_phage	60.4	4.8e-39
AUS13392.1|3054371_3054944_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
AUS13393.1|3055067_3055436_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13394.1|3055464_3056100_+	GTP pyrophosphokinase YjbM	NA	NA	NA	NA	NA
AUS13395.1|3056118_3056919_+	NAD(+) kinase	NA	NA	NA	NA	NA
AUS14621.1|3056981_3057833_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AUS13396.1|3057844_3058579_-	hypothetical protein	NA	A0A1V0SJW2	Klosneuvirus	26.3	8.0e-13
AUS13397.1|3058813_3060658_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AUS13398.1|3060907_3061618_+	thiaminase II	NA	NA	NA	NA	NA
AUS13399.1|3061592_3062210_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AUS13400.1|3062193_3063303_+	glycine oxidase ThiO	NA	NA	NA	NA	NA
AUS14622.1|3063302_3063503_+	thiamine biosynthesis protein ThiS	NA	NA	NA	NA	NA
AUS13401.1|3063499_3064270_+	thiazole synthase	NA	NA	NA	NA	NA
AUS13402.1|3064266_3065277_+	thiamine biosynthesis protein MoeB	NA	NA	NA	NA	NA
AUS13403.1|3065295_3066111_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUS13404.1|3066245_3067022_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AUS13405.1|3067122_3067806_+|coat	spore coat protein	coat	NA	NA	NA	NA
AUS13406.1|3067903_3068356_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS13407.1|3068483_3068972_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS13408.1|3069123_3069633_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS13409.1|3069727_3070051_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS13410.1|3070090_3070477_-|coat	spore coat protein	coat	NA	NA	NA	NA
>prophage 7
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	3097038	3178877	4175806	terminase,protease,coat,tRNA,holin,tail,portal	Bacillus_phage(25.64%)	93	NA	NA
AUS13434.1|3097038_3097518_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AUS14625.1|3097555_3097750_-	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
AUS13435.1|3097806_3098139_-	DUF4306 domain-containing protein	NA	NA	NA	NA	NA
AUS13436.1|3098569_3098842_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13437.1|3098860_3099823_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
AUS13438.1|3099972_3100194_-|coat	spore coat protein	coat	NA	NA	NA	NA
AUS13439.1|3100446_3101850_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13440.1|3101888_3102362_-	DUF2690 domain-containing protein	NA	NA	NA	NA	NA
AUS13441.1|3102486_3102654_-	putative motility protein	NA	NA	NA	NA	NA
AUS13442.1|3102779_3103679_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13443.1|3103687_3104086_-	hypothetical protein	NA	NA	NA	NA	NA
AUS13444.1|3104187_3104763_-	hypothetical protein	NA	NA	NA	NA	NA
AUS13445.1|3104908_3107866_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
AUS13446.1|3107858_3108419_+	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
AUS13447.1|3108617_3109262_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
AUS13448.1|3109334_3109961_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
AUS13449.1|3109991_3110270_-	hypothetical protein	NA	NA	NA	NA	NA
AUS13450.1|3110668_3111859_+	cytochrome P450	NA	NA	NA	NA	NA
AUS13451.1|3111881_3113060_+	UDP-glucosyltransferase	NA	Q8JRT0	Phthorimaea_operculella_granulovirus	22.1	2.1e-07
AUS13452.1|3113103_3113292_-	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	77.6	3.4e-21
AUS13453.1|3113464_3114277_+	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AUS13454.1|3114322_3115075_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
AUS13455.1|3115074_3115827_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.3	2.5e-17
AUS13456.1|3115947_3116922_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA	NA
AUS13457.1|3117938_3118361_+	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
AUS13458.1|3118400_3119579_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUS13459.1|3119776_3121198_+	glucuronate isomerase	NA	NA	NA	NA	NA
AUS13460.1|3121265_3122645_+	MFS transporter	NA	NA	NA	NA	NA
AUS13461.1|3122750_3123764_+	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
AUS13462.1|3123769_3124789_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUS13463.1|3124813_3125893_+	mannonate dehydratase	NA	NA	NA	NA	NA
AUS13464.1|3125889_3126726_+	KR domain-containing protein	NA	M1NMS3	Moumouvirus	30.4	2.7e-09
AUS13465.1|3126773_3128042_+	MFS transporter	NA	NA	NA	NA	NA
AUS13466.1|3128129_3129131_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUS13467.1|3129207_3130650_+	altronate oxidoreductase	NA	NA	NA	NA	NA
AUS13468.1|3130646_3132140_+	altronate dehydratase	NA	NA	NA	NA	NA
AUS13469.1|3132178_3132943_-	anion permease	NA	NA	NA	NA	NA
AUS13470.1|3133165_3133630_-	hypothetical protein	NA	NA	NA	NA	NA
AUS13471.1|3133778_3135050_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	A0A1V0SEI6	Indivirus	37.1	8.6e-15
AUS13472.1|3135194_3136331_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.6	1.7e-94
AUS13473.1|3136320_3136455_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13474.1|3136485_3136740_-	hypothetical protein	NA	NA	NA	NA	NA
AUS13475.1|3136861_3137815_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	71.7	6.8e-65
AUS13476.1|3137852_3138230_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	42.3	7.9e-17
AUS13477.1|3138334_3138937_+	hypothetical protein	NA	F8WQ53	Bacillus_phage	49.2	1.7e-45
AUS13478.1|3139013_3139850_+	manganese catalase	NA	NA	NA	NA	NA
AUS13479.1|3139893_3140490_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	6.2e-40
AUS13480.1|3140654_3140993_-	XRE family transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.3	2.9e-18
AUS13481.1|3141171_3141351_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13482.1|3141337_3142174_+|portal	phage portal protein	portal	S6BFM4	Thermus_phage	29.7	1.9e-23
AUS13483.1|3142073_3142874_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	52.2	5.0e-61
AUS13484.1|3142873_3143041_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13485.1|3143125_3143476_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS13486.1|3143472_3143679_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	50.0	2.1e-11
AUS13487.1|3143793_3144303_+	DNA-directed RNA polymerase sigma-70 factor	NA	A0A0K2CNQ1	Brevibacillus_phage	39.5	3.6e-20
AUS13488.1|3144420_3145218_+|terminase	terminase	terminase	A0A0S2MVB6	Bacillus_phage	50.2	9.4e-60
AUS13489.1|3145214_3146516_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2P1JTW5	Anoxybacillus_phage	60.9	6.3e-154
AUS13490.1|3146519_3148007_+|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	55.5	5.9e-140
AUS13491.1|3148026_3148854_+|portal	phage portal protein	portal	A0A1B1P7E4	Bacillus_phage	58.7	1.6e-54
AUS13492.1|3148879_3149815_+	phage-like element PBSX protein XkdG	NA	A0A1B1P7E3	Bacillus_phage	63.8	1.1e-104
AUS13493.1|3149836_3150220_+	hypothetical protein	NA	A0A1B1P7D6	Bacillus_phage	40.5	1.4e-13
AUS13494.1|3150216_3150573_+	DUF3599 domain-containing protein	NA	NA	NA	NA	NA
AUS13495.1|3150569_3151055_+|portal	phage portal protein	portal	A0A249XXA4	Clostridium_phage	45.7	8.9e-37
AUS13496.1|3151067_3151508_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS13497.1|3151511_3151730_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13498.1|3151726_3153127_+|tail	phage tail sheath protein	tail	A0A0A7S087	Clostridium_phage	39.3	1.6e-78
AUS13499.1|3153128_3153572_+	phage-like element PBSX protein XkdM	NA	A0A0K2CNG3	Brevibacillus_phage	45.2	8.4e-26
AUS13500.1|3153698_3154103_+|portal	phage portal protein	portal	A0A249XXA9	Clostridium_phage	36.0	5.7e-13
AUS13501.1|3154132_3154282_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13502.1|3154283_3158165_+	lytic transglycosylase	NA	A0A1L2JY60	Aeribacillus_phage	45.3	9.3e-44
AUS13503.1|3158157_3158817_+	phage-like element PBSX protein XkdP	NA	A0A090DBR9	Clostridium_phage	34.0	3.7e-25
AUS13504.1|3158832_3159810_+|portal	phage portal protein	portal	H7BV96	unidentified_phage	32.3	3.9e-39
AUS13505.1|3159809_3160076_+|portal	phage portal protein	portal	S6C459	Thermus_phage	36.4	2.9e-05
AUS13506.1|3160133_3160559_+	DUF2634 domain-containing protein	NA	A0A2H4J6K5	uncultured_Caudovirales_phage	37.3	6.6e-12
AUS13507.1|3160551_3161598_+|portal	phage portal protein	portal	S6AVU3	Thermus_phage	44.3	1.3e-72
AUS13508.1|3161581_3162160_+	DUF2313 domain-containing protein	NA	A0A2H4J717	uncultured_Caudovirales_phage	34.2	5.1e-15
AUS13509.1|3162156_3162429_+	hypothetical protein	NA	NA	NA	NA	NA
AUS13510.1|3162431_3164873_+	hypothetical protein	NA	A0A2H4J4R1	uncultured_Caudovirales_phage	39.1	5.7e-23
AUS13511.1|3164890_3165217_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS13512.1|3165213_3165378_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	69.8	5.0e-16
AUS13513.1|3165422_3166262_+|portal	phage portal protein	portal	NA	NA	NA	NA
AUS13514.1|3166314_3166584_+	protein xhlA	NA	A0A2H4JD40	uncultured_Caudovirales_phage	64.8	6.2e-24
AUS13515.1|3166596_3166860_+|holin	holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	65.5	4.7e-24
AUS13516.1|3166872_3167766_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	69.2	8.9e-83
AUS13517.1|3168026_3168197_-	type II toxin-antitoxin system SpoIISB family antitoxin	NA	NA	NA	NA	NA
AUS13518.1|3168196_3168943_-	stage II sporulation protein SA	NA	NA	NA	NA	NA
AUS13519.1|3169052_3170054_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AUS13520.1|3170066_3170684_-	DUF47 domain-containing protein	NA	NA	NA	NA	NA
AUS13521.1|3170960_3172277_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA	NA
AUS13522.1|3172664_3173615_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
AUS13523.1|3173852_3176003_+	mannosyltransferase	NA	NA	NA	NA	NA
AUS13524.1|3176014_3176986_+	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	NA	A0A2H5BFL1	Salmonella_phage	41.0	1.9e-62
AUS13525.1|3177506_3178877_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	33.3	3.8e-24
>prophage 8
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	3610347	3616905	4175806		Bacillus_phage(50.0%)	6	NA	NA
AUS13939.1|3610347_3610740_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	58.3	1.1e-29
AUS13940.1|3610699_3612802_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	87.0	0.0e+00
AUS13941.1|3612819_3613809_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.8	1.1e-155
AUS13942.1|3613857_3614478_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	47.9	1.0e-45
AUS13943.1|3614541_3615309_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	49.1	1.6e-51
AUS13944.1|3615936_3616905_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.5	5.2e-52
>prophage 9
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	3819915	3822507	4175806		Bacillus_phage(100.0%)	8	NA	NA
AUS14093.1|3819915_3820272_-	hypothetical protein	NA	A0A1P8CWJ9	Bacillus_phage	87.4	4.2e-52
AUS14094.1|3820600_3820912_-	hypothetical protein	NA	NA	NA	NA	NA
AUS14095.1|3820928_3821057_-	hypothetical protein	NA	O64090	Bacillus_phage	88.4	8.6e-16
AUS14096.1|3821066_3821279_-	hypothetical protein	NA	O64089	Bacillus_phage	80.3	1.9e-23
AUS14097.1|3821282_3821534_-	hypothetical protein	NA	A0A1P8CWV6	Bacillus_phage	98.8	3.5e-37
AUS14653.1|3821599_3821779_+	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	96.4	5.8e-26
AUS14098.1|3821890_3822121_+	hypothetical protein	NA	NA	NA	NA	NA
AUS14654.1|3822129_3822507_-	hypothetical protein	NA	O64087	Bacillus_phage	74.8	3.0e-40
>prophage 10
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	3830804	3837390	4175806		Bacillus_phage(100.0%)	10	NA	NA
AUS14107.1|3830804_3830957_+	hypothetical protein	NA	A0A1P8CWZ1	Bacillus_phage	94.0	1.2e-19
AUS14108.1|3831395_3831575_-	hypothetical protein	NA	NA	NA	NA	NA
AUS14109.1|3831694_3832069_+	hypothetical protein	NA	A0A1P8CWZ2	Bacillus_phage	50.4	1.3e-27
AUS14110.1|3832853_3832976_+	hypothetical protein	NA	A0A1P8CWN5	Bacillus_phage	89.7	6.1e-11
AUS14111.1|3833156_3834272_+	aspartate phosphatase	NA	D6R410	Bacillus_phage	49.2	8.8e-96
AUS14112.1|3834268_3834391_+	Phr family secreted Rap phosphatase inhibitor	NA	NA	NA	NA	NA
AUS14113.1|3835683_3836016_-	YolD-like family protein	NA	A0A1P8CWP2	Bacillus_phage	98.2	5.0e-55
AUS14114.1|3836182_3836518_+	hypothetical protein	NA	A0A1P8CWM9	Bacillus_phage	97.3	6.1e-53
AUS14115.1|3836560_3836917_-	hypothetical protein	NA	O64028	Bacillus_phage	96.6	3.6e-59
AUS14116.1|3836922_3837390_-	DUF4879 domain-containing protein	NA	O64027	Bacillus_phage	98.7	5.7e-81
>prophage 11
CP025941	Bacillus subtilis strain BJ3-2 chromosome, complete genome	4175806	4053116	4061011	4175806		Staphylococcus_phage(57.14%)	10	NA	NA
AUS14346.1|4053116_4054265_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.4	5.0e-22
AUS14347.1|4054387_4054927_-	DUF3907 domain-containing protein	NA	NA	NA	NA	NA
AUS14348.1|4054981_4055575_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	35.4	1.5e-14
AUS14665.1|4055564_4056320_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	29.2	1.9e-09
AUS14349.1|4056533_4057058_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
AUS14350.1|4057071_4057446_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUS14351.1|4057559_4058024_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	60.0	5.5e-44
AUS14352.1|4058056_4059253_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	55.2	1.4e-115
AUS14353.1|4059267_4059915_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	45.9	1.4e-42
AUS14354.1|4059925_4061011_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	35.8	1.5e-55
