The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	275762	284380	3015092	tRNA	Vibrio_phage(33.33%)	7	NA	NA
AUR68780.1|275762_276939_+	DDE domain-containing protein	NA	Q716C2	Shigella_phage	65.1	8.6e-118
AUR68781.1|276975_278217_-	DUF4102 domain-containing protein	NA	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
AUR68782.1|278602_280480_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
AUR68783.1|280578_282342_-	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
AUR68784.1|282431_282875_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
AUR68785.1|282904_283120_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUR68786.1|283360_284380_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
>prophage 2
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	290510	297767	3015092		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AUR68797.1|290510_291302_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
AUR68798.1|291294_291921_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
AUR68799.1|291920_292850_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.7e-05
AUR68800.1|292923_293931_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
AUR68801.1|294023_296612_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
AUR68802.1|296879_297767_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 3
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	529390	536583	3015092		Faustovirus(16.67%)	9	NA	NA
AUR68993.1|529390_530605_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
AUR68994.1|530641_531025_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
AUR68995.1|531085_531409_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
AUR68996.1|531457_531973_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AUR68997.1|531996_533847_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
AUR68998.1|533860_534199_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AUR68999.1|534247_534442_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AUR69000.1|534661_535951_+	peptidase B	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
AUR69001.1|536154_536583_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 4
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	1275586	1308204	3015092		Vibrio_phage(42.86%)	28	NA	NA
AUR69643.1|1275586_1277749_-	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	27.1	5.0e-39
AUR69644.1|1278106_1278466_+	peptide chain release factor 1	NA	NA	NA	NA	NA
AUR69645.1|1278491_1278953_+	toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
AUR69646.1|1278937_1292614_+	multifunctional autoprocessing toxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
AUR69647.1|1292981_1293206_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
AUR69648.1|1293299_1293674_-	hypothetical protein	NA	B9V3G5	Vibrio_virus	100.0	1.2e-68
AUR69649.1|1293651_1294731_-	replication initiation factor family protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
AUR69650.1|1294856_1295195_+	XRE family transcriptional regulator	NA	U5TNA1	Satellite_phage	96.4	2.6e-51
AUR69651.1|1295546_1295699_+	lipoate--protein ligase	NA	B1B6U1	Vibrio_virus	100.0	4.0e-20
AUR69652.1|1295807_1296182_-	enterotoxin	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
AUR69653.1|1296178_1296955_-	enterotoxin	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
AUR69654.1|1297053_1298253_-	Zona occludens toxin	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
AUR69655.1|1298249_1298543_-	hypothetical protein	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
AUR69656.1|1298539_1299823_-	septation ring formation regulator EzrA	NA	A0A142I701	Vibrio_phage	100.0	9.1e-222
AUR69657.1|1299833_1300082_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
AUR69658.1|1300217_1300598_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
AUR69659.1|1300575_1301655_-	replication initiation factor family protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
AUR69660.1|1301780_1302119_+	transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
AUR69661.1|1302459_1302612_+	lipoate--protein ligase	NA	B1B6U1	Vibrio_virus	98.0	2.0e-19
AUR69662.1|1302608_1303193_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
AUR69663.1|1303185_1303353_-	helicase	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
AUR69664.1|1303430_1304123_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUR69665.1|1304252_1304537_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69666.1|1304541_1306110_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
AUR69667.1|1306271_1306838_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUR69668.1|1307265_1307430_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AUR69669.1|1307876_1308044_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69670.1|1308036_1308204_-	helicase	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
>prophage 5
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	1311997	1362203	3015092	protease,transposase,tail,terminase,portal,capsid,head	Vibrio_phage(46.67%)	48	NA	NA
AUR69675.1|1311997_1313219_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
AUR69676.1|1313386_1313551_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AUR69677.1|1314128_1314488_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	7.6e-09
AUR69678.1|1314598_1314931_-	DUF3634 domain-containing protein	NA	NA	NA	NA	NA
AUR69679.1|1314935_1315445_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
AUR69680.1|1315401_1317198_+|protease	ATP-dependent protease LonB	protease	NA	NA	NA	NA
AUR69681.1|1317262_1317781_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AUR69682.1|1317863_1318037_-	ribosome modulation factor	NA	NA	NA	NA	NA
AUR69683.1|1318204_1319899_-	DUF3466 domain-containing protein	NA	NA	NA	NA	NA
AUR69684.1|1319904_1321824_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	7.6e-55
AUR69685.1|1321801_1322044_-	glutaredoxin family protein	NA	NA	NA	NA	NA
AUR69686.1|1322052_1324179_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
AUR69687.1|1324638_1325181_-	cell division protein ZapC	NA	NA	NA	NA	NA
AUR69688.1|1325335_1326346_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUR69689.1|1326419_1331261_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
AUR69690.1|1331449_1331686_-	DUF2835 domain-containing protein	NA	NA	NA	NA	NA
AUR69691.1|1331719_1334344_-	aminopeptidase N	NA	NA	NA	NA	NA
AUR71195.1|1334416_1334653_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR69692.1|1335601_1336114_+	hypothetical protein	NA	NA	NA	NA	NA
AUR71196.1|1336430_1337696_+	ATP-binding protein	NA	NA	NA	NA	NA
AUR69693.1|1337697_1338120_+	hypothetical protein	NA	NA	NA	NA	NA
AUR69694.1|1338183_1338549_-	peptidase M15	NA	A0A2I7RAT1	Vibrio_phage	60.3	8.7e-37
AUR69695.1|1338532_1339090_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69696.1|1339089_1340097_-	radical SAM protein	NA	NA	NA	NA	NA
AUR69697.1|1340113_1340479_-	hypothetical protein	NA	C8ZKF3	Pseudomonas_phage	46.2	1.8e-05
AUR69698.1|1340479_1346422_-	fibronectin type III domain-containing protein	NA	M4MHT9	Vibrio_phage	30.9	2.0e-98
AUR69699.1|1346425_1346821_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69700.1|1346823_1347363_-	hypothetical protein	NA	M4MD40	Vibrio_phage	35.1	4.5e-21
AUR69701.1|1347373_1347955_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69702.1|1347956_1350269_-|tail	phage tail tape measure protein	tail	A0A1Q1PW43	Pseudoalteromonas_phage	22.6	4.4e-09
AUR69703.1|1350285_1350576_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69704.1|1350620_1350956_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69705.1|1351008_1351479_-	hypothetical protein	NA	NA	NA	NA	NA
AUR71197.1|1351492_1351816_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69706.1|1351863_1352475_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69707.1|1352461_1352809_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69708.1|1352820_1353372_-	hypothetical protein	NA	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
AUR69709.1|1353386_1354577_-|capsid	phage major capsid protein	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
AUR69710.1|1354675_1355524_-|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
AUR69711.1|1355486_1356812_-|portal	phage portal protein	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
AUR69712.1|1356821_1358582_-|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
AUR69713.1|1358590_1358773_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69714.1|1358772_1358988_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69715.1|1359015_1359696_-	hypothetical protein	NA	NA	NA	NA	NA
AUR71199.1|1359692_1360136_-	hypothetical protein	NA	NA	NA	NA	NA
AUR71198.1|1360278_1360689_-|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JP17	Morganella_phage	31.6	5.8e-05
AUR69716.1|1361159_1361348_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69717.1|1361558_1362203_+	antirestriction protein	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
>prophage 6
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	1366858	1374585	3015092		Diadromus_pulchellus_ascovirus(14.29%)	10	NA	NA
AUR69723.1|1366858_1367446_-	deoxyguanosine kinase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
AUR69724.1|1367465_1367735_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69725.1|1367731_1367929_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69726.1|1367939_1368533_-	deoxynucleoside kinase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
AUR69727.1|1368665_1368923_-	hypothetical protein	NA	NA	NA	NA	NA
AUR69728.1|1368919_1369204_-	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	3.9e-08
AUR69729.1|1369386_1370247_-	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
AUR69730.1|1370440_1370872_-	tellurite resistance protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
AUR69731.1|1370896_1372951_-	DNA polymerase	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
AUR69732.1|1372950_1374585_-	DNA primase	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
>prophage 7
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	1712201	1719101	3015092	tail,transposase	Vibrio_phage(83.33%)	11	NA	NA
AUR70020.1|1712201_1712408_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.9	1.9e-09
AUR70021.1|1712521_1712998_+	DNA repair protein RadC	NA	NA	NA	NA	NA
AUR70022.1|1713227_1713923_-	chemotaxis protein	NA	A0A2I7S9D9	Vibrio_phage	35.4	1.2e-18
AUR70023.1|1713919_1715097_-|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
AUR70024.1|1715139_1716180_-|tail	phage tail tape measure protein	tail	A0A2I7S9D9	Vibrio_phage	72.5	2.6e-126
AUR70025.1|1716314_1716674_-	hypothetical protein	NA	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
AUR70026.1|1716722_1717100_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AUR70027.1|1717154_1717733_-	glyoxalase	NA	NA	NA	NA	NA
AUR70028.1|1717751_1718072_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR70029.1|1718058_1718433_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR70030.1|1718834_1719101_-	regulator of ribonuclease activity A	NA	M1Q554	Vibrio_phage	33.8	1.4e-07
>prophage 8
CP025936	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015092	2199197	2205814	3015092		Staphylococcus_phage(66.67%)	7	NA	NA
AUR70467.1|2199197_2199668_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
AUR70468.1|2199932_2201042_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
AUR70469.1|2201082_2201736_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
AUR70470.1|2201740_2202844_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
AUR70471.1|2202869_2203319_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AUR70472.1|2203418_2204672_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
AUR70473.1|2204680_2205814_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
