The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	0	65104	4162596	protease,tRNA,transposase	Natrialba_phage(12.5%)	59	NA	NA
AUR76083.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUR76084.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AUR76085.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUR76086.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUR76087.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUR76088.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUR76089.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76090.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUR76091.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUR76092.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUR76093.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUR76094.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUR76095.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUR76096.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUR76097.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUR76098.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUR79532.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AUR76099.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76100.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUR76101.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR76102.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76103.1|28314_28614_-	CoA transferase	NA	NA	NA	NA	NA
AUR76104.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76105.1|29141_30368_-	thiolase	NA	NA	NA	NA	NA
AUR76106.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUR79533.1|31069_31978_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76107.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR76108.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUR76109.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76110.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUR76111.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUR76112.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUR76113.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUR76114.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUR76115.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76116.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUR76117.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUR76118.1|43346_43646_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76119.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76120.1|44712_45663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76121.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76122.1|46769_47006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUR76123.1|47133_48027_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76124.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUR76125.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUR76126.1|51012_51204_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76127.1|51190_52141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76128.1|52183_53440_+	MFS transporter	NA	NA	NA	NA	NA
AUR76129.1|54671_55406_-	glutamate racemase	NA	NA	NA	NA	NA
AUR76130.1|55411_56002_-	glutamate/aspartate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUR76131.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR76132.1|56712_57474_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUR76133.1|57553_58453_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76134.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76135.1|60297_61524_-	serine kinase HipA	NA	NA	NA	NA	NA
AUR76136.1|61523_61943_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76137.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76138.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76139.1|64522_65104_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	70134	124171	4162596	tRNA,transposase	Planktothrix_phage(20.0%)	52	NA	NA
AUR76145.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76146.1|71178_71493_+|transposase	transposase	transposase	NA	NA	NA	NA
AUR76147.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUR76148.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUR76149.1|75406_75988_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUR76150.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79534.1|76329_77079_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76151.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUR76152.1|78683_79634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79535.1|79708_80653_+|transposase	transposase	transposase	NA	NA	NA	NA
AUR76153.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUR76154.1|83871_84576_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUR76155.1|84572_85679_-	glycosyl transferase	NA	NA	NA	NA	NA
AUR76156.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
AUR76157.1|86530_87763_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUR76158.1|87780_89040_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUR76159.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUR76160.1|90159_91260_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUR76161.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUR76162.1|91842_92895_-	oxidoreductase	NA	NA	NA	NA	NA
AUR76163.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUR76164.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUR76165.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76166.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AUR76167.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUR76168.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR76169.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUR76170.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76171.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR76172.1|101578_102835_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AUR76173.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUR76174.1|103857_104133_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUR76175.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
AUR76176.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AUR76177.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUR76178.1|106486_107383_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR76179.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUR76180.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76181.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUR76182.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AUR76183.1|112292_112976_-	cell division protein	NA	NA	NA	NA	NA
AUR76184.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUR79536.1|114955_115303_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76185.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79537.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR76186.1|117085_117886_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR76187.1|117882_118758_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR76188.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76189.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUR76190.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
AUR76191.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76192.1|123220_124171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	137255	209776	4162596	tRNA,transposase	Bacillus_phage(16.67%)	59	NA	NA
AUR76200.1|137255_138206_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76201.1|138223_138577_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76202.1|138624_140133_-	PLP-dependent threonine dehydratase	NA	NA	NA	NA	NA
AUR76203.1|140879_144842_+	FAD-linked oxidase	NA	NA	NA	NA	NA
AUR76204.1|144894_145677_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76205.1|145764_146988_-	CoA transferase	NA	NA	NA	NA	NA
AUR79541.1|146971_147904_-	lipase	NA	NA	NA	NA	NA
AUR76206.1|147909_148722_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR79542.1|150033_150957_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76207.1|151123_151906_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76208.1|152672_153653_-	carboxylase	NA	NA	NA	NA	NA
AUR76209.1|153649_154378_-	allophanate hydrolase	NA	NA	NA	NA	NA
AUR76210.1|154402_154834_-	glyoxalase	NA	NA	NA	NA	NA
AUR76211.1|154935_155811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76212.1|155862_157083_-	D-3-phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
AUR76213.1|157166_157628_-	metal-binding protein	NA	NA	NA	NA	NA
AUR76214.1|157733_159131_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUR76215.1|159127_159805_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
AUR76216.1|159860_161171_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
AUR76217.1|161182_161881_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
AUR76218.1|162044_162821_+	ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	NA	NA	NA	NA	NA
AUR76219.1|162986_164009_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76220.1|164237_164873_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76221.1|164869_166432_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
AUR76222.1|166990_167941_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76223.1|169384_170287_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76224.1|170264_170894_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76225.1|171224_172607_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AUR76226.1|172640_173270_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUR76227.1|173318_174926_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUR76228.1|174950_175634_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79543.1|175715_176192_-	bacterioferritin	NA	NA	NA	NA	NA
AUR76229.1|176398_177349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76230.1|178464_178992_+	lipoprotein	NA	NA	NA	NA	NA
AUR76231.1|179083_179899_+	lipoprotein	NA	NA	NA	NA	NA
AUR76232.1|179959_180694_+	sulfurtransferase	NA	NA	NA	NA	NA
AUR76233.1|180731_182810_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUR76234.1|183059_183332_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76235.1|183430_184519_+	ATP-binding protein	NA	NA	NA	NA	NA
AUR76236.1|184522_186427_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AUR76237.1|186423_190122_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AUR76238.1|190182_190746_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUR76239.1|190753_191176_-	glyoxalase	NA	NA	NA	NA	NA
AUR76240.1|191203_191623_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AUR79544.1|191651_192125_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
AUR76241.1|192224_192722_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76242.1|192876_195147_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUR76243.1|195195_196428_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76244.1|196525_197476_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76245.1|197521_198214_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AUR76246.1|198210_199104_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUR76247.1|199498_200599_+	aminomethyltransferase	NA	NA	NA	NA	NA
AUR76248.1|200680_201055_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUR76249.1|201114_203979_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUR76250.1|204123_204864_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76251.1|204933_206145_+	CoA transferase	NA	NA	NA	NA	NA
AUR76252.1|206173_207142_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76253.1|207755_208706_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76254.1|208825_209776_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	252940	305276	4162596	protease,tRNA,transposase	Bacillus_phage(25.0%)	49	NA	NA
AUR76292.1|252940_253882_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUR76293.1|253878_255768_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUR76294.1|255854_256493_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79546.1|256635_257880_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AUR76295.1|257951_258488_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUR76296.1|258639_260031_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AUR76297.1|260047_261028_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76298.1|261163_262147_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76299.1|262211_263111_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76300.1|263217_264972_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
AUR76301.1|264979_266104_-	CoA transferase	NA	NA	NA	NA	NA
AUR76302.1|266117_267098_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76303.1|267828_268779_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76304.1|268793_269165_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76305.1|269338_269884_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76306.1|269967_271587_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUR76307.1|271602_272757_+	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUR76308.1|272770_272896_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUR76309.1|272892_274644_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUR76310.1|274640_276320_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUR76311.1|276382_276931_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUR76312.1|278073_278352_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76313.1|279395_280346_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76314.1|280332_280548_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76315.1|280623_280785_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUR76316.1|280792_280933_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76317.1|281451_281901_-	stringent starvation protein B	NA	NA	NA	NA	NA
AUR76318.1|281910_282522_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUR76319.1|282680_283529_-	cytochrome c1	NA	NA	NA	NA	NA
AUR76320.1|283554_284937_-	cytochrome b	NA	NA	NA	NA	NA
AUR76321.1|285001_285643_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUR76322.1|285782_286241_+	large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
AUR76323.1|286265_287042_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUR79547.1|287095_288232_+|protease	protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
AUR76324.1|288228_289179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76325.1|289277_289904_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76326.1|289926_290853_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUR76327.1|290861_292448_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76328.1|292444_293449_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUR76329.1|293648_294509_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76330.1|294540_295542_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76331.1|295612_296422_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76332.1|296499_298359_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUR76333.1|298487_299690_-	MFS transporter	NA	NA	NA	NA	NA
AUR76334.1|299803_300685_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76335.1|302187_302748_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUR76336.1|302807_303758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76337.1|303949_304210_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76338.1|304325_305276_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	393113	526136	4162596	transposase,integrase	Bacillus_virus(13.64%)	108	456121:456138	531643:531660
AUR76422.1|393113_394064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76423.1|394152_395067_+	EamA family transporter	NA	NA	NA	NA	NA
AUR76424.1|395063_395723_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76425.1|395812_396736_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AUR76426.1|396741_397197_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76427.1|397193_398297_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76428.1|398484_400104_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AUR76429.1|400100_401159_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AUR76430.1|401288_401783_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUR76431.1|401875_402853_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76432.1|403048_404254_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUR76433.1|404250_405762_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR79553.1|405777_407091_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AUR76434.1|407281_407461_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76435.1|407870_408605_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUR76436.1|411049_412000_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76437.1|412131_412530_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUR76438.1|412940_413411_-	universal stress protein	NA	NA	NA	NA	NA
AUR76439.1|413499_413844_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AUR76440.1|413943_415344_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76441.1|417132_417651_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUR76442.1|417761_418517_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUR76443.1|418712_419945_+	CoA transferase	NA	NA	NA	NA	NA
AUR76444.1|419937_420723_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR76445.1|420789_421761_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76446.1|421771_422749_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76447.1|422874_424047_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR76448.1|424073_425102_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR76449.1|425167_426361_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUR76450.1|428142_429093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76451.1|429191_430097_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76452.1|430272_430476_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AUR76453.1|430986_431427_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76454.1|431456_432116_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76455.1|432201_433842_-	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AUR76456.1|433838_435302_-	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AUR76457.1|435332_438719_-	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AUR76458.1|438860_439265_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76459.1|439408_440395_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76460.1|440381_440663_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76461.1|441408_442641_-	2-methylfumaryl-CoA isomerase	NA	NA	NA	NA	NA
AUR76462.1|442640_443135_-	dehydratase	NA	NA	NA	NA	NA
AUR76463.1|443266_444229_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76464.1|444206_445460_-	CoA transferase	NA	NA	NA	NA	NA
AUR76465.1|445581_446532_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76466.1|446630_447581_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76467.1|448135_448510_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76468.1|448584_449643_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUR76469.1|449666_450617_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79554.1|454768_456376_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
456121:456138	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AUR76470.1|456422_458444_+	3-methylcrotonyl-CoA carboxylase	NA	NA	NA	NA	NA
AUR76471.1|458472_458718_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76472.1|458731_459922_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AUR76473.1|460117_461083_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76474.1|461105_462245_-	alanine racemase	NA	NA	NA	NA	NA
AUR76475.1|462456_463419_+	immunogenic protein	NA	NA	NA	NA	NA
AUR76476.1|463542_465567_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUR76477.1|465763_468007_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUR76478.1|468285_468744_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76479.1|469671_472293_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76480.1|472356_474984_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AUR76481.1|475135_476200_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76482.1|476196_476970_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AUR76483.1|476978_477812_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR76484.1|477824_478604_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AUR76485.1|478677_480111_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUR76486.1|480138_480897_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUR76487.1|480952_482803_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AUR76488.1|482896_483373_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR76489.1|483389_484310_-	bestrophin	NA	NA	NA	NA	NA
AUR76490.1|484416_484917_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AUR76491.1|485290_485983_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AUR76492.1|486291_487242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76493.1|487358_488426_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AUR76494.1|488501_491630_-	ribonuclease E/G	NA	NA	NA	NA	NA
AUR76495.1|492137_493103_+	23S rRNA pseudouridine(955/2504/2580) synthase	NA	NA	NA	NA	NA
AUR76496.1|493105_493777_+	hydrolase	NA	NA	NA	NA	NA
AUR76497.1|493933_494893_+	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AUR76498.1|494900_495563_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AUR76499.1|495559_496510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76500.1|498066_498912_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR76501.1|498999_500163_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUR79555.1|500581_501553_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76502.1|501591_503019_-	amidase	NA	NA	NA	NA	NA
AUR76503.1|503138_503930_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76504.1|504048_506502_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUR76505.1|506596_507706_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUR76506.1|507708_509118_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AUR76507.1|509523_509658_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUR76508.1|509753_510125_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AUR76509.1|510121_510394_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUR76510.1|510442_512134_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUR76511.1|512364_513315_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76512.1|513772_514696_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76513.1|514704_515103_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76514.1|515344_517315_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76515.1|518801_519791_+|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUR76516.1|519787_519988_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUR76517.1|519988_520108_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76518.1|520100_520442_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AUR76519.1|520452_521640_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUR76520.1|521673_522201_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76521.1|522258_522906_-	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUR76522.1|522902_523889_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUR76523.1|523892_524075_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76524.1|524071_524449_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76525.1|524682_525150_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUR76526.1|525185_526136_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
531643:531660	attR	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
>prophage 6
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	655400	723715	4162596	tRNA,transposase	Acanthocystis_turfacea_Chlorella_virus(11.11%)	59	NA	NA
AUR76646.1|655400_656351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76647.1|656449_657400_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79559.1|657396_657804_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76648.1|657800_658469_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76649.1|659087_660059_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUR79560.1|660165_661128_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76650.1|661246_662968_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
AUR76651.1|663011_664142_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR76652.1|664155_665346_-	pimeloyl-CoA dehydrogenase large subunit	NA	NA	NA	NA	NA
AUR76653.1|665526_666546_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79561.1|666678_667851_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
AUR76654.1|667843_668518_-	fimbrial assembly protein FimA	NA	NA	NA	NA	NA
AUR76655.1|668528_668957_-	enamine deaminase RidA	NA	NA	NA	NA	NA
AUR76656.1|668987_670262_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR76657.1|670626_671610_+	oxidoreductase	NA	NA	NA	NA	NA
AUR79562.1|671693_672638_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76658.1|672785_674927_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUR76659.1|674926_675706_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR76660.1|676104_676998_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76661.1|677061_678081_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79563.1|678137_679118_+	NAD-dependent epimerase/dehydratase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
AUR76662.1|679315_681148_-	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
AUR76663.1|681297_681786_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR76664.1|681807_683025_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUR76665.1|683021_685139_-	crotonase	NA	NA	NA	NA	NA
AUR76666.1|685396_687199_+	DNA alkylation response protein	NA	NA	NA	NA	NA
AUR76667.1|687280_688267_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76668.1|688318_690508_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUR76669.1|690504_691302_+	citryl-CoA lyase	NA	NA	NA	NA	NA
AUR76670.1|691298_692135_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76671.1|692154_694530_+	biotin transporter BioY	NA	NA	NA	NA	NA
AUR76672.1|694453_694642_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76673.1|694628_695579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76674.1|695677_696628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76675.1|697350_698625_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AUR76676.1|698711_699794_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AUR76677.1|699804_700617_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AUR76678.1|700653_700980_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AUR76679.1|700984_701545_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AUR76680.1|701785_702778_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76681.1|702796_703792_+	4,5-dihydroxyphthalate decarboxylase	NA	NA	NA	NA	NA
AUR76682.1|703807_705184_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AUR76683.1|705176_707558_+	dehydrogenase	NA	NA	NA	NA	NA
AUR76684.1|707544_707964_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79564.1|708090_708321_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76685.1|708425_709376_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76686.1|709474_710425_-	lipoprotein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AUR76687.1|710421_711294_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AUR76688.1|712224_713511_+	cytochrome c	NA	NA	NA	NA	NA
AUR76689.1|713564_714491_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AUR79565.1|714509_714965_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUR76690.1|715241_715463_-	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUR76691.1|715816_716608_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AUR76692.1|716639_717260_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AUR76693.1|717256_717886_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUR76694.1|717898_718507_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AUR76695.1|718503_719493_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AUR76696.1|719598_720813_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUR79566.1|722764_723715_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	734375	814221	4162596	transposase	Planktothrix_phage(40.0%)	59	NA	NA
AUR76704.1|734375_735374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76705.1|735533_736406_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
AUR76706.1|736746_736965_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76707.1|737004_738384_-	aminotransferase	NA	NA	NA	NA	NA
AUR76708.1|738425_739823_-	amidase	NA	NA	NA	NA	NA
AUR76709.1|739862_741515_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
AUR76710.1|741518_742403_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR76711.1|742402_743344_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR76712.1|743422_745042_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76713.1|745208_746024_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76714.1|746091_746661_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76715.1|746661_747612_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76716.1|748266_749364_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUR76717.1|749397_750663_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUR76718.1|750820_751771_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76719.1|752014_752605_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUR79569.1|752620_755065_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR76720.1|755184_756156_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76721.1|756771_757722_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76722.1|757943_760139_-	DNA methylase	NA	NA	NA	NA	NA
AUR76723.1|760211_760619_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76724.1|760741_761692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76725.1|761807_762251_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76726.1|762313_763108_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76727.1|763273_764410_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUR76728.1|764480_765614_-	GTPase ObgE	NA	NA	NA	NA	NA
AUR76729.1|765763_766024_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUR76730.1|766057_766369_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUR76731.1|766793_767942_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUR76732.1|768056_769022_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUR76733.1|769290_770157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76734.1|775980_777834_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76735.1|777888_779370_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUR76736.1|779385_779973_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUR79570.1|780055_780235_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76737.1|780421_785542_+	bifunctional hemolysin/adenylate cyclase	NA	NA	NA	NA	NA
AUR76738.1|785619_787758_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUR76739.1|787754_789077_+	protein CyaD	NA	NA	NA	NA	NA
AUR76740.1|789078_790503_+	protein CyaE	NA	NA	NA	NA	NA
AUR76741.1|790593_791502_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76742.1|791566_792481_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76743.1|793318_794002_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR76744.1|794018_794762_+	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AUR76745.1|794791_795652_+	aminotransferase	NA	NA	NA	NA	NA
AUR76746.1|795659_796226_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76747.1|796314_797271_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR76748.1|797315_798068_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
AUR76749.1|798064_799810_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUR76750.1|801973_802696_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76751.1|802840_803848_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUR76752.1|803888_805421_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUR76753.1|805417_806536_-	deacylase	NA	NA	NA	NA	NA
AUR76754.1|806532_807315_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR76755.1|807326_808190_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUR79571.1|808208_809306_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76756.1|809374_810301_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76757.1|810335_812030_-	acetolactate synthase	NA	NA	NA	NA	NA
AUR76758.1|812229_813165_-	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUR76759.1|813270_814221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	869777	923908	4162596	holin,transposase	Ostreococcus_lucimarinus_virus(25.0%)	43	NA	NA
AUR76800.1|869777_870728_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76801.1|870809_871421_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76802.1|871891_873607_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUR76803.1|873617_874109_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUR76804.1|874181_875198_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUR76805.1|875365_876145_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUR76806.1|876163_876691_-	lipoprotein	NA	NA	NA	NA	NA
AUR76807.1|876689_876896_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76808.1|876984_877254_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUR76809.1|877344_879504_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUR76810.1|879624_880344_+	lipoprotein	NA	NA	NA	NA	NA
AUR76811.1|880340_881291_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76812.1|881431_882649_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUR76813.1|882642_883254_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUR76814.1|883887_884865_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUR76815.1|885008_885755_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUR76816.1|885776_886223_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUR76817.1|887010_889242_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUR76818.1|889264_890065_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76819.1|890346_891579_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUR76820.1|891689_892679_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76821.1|892709_894098_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76822.1|895696_896680_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR79574.1|896876_897893_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR76823.1|898089_898914_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUR76824.1|898991_899915_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AUR76825.1|900085_901237_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUR76826.1|901270_902272_+	peptidase M14	NA	NA	NA	NA	NA
AUR76827.1|902400_903372_+	hypothetical protein	NA	NA	NA	NA	NA
AUR76828.1|903396_905481_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUR76829.1|905547_906540_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76830.1|906648_907983_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76831.1|908008_910021_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUR79575.1|910017_912066_-	hydantoinase	NA	NA	NA	NA	NA
AUR76832.1|912169_912817_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR76833.1|912957_913452_+	azurin	NA	NA	NA	NA	NA
AUR76834.1|913495_914167_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76835.1|914181_915675_-	RND transporter	NA	NA	NA	NA	NA
AUR76836.1|915671_918785_-	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUR76837.1|918797_919904_-	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUR76838.1|920027_920696_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR76839.1|920916_921867_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76840.1|921949_923908_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 9
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1077487	1147761	4162596	tRNA,transposase	Enterococcus_phage(14.29%)	59	NA	NA
AUR79580.1|1077487_1078504_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR76974.1|1080012_1080585_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AUR76975.1|1080644_1081376_+	pseudouridylate synthase	NA	NA	NA	NA	NA
AUR79581.1|1081427_1082345_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR76976.1|1083152_1086332_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUR76977.1|1086328_1087711_+	multidrug transporter	NA	NA	NA	NA	NA
AUR76978.1|1087780_1088032_-	hypothetical protein	NA	NA	NA	NA	NA
AUR76979.1|1088177_1088792_-	SCO family protein	NA	NA	NA	NA	NA
AUR76980.1|1088978_1091039_-	oligopeptidase A	NA	NA	NA	NA	NA
AUR76981.1|1091167_1092019_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AUR76982.1|1092015_1092642_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR76983.1|1092638_1094393_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AUR76984.1|1094685_1097391_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUR76985.1|1097403_1099065_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AUR76986.1|1099077_1100868_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AUR76987.1|1101089_1102265_-	flagellin	NA	NA	NA	NA	NA
AUR76988.1|1102307_1103258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR76989.1|1103356_1104097_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUR76990.1|1104291_1106328_+	transketolase	NA	NA	NA	NA	NA
AUR76991.1|1106345_1107356_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUR76992.1|1107473_1108667_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUR76993.1|1108696_1109470_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUR76994.1|1109466_1110657_-	acetate kinase	NA	NA	NA	NA	NA
AUR76995.1|1110682_1111621_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUR79582.1|1111617_1113966_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUR76996.1|1114120_1114762_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUR76997.1|1114865_1115999_-|transposase	transposase	transposase	NA	NA	NA	NA
AUR76998.1|1116275_1116824_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUR76999.1|1116842_1117328_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUR77000.1|1117505_1118444_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUR77001.1|1118446_1118764_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77002.1|1118809_1119754_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77003.1|1119774_1121250_-	anion permease	NA	NA	NA	NA	NA
AUR77004.1|1121434_1122085_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUR77005.1|1122138_1122474_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77006.1|1122470_1123331_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUR77007.1|1123347_1123629_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77008.1|1123702_1123966_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUR77009.1|1124209_1125160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77010.1|1125458_1126196_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUR77011.1|1126631_1126955_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUR77012.1|1126989_1127550_+	transcriptional activator FlhC	NA	NA	NA	NA	NA
AUR77013.1|1127670_1128546_+	chemotaxis protein MotA	NA	NA	NA	NA	NA
AUR77014.1|1128558_1129506_+	chemotaxis protein MotB	NA	NA	NA	NA	NA
AUR77015.1|1129607_1129901_+	response regulator	NA	NA	NA	NA	NA
AUR77016.1|1129927_1131985_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUR77017.1|1131999_1132500_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUR77018.1|1132573_1134280_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUR77019.1|1135143_1136196_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUR77020.1|1136248_1136638_+	response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUR77021.1|1136646_1137279_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUR79583.1|1137378_1138395_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR79584.1|1139225_1140233_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUR77022.1|1140229_1141873_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUR77023.1|1141869_1142757_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUR77024.1|1142897_1143371_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AUR77025.1|1143360_1144383_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUR77026.1|1144379_1145807_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUR79585.1|1146744_1147761_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1151513	1218703	4162596	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
AUR77030.1|1151513_1152464_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77031.1|1152562_1153699_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUR77032.1|1153695_1154769_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AUR77033.1|1154926_1156363_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AUR79586.1|1156453_1157095_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUR79587.1|1157430_1158447_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR77034.1|1158779_1161512_+	pertactin autotransporter	NA	NA	NA	NA	NA
AUR79588.1|1161578_1163000_-	siroheme synthase	NA	NA	NA	NA	NA
AUR77035.1|1163263_1163980_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77036.1|1164064_1164382_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77037.1|1164422_1164836_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77038.1|1164837_1165197_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77039.1|1165239_1166784_-	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AUR77040.1|1166867_1167698_+	transglycosylase	NA	NA	NA	NA	NA
AUR77041.1|1167732_1168887_-	aminotransferase	NA	NA	NA	NA	NA
AUR77042.1|1168929_1169802_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77043.1|1169918_1172207_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUR77044.1|1173413_1173878_+	barstar family protein 2	NA	NA	NA	NA	NA
AUR77045.1|1173904_1174855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79589.1|1175222_1175999_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AUR77046.1|1176043_1176901_-	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AUR77047.1|1176922_1177939_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AUR77048.1|1178073_1179114_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	39.9	3.0e-50
AUR77049.1|1179308_1181390_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
AUR77050.1|1181625_1183119_+	exopolyphosphatase	NA	NA	NA	NA	NA
AUR77051.1|1183349_1184144_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUR77052.1|1184364_1185723_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AUR77053.1|1185719_1186562_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AUR77054.1|1186580_1188467_-	cell division protein FtsH	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AUR77055.1|1188704_1189337_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AUR77056.1|1189355_1189958_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77057.1|1190109_1191060_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77058.1|1191158_1192109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77059.1|1192911_1193712_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77060.1|1193755_1194742_-	homoserine kinase	NA	NA	NA	NA	NA
AUR77061.1|1194881_1195895_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AUR77062.1|1195891_1196842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77063.1|1196954_1197413_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AUR77064.1|1197449_1198763_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77065.1|1198780_1199152_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77066.1|1199148_1200612_+	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AUR77067.1|1200704_1201481_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR77068.1|1201462_1204342_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUR77069.1|1204524_1205475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77070.1|1205729_1205906_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77071.1|1206173_1209404_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR77072.1|1209685_1210513_-	deoxyribonuclease	NA	NA	NA	NA	NA
AUR77073.1|1210546_1211242_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AUR77074.1|1211234_1212515_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR77075.1|1212524_1213502_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79590.1|1213483_1215184_+	single-stranded-DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AUR77076.1|1216420_1217176_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR77077.1|1217182_1218703_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1226330	1286166	4162596	tRNA,transposase	Erysipelothrix_phage(50.0%)	42	NA	NA
AUR77085.1|1226330_1227281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77086.1|1227415_1231342_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR77087.1|1235037_1236006_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR77088.1|1236075_1236921_+	phosphatase	NA	NA	NA	NA	NA
AUR77089.1|1236988_1237543_+	transcription elongation factor	NA	NA	NA	NA	NA
AUR77090.1|1237589_1238540_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77091.1|1238638_1239262_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
AUR77092.1|1239440_1241723_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUR77093.1|1241877_1244574_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AUR77094.1|1244699_1245188_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77095.1|1245223_1247272_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AUR77096.1|1247596_1250467_+	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
AUR77097.1|1250512_1251727_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUR77098.1|1251956_1253384_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUR77099.1|1253424_1254573_+	cell division protein ZapE	NA	NA	NA	NA	NA
AUR77100.1|1254585_1255344_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUR77101.1|1255431_1256334_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77102.1|1256330_1257281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77103.1|1257410_1258394_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUR77104.1|1258448_1259171_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR77105.1|1259638_1260589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77106.1|1261310_1261844_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUR77107.1|1261836_1262799_+	signal transduction protein	NA	NA	NA	NA	NA
AUR77108.1|1262892_1265370_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR77109.1|1265486_1265795_+	iron transporter	NA	NA	NA	NA	NA
AUR77110.1|1267439_1267766_+	iron uptake protein	NA	NA	NA	NA	NA
AUR77111.1|1267914_1268865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77112.1|1268874_1270230_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUR77113.1|1270310_1272686_-	protein tex	NA	NA	NA	NA	NA
AUR77114.1|1272850_1274926_+	helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUR77115.1|1274987_1275788_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUR77116.1|1275889_1276852_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUR77117.1|1276839_1277595_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77118.1|1277702_1279340_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUR77119.1|1279407_1280145_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUR77120.1|1280247_1280823_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUR77121.1|1280995_1281532_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77122.1|1281534_1281879_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA	NA
AUR77123.1|1281894_1282740_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AUR77124.1|1282778_1284158_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AUR77125.1|1284235_1285117_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA	NA
AUR77126.1|1285215_1286166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1349521	1426320	4162596	tRNA,transposase	Bacillus_virus(22.22%)	60	NA	NA
AUR77184.1|1349521_1350472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77185.1|1350468_1351119_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUR79598.1|1351124_1352786_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AUR77186.1|1352965_1354327_+	DNA repair protein RadA	NA	NA	NA	NA	NA
AUR77187.1|1354349_1355123_+	anion permease	NA	NA	NA	NA	NA
AUR77188.1|1355281_1355509_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77189.1|1355582_1356989_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AUR77190.1|1356985_1358722_-	glycosyltransferase	NA	NA	NA	NA	NA
AUR77191.1|1358837_1359104_-	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
AUR77192.1|1359272_1360127_-	tryptophan 2,3-dioxygenase	NA	NA	NA	NA	NA
AUR77193.1|1360154_1360784_-	arylformamidase	NA	NA	NA	NA	NA
AUR77194.1|1360870_1361548_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77195.1|1361600_1362077_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUR77196.1|1362076_1363054_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
AUR77197.1|1363092_1363737_+	maleylacetoacetate isomerase	NA	NA	NA	NA	NA
AUR77198.1|1364226_1364562_-	cupin	NA	NA	NA	NA	NA
AUR79599.1|1364770_1365775_+	GTP-binding protein	NA	NA	NA	NA	NA
AUR77199.1|1366521_1367433_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77200.1|1368378_1369473_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	30.2	1.2e-20
AUR77201.1|1369469_1371257_+	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
AUR77202.1|1371719_1372226_+	ribosome maturation factor	NA	NA	NA	NA	NA
AUR77203.1|1372222_1373701_+	N utilization substance protein A	NA	NA	NA	NA	NA
AUR77204.1|1373777_1376771_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.1	5.7e-25
AUR77205.1|1376798_1377200_+	ribosome-binding factor A	NA	NA	NA	NA	NA
AUR77206.1|1377244_1377979_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AUR77207.1|1377995_1379816_+	GTP-binding protein TypA	NA	NA	NA	NA	NA
AUR77208.1|1379886_1380612_-	toxin	NA	NA	NA	NA	NA
AUR77209.1|1380608_1381013_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79600.1|1381164_1381737_-	Rossman fold protein, TIGR00730 family	NA	F4YCQ1	Synechococcus_phage	26.8	1.7e-07
AUR77210.1|1381846_1384561_+	DNA polymerase I	NA	B6V2J7	Bacillus_phage	30.7	5.0e-68
AUR77211.1|1384671_1385508_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUR77212.1|1385562_1386351_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUR77213.1|1386384_1388046_-	Na/Pi cotransporter	NA	NA	NA	NA	NA
AUR79601.1|1388213_1389605_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
AUR77214.1|1389742_1390402_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77215.1|1390437_1393263_-	bifunctional glutamine synthetase adenylyltransferase/deadenyltransferase	NA	NA	NA	NA	NA
AUR77216.1|1397036_1398293_-	transcription termination factor Rho	NA	NA	NA	NA	NA
AUR77217.1|1398405_1398831_-	thiol reductase thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.6e-18
AUR77218.1|1398973_1400986_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.6	3.3e-93
AUR77219.1|1400985_1401594_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77220.1|1401611_1403927_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.5	4.5e-78
AUR77221.1|1403929_1405144_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77222.1|1405140_1406091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77223.1|1406859_1407498_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUR79602.1|1408387_1408834_+	glutamate racemase	NA	NA	NA	NA	NA
AUR77224.1|1410381_1411620_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR77225.1|1411619_1412546_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR77226.1|1412648_1413764_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77227.1|1413779_1414730_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77228.1|1415083_1415665_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AUR77229.1|1415661_1416495_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AUR79603.1|1416705_1418019_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77230.1|1418195_1419077_+	glycerol-3-phosphate transporter permease	NA	NA	NA	NA	NA
AUR77231.1|1419096_1419948_+	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
AUR77232.1|1420000_1421089_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AUR77233.1|1421199_1422327_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR79604.1|1422561_1423173_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR77234.1|1423271_1424222_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77235.1|1424320_1425271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77236.1|1425369_1426320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1579445	1638716	4162596	tRNA,transposase	Bacillus_phage(25.0%)	54	NA	NA
AUR77360.1|1579445_1580396_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77361.1|1580513_1581440_+	paraslipin	NA	NA	NA	NA	NA
AUR77362.1|1581505_1582663_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUR77363.1|1582643_1583111_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUR77364.1|1583176_1583611_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUR77365.1|1583600_1583951_+	RnfH family protein	NA	NA	NA	NA	NA
AUR77366.1|1584147_1585302_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR77367.1|1585298_1586471_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR77368.1|1586518_1587412_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUR77369.1|1587457_1587895_+	thioesterase	NA	NA	NA	NA	NA
AUR77370.1|1587954_1588644_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77371.1|1588653_1589604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77372.1|1589702_1590653_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77373.1|1590751_1591714_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUR77374.1|1591997_1593095_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AUR77375.1|1593105_1596348_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUR77376.1|1597369_1598014_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUR77377.1|1598024_1598924_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77378.1|1598971_1600057_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUR77379.1|1600053_1601748_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR77380.1|1601926_1602877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77381.1|1603018_1603321_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77382.1|1603336_1604389_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUR77383.1|1604430_1605492_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AUR77384.1|1605525_1606362_+	lipoprotein	NA	NA	NA	NA	NA
AUR77385.1|1606371_1606914_-	molybdopterin-guanine dinucleotide biosynthesis protein MobB	NA	NA	NA	NA	NA
AUR77386.1|1606927_1608220_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUR77387.1|1608216_1608810_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
AUR77388.1|1608962_1610060_+	Fe-S-binding ATPase	NA	NA	NA	NA	NA
AUR77389.1|1610066_1610627_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77390.1|1610623_1611304_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77391.1|1611327_1613418_+	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AUR77392.1|1613414_1614044_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77393.1|1614195_1614405_+	formate dehydrogenase	NA	NA	NA	NA	NA
AUR77394.1|1614419_1617389_+	formate dehydrogenase	NA	NA	NA	NA	NA
AUR77395.1|1618023_1618257_+	lipoprotein	NA	NA	NA	NA	NA
AUR77396.1|1618269_1619427_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AUR77397.1|1619449_1619824_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77398.1|1619857_1620973_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77399.1|1621872_1622577_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AUR77400.1|1622573_1623392_+	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77401.1|1623675_1625079_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AUR79618.1|1625093_1625744_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUR77402.1|1625825_1626902_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AUR77403.1|1627088_1628219_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUR77404.1|1628269_1629973_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AUR77405.1|1629976_1630789_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUR77406.1|1630933_1632028_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77407.1|1632239_1632869_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77408.1|1632871_1634539_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUR77409.1|1634553_1635210_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AUR77410.1|1635689_1636640_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77411.1|1636671_1637769_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AUR77412.1|1637765_1638716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1680565	1718121	4162596	protease,tRNA,transposase	Streptococcus_virus(25.0%)	33	NA	NA
AUR79619.1|1680565_1681054_+|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AUR77458.1|1681171_1681750_+|protease	protease	protease	NA	NA	NA	NA
AUR77459.1|1681855_1682224_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AUR77460.1|1682322_1683273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77461.1|1683279_1684392_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AUR77462.1|1685078_1686281_+	MFS transporter	NA	NA	NA	NA	NA
AUR77463.1|1686484_1689145_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77464.1|1689157_1692562_+	nuclease	NA	NA	NA	NA	NA
AUR77465.1|1693228_1695454_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AUR77466.1|1695500_1695827_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AUR77467.1|1695877_1696486_+	recombination protein RecR	NA	NA	NA	NA	NA
AUR77468.1|1696584_1697535_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77469.1|1697604_1698369_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AUR77470.1|1698365_1698965_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79620.1|1699068_1699914_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AUR77471.1|1699979_1700606_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AUR77472.1|1700602_1701553_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77473.1|1701539_1701728_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77474.1|1701651_1702773_-	Tat pathway signal protein	NA	NA	NA	NA	NA
AUR77475.1|1702753_1703755_-	aminopeptidase	NA	NA	NA	NA	NA
AUR77476.1|1703860_1705372_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AUR77477.1|1705368_1706673_-	peptidase	NA	NA	NA	NA	NA
AUR77478.1|1706784_1707345_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUR77479.1|1707612_1708167_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AUR77480.1|1708622_1708838_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79621.1|1709092_1711690_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AUR77481.1|1711686_1712874_+	cupin	NA	NA	NA	NA	NA
AUR77482.1|1713530_1714145_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AUR77483.1|1714233_1715361_-	lipoprotein	NA	NA	NA	NA	NA
AUR77484.1|1715372_1716278_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AUR79622.1|1716363_1716720_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AUR79623.1|1716685_1717027_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77485.1|1717170_1718121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1738474	1809634	4162596	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AUR77507.1|1738474_1739425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77508.1|1739446_1740667_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUR77509.1|1740852_1742265_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUR77510.1|1742328_1743396_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUR77511.1|1743392_1744883_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUR79624.1|1744892_1745837_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77512.1|1745996_1746695_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUR77513.1|1746772_1747678_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77514.1|1747697_1748648_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77515.1|1748746_1749541_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUR77516.1|1749545_1751216_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUR77517.1|1751339_1752389_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77518.1|1752710_1753487_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUR77519.1|1753551_1754454_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77520.1|1755747_1756551_+	2,5-diketo-D-gluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUR77521.1|1759244_1759631_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUR77522.1|1759646_1761737_+	DNA helicase RecG	NA	NA	NA	NA	NA
AUR77523.1|1761788_1762742_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUR79625.1|1762756_1763644_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77524.1|1763781_1765308_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AUR79626.1|1765406_1765907_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUR77525.1|1766230_1768186_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUR77526.1|1768353_1770438_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79627.1|1770464_1771211_-	glycosyl transferase	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AUR77527.1|1772105_1772876_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUR77528.1|1772875_1773622_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUR77529.1|1773663_1774833_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUR77530.1|1774864_1776949_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUR77531.1|1776945_1777836_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUR77532.1|1777832_1778930_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AUR77533.1|1778952_1780242_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AUR77534.1|1780253_1781279_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUR77535.1|1781275_1783333_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AUR77536.1|1783346_1784522_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUR77537.1|1784603_1785554_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77538.1|1786106_1787732_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUR79629.1|1787781_1788816_-	haloacid dehalogenase	NA	NA	NA	NA	NA
AUR77539.1|1788818_1790165_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79628.1|1790161_1791676_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77540.1|1791666_1792677_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77541.1|1793150_1794092_-	MoxR protein	NA	NA	NA	NA	NA
AUR77542.1|1794100_1795069_-	AAA family ATPase	NA	NA	NA	NA	NA
AUR77543.1|1796608_1797577_+	phenol degradation protein meta	NA	NA	NA	NA	NA
AUR77544.1|1797754_1798744_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77545.1|1798790_1799549_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR77546.1|1799738_1800476_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUR77547.1|1800574_1801525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77548.1|1801709_1802492_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUR77549.1|1802485_1803187_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUR77550.1|1803426_1804029_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77551.1|1805355_1806306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77552.1|1806302_1807859_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUR77553.1|1807851_1808625_-	oxidoreductase	NA	NA	NA	NA	NA
AUR77554.1|1808683_1809634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1830425	1885691	4162596	tRNA,transposase	Moraxella_phage(14.29%)	51	NA	NA
AUR77569.1|1830425_1831376_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79635.1|1831669_1832392_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUR77570.1|1832830_1834018_-	MFS transporter	NA	NA	NA	NA	NA
AUR77571.1|1834021_1834402_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR77572.1|1836121_1837093_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77573.1|1837106_1837820_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUR77574.1|1837824_1838742_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77575.1|1838848_1839145_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77576.1|1839243_1840194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77577.1|1841352_1844286_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUR77578.1|1844285_1844630_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUR77579.1|1844626_1846255_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUR77580.1|1846251_1846731_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUR77581.1|1846727_1847012_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUR77582.1|1847008_1847335_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUR77583.1|1847490_1848441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77584.1|1848484_1849027_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77585.1|1849124_1849973_+	hydrolase	NA	NA	NA	NA	NA
AUR79636.1|1850022_1850472_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUR77586.1|1850468_1851470_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AUR77587.1|1851482_1852277_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR79637.1|1852325_1854221_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUR77588.1|1854223_1854847_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77589.1|1854973_1856098_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77590.1|1856415_1858083_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AUR77591.1|1858238_1859015_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUR77592.1|1859099_1860098_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77593.1|1860094_1860868_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR77594.1|1861852_1862803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77595.1|1862840_1863428_+	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUR77596.1|1863445_1863829_-	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUR77597.1|1865188_1866481_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUR77598.1|1866615_1867656_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUR79638.1|1867753_1868770_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR77599.1|1869037_1869685_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUR77600.1|1869810_1870569_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUR79639.1|1870694_1871333_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	47.4	5.6e-31
AUR77601.1|1871350_1872235_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUR77602.1|1872231_1873011_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AUR77603.1|1873115_1873715_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77604.1|1874003_1874756_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77605.1|1874874_1876275_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUR77606.1|1876298_1876697_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUR77607.1|1876872_1877073_+	heavy metal transporter	NA	NA	NA	NA	NA
AUR77608.1|1877211_1877940_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUR77609.1|1878073_1879489_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUR77610.1|1879492_1880356_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUR77611.1|1880368_1881118_-	glycerophosphoryl diester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUR77612.1|1881300_1883316_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUR79640.1|1883297_1883846_-	arylesterase	NA	NA	NA	NA	NA
AUR77613.1|1884740_1885691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1899192	1949561	4162596	protease,tRNA,transposase	Methanothermobacter_phage(10.0%)	43	NA	NA
AUR77625.1|1899192_1900143_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77626.1|1900139_1900613_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR77627.1|1900774_1901713_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77628.1|1901714_1902923_-	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUR77629.1|1903027_1903534_-	signal peptidase II	NA	NA	NA	NA	NA
AUR77630.1|1903536_1906398_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUR77631.1|1906387_1907353_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
AUR77632.1|1907412_1909407_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AUR77633.1|1909505_1910456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77634.1|1910554_1911505_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77635.1|1911501_1911876_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77636.1|1912137_1913346_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AUR77637.1|1913342_1915643_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AUR77638.1|1915695_1918308_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AUR77639.1|1918667_1920593_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AUR77640.1|1920589_1921486_-	ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AUR77641.1|1921492_1922632_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AUR77642.1|1922631_1923453_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AUR77643.1|1925023_1925353_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77644.1|1925735_1926992_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR77645.1|1927066_1927348_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77646.1|1927389_1927710_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77647.1|1928016_1928220_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AUR77648.1|1928303_1928870_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77649.1|1929527_1930106_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AUR77650.1|1930284_1931595_+	trigger factor	NA	NA	NA	NA	NA
AUR77651.1|1931597_1932251_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AUR77652.1|1932355_1933660_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AUR77653.1|1933848_1936302_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AUR77654.1|1936425_1937376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77655.1|1937603_1938827_+	CoA transferase	NA	NA	NA	NA	NA
AUR77656.1|1938892_1939864_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77657.1|1939930_1940332_+	oxidoreductase	NA	NA	NA	NA	NA
AUR77658.1|1940345_1941149_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR77659.1|1941145_1941577_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77660.1|1941573_1942731_+	thiolase	NA	NA	NA	NA	NA
AUR77661.1|1942752_1943529_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUR77662.1|1945693_1946410_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUR77663.1|1946402_1947044_+	succinyl-CoA--3-ketoacid-CoA transferase	NA	NA	NA	NA	NA
AUR77664.1|1947078_1947810_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77665.1|1947827_1948040_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77666.1|1948345_1948624_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77667.1|1948610_1949561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1962754	2025586	4162596	tRNA,transposase	Planktothrix_phage(40.0%)	52	NA	NA
AUR77683.1|1962754_1963705_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77684.1|1963829_1964639_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR77685.1|1964839_1965790_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77686.1|1965888_1966839_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77687.1|1968112_1969330_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77688.1|1970386_1971289_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77689.1|1971365_1972238_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUR77690.1|1972368_1972737_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUR77691.1|1972794_1973841_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUR77692.1|1974036_1975293_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUR77693.1|1975297_1976635_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77694.1|1976784_1977741_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77695.1|1979213_1979564_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77696.1|1979611_1981186_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77697.1|1981238_1982183_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUR77698.1|1982200_1983031_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUR77699.1|1983023_1984658_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUR77700.1|1984654_1986010_+	amidase	NA	NA	NA	NA	NA
AUR77701.1|1986916_1988494_+	lipoprotein	NA	NA	NA	NA	NA
AUR77702.1|1988497_1989772_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79641.1|1989869_1990244_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77703.1|1991959_1993093_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUR77704.1|1993130_1993736_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUR77705.1|1993732_1994551_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77706.1|1994622_1997247_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUR77707.1|1997233_1997488_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77708.1|1997554_1998136_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77709.1|1998439_1998700_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUR77710.1|1998865_1999489_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUR77711.1|1999488_2000262_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUR77712.1|2000258_2001467_-	class V aminotransferase	NA	NA	NA	NA	NA
AUR77713.1|2001492_2001966_-	hypothetical protein	NA	NA	NA	NA	NA
AUR77714.1|2002039_2002990_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77715.1|2003088_2004039_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR77716.1|2004137_2005154_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
AUR77717.1|2005332_2006367_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUR77718.1|2006363_2006990_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUR77719.1|2006986_2008039_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUR77720.1|2008088_2008859_+	DNAase	NA	NA	NA	NA	NA
AUR77721.1|2008909_2009746_+	hypothetical protein	NA	NA	NA	NA	NA
AUR77722.1|2009941_2010682_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR77723.1|2010756_2011500_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77724.1|2012161_2012935_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUR79642.1|2014072_2015362_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUR77725.1|2016972_2018220_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUR77726.1|2018229_2019939_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUR77727.1|2019935_2020874_-	CoA ester lyase	NA	NA	NA	NA	NA
AUR77728.1|2020870_2022154_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUR77729.1|2022157_2022640_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUR77730.1|2022640_2023627_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR77731.1|2023799_2024519_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR77732.1|2024635_2025586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2646124	2710339	4162596	protease,tRNA,transposase	Salmonella_phage(16.67%)	60	NA	NA
AUR78229.1|2646124_2647612_-|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
AUR78230.1|2647649_2648711_-	siderophore-interacting protein	NA	NA	NA	NA	NA
AUR78231.1|2648707_2649208_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78232.1|2649220_2649820_-	RNA polymerase sigma factor	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AUR78233.1|2649816_2650317_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78234.1|2650318_2651548_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AUR79676.1|2651737_2651977_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AUR78235.1|2652159_2652912_-	beta-ketoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AUR78236.1|2652913_2653849_-	malonyl CoA-acyl carrier protein transacylase	NA	NA	NA	NA	NA
AUR78237.1|2653930_2654917_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AUR78238.1|2654916_2655975_-	phosphate acyltransferase	NA	NA	NA	NA	NA
AUR78239.1|2656031_2656214_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AUR79677.1|2656265_2656859_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78240.1|2656967_2657567_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AUR78241.1|2657563_2658274_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUR78242.1|2658275_2659103_+	hydrolase	NA	NA	NA	NA	NA
AUR78243.1|2660919_2662161_-	MFS transporter	NA	NA	NA	NA	NA
AUR78244.1|2662172_2662946_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUR78245.1|2662972_2663923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78246.1|2664021_2664804_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUR78247.1|2664892_2666119_-	transporter	NA	NA	NA	NA	NA
AUR78248.1|2666844_2668230_+	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AUR78249.1|2668248_2668854_+	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUR78250.1|2668850_2670707_+	IucA/IucC family protein	NA	NA	NA	NA	NA
AUR78251.1|2670703_2671504_+	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUR78252.1|2671518_2672712_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUR78253.1|2672779_2673754_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUR78254.1|2673876_2675100_+	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUR78255.1|2675210_2677415_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AUR78256.1|2677709_2678369_+	antibiotic resistance protein	NA	NA	NA	NA	NA
AUR78257.1|2678376_2678583_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78258.1|2678921_2679677_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUR78259.1|2679692_2679854_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78260.1|2679947_2680463_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUR78261.1|2680735_2681053_+	virulence factor	NA	NA	NA	NA	NA
AUR78262.1|2681240_2681489_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78263.1|2681767_2683123_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUR78264.1|2683169_2684549_-	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUR78265.1|2684611_2685244_-	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUR78266.1|2685243_2687613_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUR78267.1|2687645_2688605_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUR78268.1|2688591_2689278_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUR78269.1|2689274_2689607_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUR78270.1|2689722_2690673_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78271.1|2690669_2692736_-	cation acetate symporter	NA	NA	NA	NA	NA
AUR78272.1|2692735_2693008_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78273.1|2693702_2693792_+	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUR78274.1|2693791_2695576_+	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AUR78275.1|2695599_2697765_+	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUR78276.1|2697775_2698375_+	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUR78277.1|2701195_2701891_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR78278.1|2701899_2702850_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78279.1|2702948_2704190_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78280.1|2704339_2705320_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78281.1|2705518_2706775_-	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUR78282.1|2706977_2707403_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78283.1|2707444_2707807_-	cytochrome	NA	NA	NA	NA	NA
AUR78284.1|2707819_2708173_-	cytochrome C	NA	NA	NA	NA	NA
AUR78285.1|2708339_2709290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78286.1|2709388_2710339_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2855805	2916954	4162596	tRNA,transposase	Bacillus_virus(20.0%)	48	NA	NA
AUR78417.1|2855805_2856756_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78418.1|2857171_2859808_-	GTP-binding protein	NA	NA	NA	NA	NA
AUR78419.1|2859804_2860929_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AUR78420.1|2860925_2862308_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUR78421.1|2862443_2862911_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR78422.1|2863032_2863701_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78423.1|2863830_2864976_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78424.1|2864977_2866708_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78425.1|2866825_2867134_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78426.1|2867146_2867959_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR79688.1|2868839_2869928_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
AUR79689.1|2871130_2871919_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
AUR78427.1|2871958_2873563_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUR78428.1|2873643_2874384_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78429.1|2874391_2874886_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79690.1|2875258_2876278_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78430.1|2876274_2877657_-	hypothetical protein	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AUR78431.1|2877689_2878550_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78432.1|2879631_2880435_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78433.1|2880493_2880931_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78434.1|2881021_2881993_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78435.1|2882031_2882976_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AUR78436.1|2883071_2883881_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78437.1|2883957_2884332_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78438.1|2884438_2885131_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78439.1|2885123_2885540_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUR78440.1|2885650_2886283_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AUR78441.1|2886311_2886755_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AUR78442.1|2886776_2887868_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78443.1|2887922_2888723_-	class II aldolase	NA	NA	NA	NA	NA
AUR78444.1|2888858_2889479_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUR78445.1|2889618_2890092_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78446.1|2891231_2892182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78447.1|2892178_2899840_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AUR78448.1|2900080_2904127_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AUR78449.1|2904439_2905021_+	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUR78450.1|2905017_2906316_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUR78451.1|2906395_2907424_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUR78452.1|2907347_2907698_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78453.1|2907684_2908635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78454.1|2908733_2909684_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78455.1|2909680_2910631_-|transposase	transposase	transposase	NA	NA	NA	NA
AUR78456.1|2910947_2911553_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AUR78457.1|2911606_2912920_-	phenylacetate-CoA ligase	NA	NA	NA	NA	NA
AUR78458.1|2912994_2913465_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUR78459.1|2913464_2914253_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUR78460.1|2914263_2915916_-	oxidoreductase	NA	NA	NA	NA	NA
AUR78461.1|2916003_2916954_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2940879	3005664	4162596	protease,transposase	Pelagibacter_phage(16.67%)	48	NA	NA
AUR78479.1|2940879_2941830_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78480.1|2941964_2943071_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78481.1|2943081_2944179_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AUR78482.1|2944323_2945529_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUR78483.1|2945535_2946057_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA	NA
AUR78484.1|2946053_2946545_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUR78485.1|2946541_2946793_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUR78486.1|2946773_2947259_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AUR78487.1|2947394_2950856_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78488.1|2950852_2951758_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUR78489.1|2951767_2952199_-	lipoprotein	NA	NA	NA	NA	NA
AUR79693.1|2952445_2952949_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUR78490.1|2952960_2954427_+	MFS transporter	NA	NA	NA	NA	NA
AUR78491.1|2954501_2955377_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79694.1|2955373_2956381_-	biotin synthase	NA	NA	NA	NA	NA
AUR78492.1|2956848_2957154_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78493.1|2957244_2957835_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR79695.1|2958025_2959042_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR78494.1|2959233_2961570_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUR78495.1|2961652_2962087_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78496.1|2963131_2963926_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AUR78497.1|2963957_2964662_-	oxidoreductase	NA	NA	NA	NA	NA
AUR78498.1|2964736_2965537_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78499.1|2965533_2965941_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AUR78500.1|2965937_2966579_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AUR78501.1|2966571_2968593_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUR78502.1|2969832_2971164_+	MFS transporter	NA	NA	NA	NA	NA
AUR78503.1|2971160_2972111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78504.1|2973817_2974123_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78505.1|2974791_2975130_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR78506.1|2976458_2978738_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUR78507.1|2978715_2979420_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78508.1|2979682_2980285_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78509.1|2980381_2981671_+	MFS transporter	NA	NA	NA	NA	NA
AUR78510.1|2981728_2982460_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUR78511.1|2982456_2983260_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUR78512.1|2983256_2984345_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUR78513.1|2984341_2985271_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR78514.1|2985419_2986565_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78515.1|2986586_2987537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78516.1|2987867_2991689_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUR78517.1|2991845_2992514_-	lipoprotein	NA	NA	NA	NA	NA
AUR78518.1|2992518_2994192_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUR78519.1|2994210_2995530_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUR78520.1|2995534_2997886_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AUR79696.1|2997905_3000074_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUR78521.1|3000070_3005260_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUR78522.1|3005349_3005664_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
>prophage 23
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3011894	3068992	4162596	transposase	Vibrio_phage(20.0%)	53	NA	NA
AUR78529.1|3011894_3012845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78530.1|3013125_3013746_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUR78531.1|3013742_3014156_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUR78532.1|3014152_3015196_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUR78533.1|3015251_3015440_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78534.1|3015449_3016214_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUR78535.1|3016304_3016961_+	adenylate kinase	NA	NA	NA	NA	NA
AUR78536.1|3017052_3017811_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR78537.1|3017836_3019438_+	lipid II flippase MurJ	NA	NA	NA	NA	NA
AUR78538.1|3019638_3020643_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUR78539.1|3020743_3021007_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUR78540.1|3021124_3021901_-	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
AUR78541.1|3022491_3023442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78542.1|3025825_3026938_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUR78543.1|3026994_3027945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78544.1|3028153_3028375_-	lipoprotein	NA	NA	NA	NA	NA
AUR78545.1|3028588_3029995_-	threonine synthase	NA	NA	NA	NA	NA
AUR78546.1|3029991_3031296_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
AUR78547.1|3031292_3032480_-	aminotransferase	NA	NA	NA	NA	NA
AUR78548.1|3032696_3033149_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78549.1|3033151_3033616_+	peroxiredoxin	NA	NA	NA	NA	NA
AUR78550.1|3033695_3035375_+	phosphate starvation-inducible protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.9	1.5e-70
AUR78551.1|3035479_3036457_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUR78552.1|3036536_3037505_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
AUR78553.1|3037525_3038899_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AUR78554.1|3038895_3039732_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78555.1|3039848_3040304_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
AUR78556.1|3040319_3040592_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AUR78557.1|3040684_3041008_-	primosomal replication protein N	NA	NA	NA	NA	NA
AUR78558.1|3041055_3041436_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
AUR78559.1|3041655_3042453_-	GTP cyclohydrolase I FolE	NA	NA	NA	NA	NA
AUR78560.1|3042609_3044472_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUR78561.1|3044521_3045433_-	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
AUR78562.1|3045437_3045704_-	exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA	NA
AUR78563.1|3045790_3046660_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR78564.1|3046795_3047761_+	MFS transporter	NA	NA	NA	NA	NA
AUR78565.1|3047931_3048942_+	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AUR78566.1|3048948_3050241_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUR78567.1|3050324_3051188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78568.1|3051383_3052856_-	magnesium transporter	NA	NA	NA	NA	NA
AUR78569.1|3052866_3053277_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUR78570.1|3053340_3054387_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78571.1|3054493_3055372_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR78572.1|3055385_3056582_-	hydrolase	NA	NA	NA	NA	NA
AUR78573.1|3056643_3058335_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUR78574.1|3058331_3059282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78575.1|3059268_3059514_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78576.1|3059402_3060299_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUR78577.1|3062576_3064802_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUR78578.1|3064966_3066055_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUR78579.1|3066011_3066665_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUR78580.1|3066712_3067510_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78581.1|3068041_3068992_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3081002	3132557	4162596	tRNA,transposase	Ostreococcus_lucimarinus_virus(16.67%)	48	NA	NA
AUR78593.1|3081002_3082241_+|transposase	transposase	transposase	NA	NA	NA	NA
AUR78594.1|3082282_3083545_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78595.1|3083551_3084304_+	DNA-binding protein	NA	NA	NA	NA	NA
AUR78596.1|3084355_3084541_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79699.1|3084816_3085281_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUR78597.1|3085312_3085972_+	hydrolase	NA	NA	NA	NA	NA
AUR78598.1|3086116_3088225_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78599.1|3088226_3088847_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR79700.1|3088950_3089691_+	oxidoreductase	NA	NA	NA	NA	NA
AUR78600.1|3090825_3091950_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78601.1|3091995_3092364_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78602.1|3092605_3093556_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78603.1|3094591_3095134_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78604.1|3095338_3095533_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78605.1|3095519_3096470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78606.1|3096466_3097432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78607.1|3097501_3098338_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUR78608.1|3098814_3099960_+	porin	NA	NA	NA	NA	NA
AUR78609.1|3100021_3100972_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78610.1|3101164_3101947_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUR79701.1|3101960_3102710_-	short-chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AUR79702.1|3102737_3104084_-	MFS transporter	NA	NA	NA	NA	NA
AUR78611.1|3104109_3105039_-	acetylxylan esterase	NA	NA	NA	NA	NA
AUR78612.1|3105154_3106060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78613.1|3106077_3107277_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AUR78614.1|3107349_3108042_-	hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AUR78615.1|3108090_3110517_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
AUR78616.1|3110561_3111512_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78617.1|3111727_3112096_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78618.1|3112381_3113308_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78619.1|3113351_3114362_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUR78620.1|3114358_3114793_+	thioesterase	NA	NA	NA	NA	NA
AUR78621.1|3115918_3116707_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AUR78622.1|3116716_3117499_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR78623.1|3117502_3118594_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78624.1|3118699_3120175_+	acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AUR78625.1|3120316_3120865_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUR78626.1|3120880_3121342_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR78627.1|3121442_3122432_-	MFS transporter	NA	NA	NA	NA	NA
AUR78628.1|3122730_3123432_+	riboflavin synthase	NA	NA	NA	NA	NA
AUR78629.1|3123470_3124844_-	amidase	NA	NA	NA	NA	NA
AUR78630.1|3124882_3126169_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78631.1|3127055_3127958_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78632.1|3127905_3129126_-	MFS transporter	NA	NA	NA	NA	NA
AUR78633.1|3129122_3129632_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
AUR78634.1|3129621_3130317_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78635.1|3130387_3131257_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78636.1|3131606_3132557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3205879	3269714	4162596	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	58	NA	NA
AUR78692.1|3205879_3206830_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79708.1|3206975_3208100_-	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
AUR78693.1|3208305_3208869_+	hydrolase	NA	NA	NA	NA	NA
AUR78694.1|3209863_3210346_-	NrdR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78695.1|3210503_3211751_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
AUR78696.1|3211971_3212628_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AUR78697.1|3212663_3213893_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
AUR78698.1|3214160_3215111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78699.1|3215202_3216618_+	metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
AUR78700.1|3216623_3217760_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
AUR78701.1|3217829_3218201_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
AUR78702.1|3218288_3219035_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78703.1|3219071_3220136_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AUR78704.1|3220324_3220717_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AUR79709.1|3220726_3221155_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AUR78705.1|3221450_3222548_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78706.1|3222889_3224254_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AUR78707.1|3224312_3224864_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78708.1|3224877_3225552_+	carboxylesterase	NA	NA	NA	NA	NA
AUR78709.1|3226808_3227618_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
AUR78710.1|3227620_3228457_+	ABC transporter permease	NA	NA	NA	NA	NA
AUR78711.1|3228471_3229164_+	hydrolase	NA	NA	NA	NA	NA
AUR78712.1|3229175_3229565_-	glyoxalase	NA	NA	NA	NA	NA
AUR78713.1|3229670_3231059_-	ATP-dependent RNA helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
AUR78714.1|3231175_3232672_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78715.1|3232968_3233643_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78716.1|3233536_3233755_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78717.1|3233741_3234692_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78718.1|3234688_3237148_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUR79710.1|3237244_3238690_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AUR78719.1|3238693_3239881_-	MFS transporter	NA	NA	NA	NA	NA
AUR78720.1|3239949_3240459_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78721.1|3240660_3241113_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUR78722.1|3241285_3241543_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78723.1|3241674_3244737_+	pyruvate ferredoxin oxidoreductase	NA	NA	NA	NA	NA
AUR78724.1|3245042_3247970_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
AUR78725.1|3247991_3249188_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
AUR78726.1|3249505_3250033_+	histone	NA	NA	NA	NA	NA
AUR78727.1|3250171_3250747_+	YggT family protein	NA	NA	NA	NA	NA
AUR78728.1|3250754_3252218_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
AUR78729.1|3252228_3253356_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
AUR78730.1|3253363_3253489_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79711.1|3253485_3254613_-	teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AUR78731.1|3254638_3254878_-	acyl carrier protein	NA	NA	NA	NA	NA
AUR78732.1|3255158_3255662_-	lipoprotein	NA	NA	NA	NA	NA
AUR79712.1|3255834_3256776_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
AUR78733.1|3256787_3257885_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78734.1|3258850_3260197_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUR78735.1|3260206_3260656_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
AUR78736.1|3260745_3261180_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AUR78737.1|3261258_3261807_-	thioredoxin	NA	NA	NA	NA	NA
AUR78738.1|3261889_3263260_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AUR78739.1|3263270_3263864_+	esterase	NA	NA	NA	NA	NA
AUR78740.1|3263935_3265819_+	ribonuclease II	NA	NA	NA	NA	NA
AUR78741.1|3265856_3266756_+	energy transducer TonB	NA	NA	NA	NA	NA
AUR78742.1|3266752_3267616_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AUR78743.1|3267714_3268665_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78744.1|3268763_3269714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3317856	3365470	4162596	transposase	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
AUR78778.1|3317856_3318807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78779.1|3319251_3319563_-	cell division protein ZapA	NA	NA	NA	NA	NA
AUR78780.1|3319562_3320093_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78781.1|3320255_3321206_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78782.1|3321495_3321960_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AUR78783.1|3321974_3323480_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78784.1|3323733_3325341_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
AUR78785.1|3325396_3326302_+	oxidoreductase	NA	NA	NA	NA	NA
AUR79716.1|3326350_3326854_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78786.1|3326742_3327693_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78787.1|3327831_3328584_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AUR78788.1|3328822_3330547_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AUR78789.1|3330566_3331826_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUR78790.1|3331840_3332935_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AUR78791.1|3332931_3335058_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AUR78792.1|3335070_3335751_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AUR79717.1|3336028_3337402_+	MFS transporter	NA	NA	NA	NA	NA
AUR78793.1|3337403_3338423_+	acetylpolyamine amidohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AUR78794.1|3338486_3339458_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR78795.1|3339522_3340473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78796.1|3340571_3341414_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AUR78797.1|3341413_3341749_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78798.1|3341819_3343238_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AUR78799.1|3343517_3344558_-	alpha-mannosyltransferase	NA	NA	NA	NA	NA
AUR78800.1|3344637_3344889_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AUR78801.1|3344999_3346163_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
AUR78802.1|3346446_3347301_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AUR78803.1|3347297_3348188_+	acyltransferase	NA	NA	NA	NA	NA
AUR78804.1|3348230_3349142_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AUR78805.1|3349168_3349861_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78806.1|3349875_3350856_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AUR78807.1|3350868_3353010_-	outer membrane protein	NA	NA	NA	NA	NA
AUR78808.1|3353058_3354027_-	nickel transporter	NA	NA	NA	NA	NA
AUR79718.1|3354017_3354641_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78809.1|3354646_3355582_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78810.1|3355578_3356475_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR78811.1|3356471_3357194_-	ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AUR78812.1|3357184_3357385_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78813.1|3357522_3358026_+	transcriptional repressor	NA	NA	NA	NA	NA
AUR78814.1|3358302_3359418_+	GTP-binding protein	NA	NA	NA	NA	NA
AUR78815.1|3359560_3360025_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AUR78816.1|3360172_3360712_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AUR78817.1|3360733_3362068_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AUR79719.1|3362081_3362387_-	RND transporter	NA	NA	NA	NA	NA
AUR78818.1|3362811_3363372_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AUR78819.1|3363470_3364421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78820.1|3364519_3365470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3375397	3401883	4162596	protease,tRNA,transposase,integrase	Klosneuvirus(33.33%)	25	3384679:3384697	3404567:3404585
AUR78828.1|3375397_3376348_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78829.1|3376875_3377649_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78830.1|3377781_3378792_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUR78831.1|3378943_3380599_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
AUR78832.1|3380653_3380995_-	cupin	NA	NA	NA	NA	NA
AUR78833.1|3381008_3382448_-	amine oxidase	NA	NA	NA	NA	NA
AUR78834.1|3382580_3383396_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78835.1|3383414_3383603_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78836.1|3383589_3384540_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3384679:3384697	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUR78837.1|3384687_3385245_+|integrase	integrase	integrase	NA	NA	NA	NA
AUR78838.1|3385323_3385620_-	DNA helicase UvrD	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AUR79723.1|3385689_3386760_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79724.1|3386670_3386916_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78839.1|3387144_3387402_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78840.1|3387916_3388867_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78841.1|3388853_3389054_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78842.1|3389050_3390262_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUR78843.1|3390277_3393229_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUR78844.1|3393230_3396350_-	restriction endonuclease	NA	NA	NA	NA	NA
AUR78845.1|3396346_3396490_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AUR78846.1|3396497_3397544_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUR78847.1|3397885_3399013_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUR78848.1|3399292_3400384_-	GTP-binding protein YchF	NA	NA	NA	NA	NA
AUR78849.1|3400456_3401239_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUR78850.1|3401235_3401883_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3404567:3404585	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 28
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3450770	3571046	4162596	tRNA,transposase	Acinetobacter_phage(20.0%)	104	NA	NA
AUR78889.1|3450770_3451721_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78890.1|3452125_3452770_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AUR78891.1|3452794_3453379_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AUR78892.1|3453479_3454097_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AUR78893.1|3454099_3455815_-	urease subunit alpha	NA	NA	NA	NA	NA
AUR78894.1|3455811_3456120_-	urease subunit beta	NA	NA	NA	NA	NA
AUR78895.1|3456136_3456772_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AUR78896.1|3456798_3457101_-	urease subunit gamma	NA	NA	NA	NA	NA
AUR78897.1|3457201_3458056_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AUR78898.1|3458637_3458910_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78899.1|3459327_3459735_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUR78900.1|3460104_3460899_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78901.1|3460999_3462235_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUR78902.1|3462303_3463320_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUR78903.1|3463316_3464708_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78904.1|3464704_3465901_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78905.1|3465897_3467436_-	SpoVR family protein	NA	NA	NA	NA	NA
AUR78906.1|3467432_3468692_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78907.1|3470632_3471583_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78908.1|3471681_3472632_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78909.1|3473398_3474493_-	CoA transferase	NA	NA	NA	NA	NA
AUR78910.1|3474485_3475820_-	CoA ligase	NA	NA	NA	NA	NA
AUR78911.1|3475773_3476457_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78912.1|3476482_3477646_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR78913.1|3477642_3478644_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR78914.1|3478643_3479516_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUR78915.1|3479512_3480262_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUR78916.1|3480258_3481050_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUR78917.1|3481046_3482186_-	ABC transporter	NA	NA	NA	NA	NA
AUR78918.1|3482494_3483247_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR78919.1|3483280_3484063_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR78920.1|3484066_3484456_+	DNA-binding protein	NA	NA	NA	NA	NA
AUR78921.1|3485595_3486459_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR78922.1|3486494_3487583_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78923.1|3487579_3488530_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78924.1|3488516_3488885_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78925.1|3488883_3491862_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78926.1|3492028_3492544_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78927.1|3492556_3492805_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78928.1|3492788_3493667_+	fatty acid desaturase	NA	NA	NA	NA	NA
AUR78929.1|3495615_3496566_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78930.1|3496562_3497030_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUR78931.1|3497072_3497843_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUR78932.1|3497863_3498664_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUR78933.1|3498674_3500084_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUR78934.1|3500178_3500964_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUR79725.1|3501203_3502220_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR78935.1|3502327_3502720_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUR78936.1|3502857_3503538_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78937.1|3503542_3504541_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78938.1|3504609_3505560_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78939.1|3507064_3507766_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AUR78940.1|3507765_3509190_+	ATP-binding protein	NA	NA	NA	NA	NA
AUR78941.1|3509206_3510262_-	cytochrome oxidase	NA	NA	NA	NA	NA
AUR78942.1|3510258_3511599_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUR78943.1|3511714_3513478_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUR78944.1|3513589_3514468_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUR78945.1|3514580_3515396_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUR78946.1|3515399_3515651_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AUR79726.1|3515735_3516752_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR78947.1|3517082_3517304_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78948.1|3519664_3520582_-	EamA family transporter	NA	NA	NA	NA	NA
AUR78949.1|3520694_3521210_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78950.1|3521079_3522288_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR78951.1|3522367_3523939_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78952.1|3524056_3524992_-	glycosyl transferase	NA	NA	NA	NA	NA
AUR78953.1|3525180_3526125_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUR78954.1|3526193_3526409_-	hypothetical protein	NA	NA	NA	NA	NA
AUR78955.1|3526692_3532410_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUR78956.1|3532415_3533543_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUR78957.1|3533598_3534225_+	aminotransferase	NA	NA	NA	NA	NA
AUR79727.1|3534496_3535513_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUR78958.1|3535643_3536354_-	oxidoreductase	NA	NA	NA	NA	NA
AUR79728.1|3536350_3537340_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR78959.1|3537471_3539067_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUR78960.1|3539069_3539807_+	transcriptional regulator	NA	NA	NA	NA	NA
AUR78961.1|3539962_3540835_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUR78962.1|3541103_3542324_+	MFS transporter	NA	NA	NA	NA	NA
AUR78963.1|3542320_3542980_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUR78964.1|3543051_3543684_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUR78965.1|3543713_3544232_+	flavin reductase	NA	NA	NA	NA	NA
AUR78966.1|3544242_3545352_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR78967.1|3545398_3546253_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUR78968.1|3546254_3547157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR78969.1|3548379_3549330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78970.1|3551083_3552073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78971.1|3552248_3553037_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUR78972.1|3553033_3554065_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUR78973.1|3554083_3554647_-	glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUR78974.1|3554702_3556223_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AUR78975.1|3556486_3557191_-	phosphoglycolate phosphatase, bacterial	NA	NA	NA	NA	NA
AUR78976.1|3557198_3557936_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUR78977.1|3558041_3558416_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUR78978.1|3558458_3559748_+	hypothetical protein	NA	NA	NA	NA	NA
AUR78979.1|3559744_3560914_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUR78980.1|3560910_3561750_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AUR78981.1|3561809_3562745_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUR78982.1|3562757_3563708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR78983.1|3563806_3564769_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUR78984.1|3564800_3565160_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUR78985.1|3565284_3566187_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUR78986.1|3566188_3567961_-	peptidase M61	NA	NA	NA	NA	NA
AUR78987.1|3567995_3568772_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR78988.1|3570095_3571046_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3585984	3634746	4162596	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AUR79001.1|3585984_3586935_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79002.1|3587063_3588197_-	peptidase	NA	NA	NA	NA	NA
AUR79003.1|3588240_3589146_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR79004.1|3589148_3590849_-	hypothetical protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AUR79005.1|3590845_3591766_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUR79006.1|3591773_3592751_-	ABC transporter permease	NA	NA	NA	NA	NA
AUR79007.1|3592809_3593844_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUR79008.1|3595818_3596055_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79009.1|3596181_3597045_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUR79010.1|3597133_3597955_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR79011.1|3598034_3598772_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR79012.1|3598768_3599761_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AUR79013.1|3599874_3600537_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUR79014.1|3600581_3601730_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUR79015.1|3604053_3605004_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79016.1|3605344_3606295_+|transposase	transposase	transposase	NA	NA	NA	NA
AUR79017.1|3606393_3607344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79018.1|3607442_3608393_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79019.1|3608689_3609187_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79020.1|3609229_3611005_+	copper oxidase	NA	NA	NA	NA	NA
AUR79731.1|3611051_3611879_+	copper resistance protein	NA	NA	NA	NA	NA
AUR79021.1|3611885_3612620_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUR79022.1|3613789_3614584_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUR79023.1|3614873_3615464_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUR79024.1|3615497_3616826_-	amidase	NA	NA	NA	NA	NA
AUR79025.1|3616900_3618046_-	transporter	NA	NA	NA	NA	NA
AUR79026.1|3618157_3619108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79027.1|3619839_3620217_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AUR79028.1|3620201_3620903_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79029.1|3621046_3621739_-	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AUR79030.1|3621738_3622842_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AUR79031.1|3622951_3625324_+	LPS biosynthesis protein	NA	NA	NA	NA	NA
AUR79032.1|3625320_3626880_+	chaperone SurA	NA	NA	NA	NA	NA
AUR79033.1|3626904_3627702_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AUR79034.1|3627733_3628879_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AUR79035.1|3628983_3630426_+	pyruvate kinase	NA	NA	NA	NA	NA
AUR79036.1|3630428_3631658_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79037.1|3633795_3634746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3644037	3692687	4162596	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(19.05%)	58	NA	NA
AUR79049.1|3644037_3645768_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUR79050.1|3645833_3646406_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUR79051.1|3646386_3647073_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUR79052.1|3647428_3648100_+	DUF159 family protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUR79053.1|3648106_3648307_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79054.1|3648428_3648650_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79055.1|3648649_3648931_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79056.1|3648927_3649461_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79057.1|3649442_3649994_-	lysozyme	NA	NA	NA	NA	NA
AUR79058.1|3649972_3650215_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79059.1|3650219_3651032_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79060.1|3651031_3651295_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79061.1|3651513_3651930_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79062.1|3651934_3655891_-	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUR79063.1|3655883_3656273_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUR79064.1|3656269_3656803_-	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUR79065.1|3656870_3657230_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79066.1|3657239_3659852_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUR79067.1|3659877_3660168_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUR79068.1|3660185_3660515_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUR79069.1|3660524_3661043_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUR79070.1|3661297_3661798_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUR79071.1|3661805_3662228_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79072.1|3662224_3662623_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUR79073.1|3662619_3663015_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUR79074.1|3663014_3663215_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79075.1|3663216_3663699_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUR79076.1|3663761_3664013_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79077.1|3664687_3665638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79078.1|3665736_3666546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79079.1|3667115_3667718_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUR79080.1|3667840_3668083_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUR79732.1|3668088_3669144_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AUR79081.1|3669172_3670591_-	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUR79082.1|3670593_3671871_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUR79083.1|3671857_3672343_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUR79084.1|3672982_3673933_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79085.1|3674186_3674885_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79086.1|3674877_3675198_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79733.1|3675677_3676289_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUR79087.1|3676354_3676567_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79088.1|3676818_3677769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79089.1|3677867_3678668_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79090.1|3678729_3679113_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUR79091.1|3679124_3680558_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUR79092.1|3680764_3681094_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79734.1|3681096_3681765_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79093.1|3682028_3682949_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUR79094.1|3682995_3683208_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AUR79095.1|3683230_3683653_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUR79096.1|3683669_3684770_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUR79097.1|3684866_3686384_-	peptidase	NA	NA	NA	NA	NA
AUR79098.1|3686459_3687299_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUR79099.1|3687320_3688202_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79100.1|3688283_3689378_-	porin	NA	NA	NA	NA	NA
AUR79101.1|3689671_3690622_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79735.1|3690696_3691638_+|transposase	transposase	transposase	NA	NA	NA	NA
AUR79102.1|3691736_3692687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3765783	3806690	4162596	transposase	uncultured_virus(25.0%)	38	NA	NA
AUR79164.1|3765783_3766734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79165.1|3767126_3768134_-	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUR79166.1|3768282_3769110_-	transcriptional regulator	NA	NA	NA	NA	NA
AUR79167.1|3769115_3769913_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUR79168.1|3770058_3771234_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	M4QPK3	Synechococcus_phage	40.3	4.5e-34
AUR79169.1|3771247_3771769_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2I2L4Y7	Orpheovirus	34.5	1.8e-11
AUR79170.1|3771776_3772241_+	N utilization substance protein B	NA	NA	NA	NA	NA
AUR79171.1|3772280_3773297_+	thiamine-monophosphate kinase	NA	NA	NA	NA	NA
AUR79172.1|3773293_3773836_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
AUR79173.1|3773832_3774399_+	damage-inducible protein CinA	NA	B5TK85	Pseudomonas_phage	40.5	3.4e-19
AUR79174.1|3774536_3775358_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
AUR79175.1|3775365_3776685_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUR79176.1|3776735_3777134_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AUR79177.1|3777222_3778113_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79178.1|3778414_3781447_+	BrkA autotransporter	NA	NA	NA	NA	NA
AUR79179.1|3781550_3783194_-	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	59.7	3.9e-169
AUR79180.1|3783226_3783514_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	52.1	1.2e-20
AUR79181.1|3783847_3784477_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79182.1|3784473_3785175_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79183.1|3785223_3785859_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79184.1|3785902_3787612_-	dehydrogenase	NA	A0A2P0ZL82	Lactobacillus_phage	27.4	2.7e-27
AUR79185.1|3787673_3788624_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79186.1|3789229_3790243_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUR79187.1|3790290_3792036_+	FAD-binding dehydrogenase	NA	A0A2P0ZL82	Lactobacillus_phage	25.1	6.5e-21
AUR79188.1|3792266_3793217_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79189.1|3793298_3793946_+	nicotinamidase	NA	NA	NA	NA	NA
AUR79190.1|3793960_3795388_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	6.5e-19
AUR79191.1|3795553_3796159_-	HD family phosphohydrolase	NA	NA	NA	NA	NA
AUR79192.1|3796446_3797397_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79193.1|3797588_3797855_-	hypothetical protein	NA	NA	NA	NA	NA
AUR79194.1|3798220_3798421_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79195.1|3798437_3798695_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79196.1|3800308_3801283_-	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
AUR79197.1|3801614_3802214_+	hypothetical protein	NA	NA	NA	NA	NA
AUR79198.1|3802201_3803632_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUR79199.1|3803641_3804592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79200.1|3804690_3805641_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUR79201.1|3805739_3806690_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
