assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002887065.1_ASM288706v1	CP025597	Mycobacterium tuberculosis strain GG-36-11 chromosome, complete genome	9	3119155-3120509	1,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|CP025597.1_3112836_3113241_+,NA|64aa|up_6|CP025597.1_3113237_3113429_+,NA|86aa|up_4|CP025597.1_3115015_3115273_+,NA|104aa|up_3|CP025597.1_3115377_3115689_+,NA|203aa|up_2|CP025597.1_3116108_3116717_+,NA	NA|92aa|up_9|CP025597.1_3111983_3112259_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|CP025597.1_3112398_3112764_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|CP025597.1_3112836_3113241_+	NA	NA|64aa|up_6|CP025597.1_3113237_3113429_+	NA	NA|385aa|up_5|CP025597.1_3113627_3114782_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP025597.1_3115015_3115273_+	NA	NA|104aa|up_3|CP025597.1_3115377_3115689_+	NA	NA|203aa|up_2|CP025597.1_3116108_3116717_+	NA	NA|470aa|up_1|CP025597.1_3116787_3118197_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP025597.1_3118193_3119006_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|CP025597.1_3120535_3121797_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|CP025597.1_3123594_3123936_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|CP025597.1_3123936_3124953_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|CP025597.1_3124965_3126114_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|CP025597.1_3126209_3127337_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|CP025597.1_3127333_3128242_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|CP025597.1_3128222_3128933_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|CP025597.1_3128942_3129317_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_8|CP025597.1_3129313_3131743_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|CP025597.1_3131739_3132684_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCA_002887065.1_ASM288706v1	CP025597	Mycobacterium tuberculosis strain GG-36-11 chromosome, complete genome	10	3121832-3123546	8,4,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|CP025597.1_3112836_3113241_+,NA|64aa|up_7|CP025597.1_3113237_3113429_+,NA|86aa|up_5|CP025597.1_3115015_3115273_+,NA|104aa|up_4|CP025597.1_3115377_3115689_+,NA|203aa|up_3|CP025597.1_3116108_3116717_+,NA	NA|122aa|up_9|CP025597.1_3112398_3112764_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|CP025597.1_3112836_3113241_+	NA	NA|64aa|up_7|CP025597.1_3113237_3113429_+	NA	NA|385aa|up_6|CP025597.1_3113627_3114782_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|CP025597.1_3115015_3115273_+	NA	NA|104aa|up_4|CP025597.1_3115377_3115689_+	NA	NA|203aa|up_3|CP025597.1_3116108_3116717_+	NA	NA|470aa|up_2|CP025597.1_3116787_3118197_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|CP025597.1_3118193_3119006_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|CP025597.1_3120535_3121797_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|CP025597.1_3123594_3123936_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP025597.1_3123936_3124953_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP025597.1_3124965_3126114_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP025597.1_3126209_3127337_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP025597.1_3127333_3128242_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP025597.1_3128222_3128933_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP025597.1_3128942_3129317_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|CP025597.1_3129313_3131743_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP025597.1_3131739_3132684_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP025597.1_3132861_3133407_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002887065.1_ASM288706v1	CP025597	Mycobacterium tuberculosis strain GG-36-11 chromosome, complete genome	11	3740642-3741183	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025597.1_3720715_3721195_+,NA|164aa|down_2|CP025597.1_3753178_3753670_-,NA|79aa|down_5|CP025597.1_3755284_3755521_-	NA|160aa|up_9|CP025597.1_3720715_3721195_+	NA	NA|147aa|up_8|CP025597.1_3721213_3721654_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025597.1_3721687_3722557_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025597.1_3722577_3723588_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025597.1_3723872_3724505_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025597.1_3724571_3725801_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025597.1_3726083_3727433_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025597.1_3727444_3728584_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025597.1_3728580_3729312_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025597.1_3729320_3736892_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025597.1_3743154_3743412_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025597.1_3743667_3753141_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025597.1_3753178_3753670_-	NA	NA|149aa|down_3|CP025597.1_3753766_3754213_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025597.1_3754249_3755068_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025597.1_3755284_3755521_-	NA	NA|3717aa|down_6|CP025597.1_3755908_3767059_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025597.1_3767302_3768097_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025597.1_3768178_3768550_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025597.1_3768447_3768858_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002887065.1_ASM288706v1	CP025597	Mycobacterium tuberculosis strain GG-36-11 chromosome, complete genome	12	4110611-4110699	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|CP025597.1_4099302_4099497_+,NA|257aa|up_7|CP025597.1_4101197_4101968_-,NA|90aa|up_2|CP025597.1_4107189_4107459_+,NA|233aa|up_0|CP025597.1_4109715_4110414_-,NA|126aa|down_6|CP025597.1_4115934_4116312_+	NA|65aa|up_9|CP025597.1_4099302_4099497_+	NA	NA|288aa|up_8|CP025597.1_4099579_4100443_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|CP025597.1_4101197_4101968_-	NA	NA|549aa|up_6|CP025597.1_4101964_4103611_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|CP025597.1_4103607_4104408_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|CP025597.1_4104463_4105390_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|CP025597.1_4105391_4107017_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|CP025597.1_4107189_4107459_+	NA	NA|652aa|up_1|CP025597.1_4107724_4109680_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP025597.1_4109715_4110414_-	NA	NA|173aa|down_0|CP025597.1_4110759_4111278_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP025597.1_4111278_4112262_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP025597.1_4112254_4113448_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP025597.1_4113453_4114275_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP025597.1_4114406_4115090_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP025597.1_4115089_4115827_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP025597.1_4115934_4116312_+	NA	NA|225aa|down_7|CP025597.1_4116410_4117085_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP025597.1_4117190_4117985_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP025597.1_4117991_4118447_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
