assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002886685.1_ASM288668v1	CP025598	Mycobacterium tuberculosis strain GG-37-11 chromosome, complete genome	1	338108-338330	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCG--CCGGTGCCGCCGGCGCC----------GAACAGCCCGCC	55	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_2|CP025598.1_333164_333347_-,NA|87aa|down_0|CP025598.1_339110_339371_+	NA|732aa|up_9|CP025598.1_326270_328466_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_8|CP025598.1_328579_329713_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_7|CP025598.1_329709_330330_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_6|CP025598.1_330426_331008_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_5|CP025598.1_330937_331663_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_4|CP025598.1_331752_332673_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_3|CP025598.1_332712_333141_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_2|CP025598.1_333164_333347_-	NA	NA|615aa|up_1|CP025598.1_333441_335286_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|255aa|up_0|CP025598.1_335293_336058_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|87aa|down_0|CP025598.1_339110_339371_+	NA	NA|537aa|down_1|CP025598.1_339367_340978_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|CP025598.1_341001_341910_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|CP025598.1_342133_344029_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|CP025598.1_344025_345642_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|CP025598.1_345638_349631_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|CP025598.1_349627_349936_+	pfam00934, PE, PE family	NA|514aa|down_7|CP025598.1_349938_351480_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|CP025598.1_351528_351822_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|CP025598.1_351851_352142_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002886685.1_ASM288668v1	CP025598	Mycobacterium tuberculosis strain GG-37-11 chromosome, complete genome	11	3119190-3120544	3,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|CP025598.1_3112871_3113276_+,NA|64aa|up_6|CP025598.1_3113272_3113464_+,NA|86aa|up_4|CP025598.1_3115050_3115308_+,NA|104aa|up_3|CP025598.1_3115412_3115724_+,NA|203aa|up_2|CP025598.1_3116143_3116752_+,NA	NA|92aa|up_9|CP025598.1_3112018_3112294_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|CP025598.1_3112433_3112799_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|CP025598.1_3112871_3113276_+	NA	NA|64aa|up_6|CP025598.1_3113272_3113464_+	NA	NA|385aa|up_5|CP025598.1_3113662_3114817_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP025598.1_3115050_3115308_+	NA	NA|104aa|up_3|CP025598.1_3115412_3115724_+	NA	NA|203aa|up_2|CP025598.1_3116143_3116752_+	NA	NA|470aa|up_1|CP025598.1_3116822_3118232_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP025598.1_3118228_3119041_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|CP025598.1_3120570_3121832_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|CP025598.1_3123634_3123976_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|CP025598.1_3123976_3124993_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|CP025598.1_3125005_3126154_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|CP025598.1_3126249_3127377_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|CP025598.1_3127373_3128282_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|CP025598.1_3128262_3128973_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|CP025598.1_3128982_3129357_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|CP025598.1_3129353_3131792_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|CP025598.1_3131788_3132733_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCA_002886685.1_ASM288668v1	CP025598	Mycobacterium tuberculosis strain GG-37-11 chromosome, complete genome	12	3121867-3123586	8,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|CP025598.1_3112871_3113276_+,NA|64aa|up_7|CP025598.1_3113272_3113464_+,NA|86aa|up_5|CP025598.1_3115050_3115308_+,NA|104aa|up_4|CP025598.1_3115412_3115724_+,NA|203aa|up_3|CP025598.1_3116143_3116752_+,NA	NA|122aa|up_9|CP025598.1_3112433_3112799_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|CP025598.1_3112871_3113276_+	NA	NA|64aa|up_7|CP025598.1_3113272_3113464_+	NA	NA|385aa|up_6|CP025598.1_3113662_3114817_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|CP025598.1_3115050_3115308_+	NA	NA|104aa|up_4|CP025598.1_3115412_3115724_+	NA	NA|203aa|up_3|CP025598.1_3116143_3116752_+	NA	NA|470aa|up_2|CP025598.1_3116822_3118232_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|CP025598.1_3118228_3119041_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|CP025598.1_3120570_3121832_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|CP025598.1_3123634_3123976_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP025598.1_3123976_3124993_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP025598.1_3125005_3126154_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP025598.1_3126249_3127377_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP025598.1_3127373_3128282_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP025598.1_3128262_3128973_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP025598.1_3128982_3129357_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|CP025598.1_3129353_3131792_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP025598.1_3131788_3132733_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP025598.1_3132910_3133456_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002886685.1_ASM288668v1	CP025598	Mycobacterium tuberculosis strain GG-37-11 chromosome, complete genome	13	3740705-3741246	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025598.1_3720778_3721258_+,NA|164aa|down_2|CP025598.1_3753232_3753724_-,NA|79aa|down_5|CP025598.1_3755338_3755575_-	NA|160aa|up_9|CP025598.1_3720778_3721258_+	NA	NA|147aa|up_8|CP025598.1_3721276_3721717_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025598.1_3721750_3722620_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025598.1_3722640_3723651_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025598.1_3723935_3724568_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025598.1_3724634_3725864_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025598.1_3726146_3727496_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025598.1_3727507_3728647_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025598.1_3728643_3729375_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025598.1_3729383_3736955_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025598.1_3743208_3743466_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025598.1_3743721_3753195_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025598.1_3753232_3753724_-	NA	NA|149aa|down_3|CP025598.1_3753820_3754267_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025598.1_3754303_3755122_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025598.1_3755338_3755575_-	NA	NA|3717aa|down_6|CP025598.1_3755962_3767113_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025598.1_3767356_3768151_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025598.1_3768232_3768604_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025598.1_3768501_3768912_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002886685.1_ASM288668v1	CP025598	Mycobacterium tuberculosis strain GG-37-11 chromosome, complete genome	14	4110667-4110755	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|CP025598.1_4099358_4099553_+,NA|257aa|up_7|CP025598.1_4101253_4102024_-,NA|90aa|up_2|CP025598.1_4107245_4107515_+,NA|233aa|up_0|CP025598.1_4109771_4110470_-,NA|126aa|down_6|CP025598.1_4115990_4116368_+	NA|65aa|up_9|CP025598.1_4099358_4099553_+	NA	NA|288aa|up_8|CP025598.1_4099635_4100499_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|CP025598.1_4101253_4102024_-	NA	NA|549aa|up_6|CP025598.1_4102020_4103667_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|CP025598.1_4103663_4104464_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|CP025598.1_4104519_4105446_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|CP025598.1_4105447_4107073_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|CP025598.1_4107245_4107515_+	NA	NA|652aa|up_1|CP025598.1_4107780_4109736_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP025598.1_4109771_4110470_-	NA	NA|173aa|down_0|CP025598.1_4110815_4111334_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP025598.1_4111334_4112318_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP025598.1_4112310_4113504_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP025598.1_4113509_4114331_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP025598.1_4114462_4115146_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP025598.1_4115145_4115883_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP025598.1_4115990_4116368_+	NA	NA|225aa|down_7|CP025598.1_4116466_4117141_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP025598.1_4117246_4118041_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP025598.1_4118047_4118503_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
