The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025608	Mycobacterium tuberculosis strain GG-229-10 chromosome, complete genome	4411519	1125411	1177212	4411519	tRNA,transposase,protease,integrase	Klosneuvirus(20.0%)	54	1133234:1133250	1182292:1182308
AUQ19894.1|1125411_1126971_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.2	2.8e-100
AUQ22686.1|1127056_1127851_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA	NA
AUQ19895.1|1128058_1129147_+	resuscitation-promoting factor RpfB	NA	Q856D9	Mycobacterium_phage	59.4	8.2e-22
AUQ19896.1|1129119_1130073_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AUQ22687.1|1130158_1131079_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
AUQ19897.1|1131095_1131389_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ22688.1|1131348_1131648_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ19898.1|1131592_1133227_+	polyketide synthase	NA	NA	NA	NA	NA
1133234:1133250	attL	CGAGCAGACGCAAAATC	NA	NA	NA	NA
AUQ19899.1|1133300_1133876_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUQ19900.1|1133888_1134536_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
AUQ19901.1|1134752_1135433_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ19902.1|1135468_1136449_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	32.7	1.8e-44
AUQ19903.1|1136540_1138028_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	NA	NA	NA	NA
AUQ22689.1|1138282_1138876_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUQ19904.1|1138934_1142639_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AUQ19905.1|1142638_1143616_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AUQ19906.1|1143703_1144435_+	murein transglycosylase B	NA	NA	NA	NA	NA
AUQ19907.1|1144531_1145821_+	enolase	NA	W6LP63	Streptococcus_phage	56.6	2.1e-133
AUQ19908.1|1145825_1146512_+	septation inhibitor protein	NA	NA	NA	NA	NA
AUQ22690.1|1146528_1146996_+	DUF501 domain-containing protein	NA	NA	NA	NA	NA
AUQ19909.1|1146986_1147946_+	exopolyphosphatase	NA	NA	NA	NA	NA
AUQ19910.1|1148185_1148398_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ19911.1|1148394_1149075_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	30.6	4.2e-24
AUQ19912.1|1149071_1151654_-	sensor protein KdpD	NA	NA	NA	NA	NA
AUQ19913.1|1151744_1151891_+	potassium transporter Trk	NA	NA	NA	NA	NA
AUQ22691.1|1151887_1151980_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUQ19914.1|1151979_1153695_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUQ19915.1|1153691_1155821_+	potassium-transporting ATPase subunit B	NA	M1HRW9	Paramecium_bursaria_Chlorella_virus	26.2	3.8e-23
AUQ19916.1|1155820_1156390_+	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUQ19917.1|1156393_1157923_-	sensor histidine kinase	NA	NA	NA	NA	NA
AUQ19918.1|1157930_1158704_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.3	2.3e-34
AUQ19919.1|1160511_1160796_-	ESAT-6-like protein EsxI	NA	NA	NA	NA	NA
AUQ19920.1|1160822_1161119_-	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
AUQ19921.1|1161264_1162440_-	PPE family protein	NA	NA	NA	NA	NA
AUQ19922.1|1162516_1163344_-	PE family protein	NA	NA	NA	NA	NA
AUQ19923.1|1163904_1164153_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ19924.1|1164131_1164371_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ19925.1|1164276_1164495_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ22692.1|1164539_1165022_-|transposase	IS5 family transposase	transposase	A0A1V0SLQ8	Klosneuvirus	28.7	8.1e-06
AUQ19926.1|1165059_1165458_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AUQ22693.1|1165749_1166775_-|protease	serine protease	protease	NA	NA	NA	NA
AUQ19927.1|1167021_1167645_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ19928.1|1167641_1168523_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ19929.1|1168604_1169393_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ19930.1|1169392_1170640_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.1	3.1e-81
AUQ19931.1|1171007_1172123_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ19932.1|1172079_1172283_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ19933.1|1172355_1172802_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUQ22694.1|1172850_1173756_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUQ19934.1|1173914_1174670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUQ22695.1|1174964_1175591_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ19935.1|1175657_1175840_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ19936.1|1176535_1176874_+|integrase	integrase	integrase	NA	NA	NA	NA
AUQ19937.1|1176897_1177212_+|integrase	integrase	integrase	Q854H9	Mycobacterium_phage	53.6	1.0e-09
1182292:1182308	attR	CGAGCAGACGCAAAATC	NA	NA	NA	NA
>prophage 2
CP025608	Mycobacterium tuberculosis strain GG-229-10 chromosome, complete genome	4411519	2941175	2976535	4411519	capsid,head,terminase,transposase,tRNA,protease,integrase	Tupanvirus(11.11%)	42	2969967:2969994	2980952:2980979
AUQ21395.1|2941175_2943254_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
AUQ21396.1|2943362_2943590_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21397.1|2943586_2944972_-	PE family protein	NA	NA	NA	NA	NA
AUQ21398.1|2945316_2945817_+	DUF1990 domain-containing protein	NA	NA	NA	NA	NA
AUQ21399.1|2945833_2946274_-	DoxX family membrane protein	NA	NA	NA	NA	NA
AUQ22889.1|2946420_2947098_+	transcriptional regulator	NA	NA	NA	NA	NA
AUQ21400.1|2947082_2947436_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AUQ21401.1|2947448_2947874_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ21402.1|2947870_2948545_-	transcriptional regulator	NA	NA	NA	NA	NA
AUQ21403.1|2948622_2949444_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUQ21404.1|2949579_2950473_+	universal stress protein	NA	NA	NA	NA	NA
AUQ22890.1|2950475_2951294_-	universal stress protein	NA	NA	NA	NA	NA
AUQ21405.1|2951308_2952490_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AUQ21406.1|2952548_2952980_-	hypoxic response protein 1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
AUQ21407.1|2953493_2954735_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUQ22891.1|2955044_2955407_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21408.1|2955753_2956878_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21409.1|2956879_2957419_+	archease	NA	NA	NA	NA	NA
AUQ21410.1|2957558_2958857_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
AUQ21411.1|2958895_2959177_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
AUQ21412.1|2959321_2959807_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
AUQ21413.1|2959833_2960091_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ21414.1|2960091_2962419_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ21415.1|2962447_2962690_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21416.1|2962690_2963368_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21417.1|2963563_2964220_+	DedA family protein	NA	NA	NA	NA	NA
AUQ21418.1|2964382_2964829_+	STAS domain-containing protein	NA	NA	NA	NA	NA
AUQ21419.1|2965003_2965336_-	YnfA family protein	NA	NA	NA	NA	NA
AUQ21420.1|2965455_2965815_-	transcriptional regulator	NA	NA	NA	NA	NA
AUQ21421.1|2965916_2966375_+	cadmium-induced protein CadI	NA	NA	NA	NA	NA
AUQ21422.1|2966510_2966891_+	transcriptional regulator	NA	NA	NA	NA	NA
AUQ21423.1|2966887_2968384_+	arsenical-resistance protein	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
AUQ22892.1|2968573_2968810_+	DUF3018 domain-containing protein	NA	NA	NA	NA	NA
AUQ21424.1|2968882_2969056_+	hypothetical protein	NA	NA	NA	NA	NA
2969967:2969994	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
AUQ21425.1|2970100_2970532_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21426.1|2970528_2971527_+|integrase	integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
AUQ21427.1|2971540_2972005_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21428.1|2971992_2972181_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ21429.1|2972137_2973398_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
AUQ21430.1|2973772_2975215_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	37.8	1.4e-64
AUQ22893.1|2975222_2975756_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
AUQ21431.1|2975908_2976535_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980952:2980979	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 3
CP025608	Mycobacterium tuberculosis strain GG-229-10 chromosome, complete genome	4411519	3710433	3796371	4411519	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
AUQ22034.1|3710433_3711694_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
AUQ22035.1|3711932_3713462_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUQ22999.1|3713394_3714333_-	RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
AUQ22036.1|3714341_3715709_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
AUQ22037.1|3715777_3716995_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
AUQ22038.1|3717090_3718599_+	MFS transporter	NA	NA	NA	NA	NA
AUQ22039.1|3718595_3719747_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
AUQ22040.1|3719937_3720783_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
AUQ23000.1|3720759_3721239_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ22041.1|3721257_3721698_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUQ22042.1|3721731_3722601_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
AUQ22043.1|3722621_3723632_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUQ22044.1|3723916_3724549_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUQ22045.1|3724615_3725845_-	isocitrate dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUQ22046.1|3726127_3727477_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
AUQ22047.1|3727488_3728628_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUQ23001.1|3728624_3729356_+	methyltransferase	NA	NA	NA	NA	NA
AUQ22048.1|3729364_3736936_-	PPE family protein	NA	NA	NA	NA	NA
AUQ22049.1|3743198_3743456_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
AUQ22050.1|3743711_3753185_-	PPE family protein	NA	NA	NA	NA	NA
AUQ23003.1|3753222_3753714_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ23002.1|3753810_3754257_+|transposase	transposase	transposase	NA	NA	NA	NA
AUQ22051.1|3754293_3755112_-|transposase	transposase	transposase	NA	NA	NA	NA
AUQ22052.1|3755328_3755565_-|transposase	transposase	transposase	NA	NA	NA	NA
AUQ22053.1|3755952_3767103_-	PPE family protein	NA	NA	NA	NA	NA
AUQ22054.1|3767346_3768141_-	oxidoreductase	NA	NA	NA	NA	NA
AUQ22055.1|3768222_3768594_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
AUQ22056.1|3768491_3768902_-	FAD-binding protein	NA	NA	NA	NA	NA
AUQ23004.1|3768736_3768997_-	oxidoreductase	NA	NA	NA	NA	NA
AUQ22057.1|3769111_3769501_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
AUQ22058.1|3769514_3769808_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
AUQ22059.1|3769804_3770650_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
AUQ22060.1|3770773_3771049_+	antitoxin	NA	NA	NA	NA	NA
AUQ22061.1|3771045_3771303_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
AUQ22062.1|3771344_3772535_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
AUQ22063.1|3772651_3773020_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ22064.1|3773016_3773568_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
AUQ22065.1|3773574_3774156_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AUQ22066.1|3774136_3774505_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
AUQ22067.1|3774482_3774875_-	dynein regulation protein LC7	NA	NA	NA	NA	NA
AUQ22068.1|3774871_3777502_-	two-component system sensor histidine kinase EnvZ	NA	NA	NA	NA	NA
AUQ22069.1|3777737_3778202_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AUQ22070.1|3778568_3780344_+	PE family protein	NA	NA	NA	NA	NA
AUQ22071.1|3780344_3780989_-	oxidoreductase	NA	NA	NA	NA	NA
AUQ22072.1|3780987_3781422_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
AUQ22073.1|3781510_3784750_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
AUQ22074.1|3784941_3786282_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
AUQ22075.1|3786323_3787499_+	trehalose-phosphatase	NA	NA	NA	NA	NA
AUQ22076.1|3787735_3788377_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUQ22077.1|3788377_3788626_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUQ22078.1|3788630_3790058_+	amidase	NA	NA	NA	NA	NA
AUQ23005.1|3790165_3790819_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUQ22079.1|3790857_3792363_-	type B diterpene cyclase	NA	NA	NA	NA	NA
AUQ22080.1|3792367_3793258_-	diterpene synthase	NA	NA	NA	NA	NA
AUQ22081.1|3793266_3794877_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUQ22082.1|3794821_3795067_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUQ22083.1|3795109_3796371_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
