The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025605	Mycobacterium tuberculosis strain GG-134-11 chromosome, complete genome	4411399	1125390	1177191	4411399	protease,integrase,tRNA,transposase	Klosneuvirus(20.0%)	54	1133213:1133229	1182271:1182287
AUQ07496.1|1125390_1126950_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.2	2.8e-100
AUQ10299.1|1127035_1127830_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA	NA
AUQ07497.1|1128037_1129126_+	resuscitation-promoting factor RpfB	NA	Q856D9	Mycobacterium_phage	59.4	8.2e-22
AUQ07498.1|1129098_1130052_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AUQ10300.1|1130137_1131058_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
AUQ07499.1|1131074_1131368_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ10301.1|1131327_1131627_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ07500.1|1131571_1133206_+	polyketide synthase	NA	NA	NA	NA	NA
1133213:1133229	attL	CGAGCAGACGCAAAATC	NA	NA	NA	NA
AUQ07501.1|1133279_1133855_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUQ07502.1|1133867_1134515_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
AUQ07503.1|1134731_1135412_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ07504.1|1135447_1136428_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	32.7	1.8e-44
AUQ07505.1|1136519_1138007_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	NA	NA	NA	NA
AUQ10302.1|1138261_1138855_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUQ07506.1|1138913_1142618_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AUQ10303.1|1142617_1143595_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AUQ07507.1|1143682_1144414_+	murein transglycosylase B	NA	NA	NA	NA	NA
AUQ07508.1|1144510_1145800_+	enolase	NA	W6LP63	Streptococcus_phage	56.6	2.1e-133
AUQ07509.1|1145804_1146491_+	septation inhibitor protein	NA	NA	NA	NA	NA
AUQ10304.1|1146507_1146975_+	DUF501 domain-containing protein	NA	NA	NA	NA	NA
AUQ07510.1|1146965_1147925_+	exopolyphosphatase	NA	NA	NA	NA	NA
AUQ07511.1|1148164_1148377_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ07512.1|1148373_1149054_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	30.6	4.2e-24
AUQ07513.1|1149050_1151633_-	sensor protein KdpD	NA	NA	NA	NA	NA
AUQ07514.1|1151723_1151870_+	potassium transporter Trk	NA	NA	NA	NA	NA
AUQ10305.1|1151866_1151959_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUQ07515.1|1151958_1153674_+	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AUQ07516.1|1153670_1155800_+	potassium-transporting ATPase subunit B	NA	M1HRW9	Paramecium_bursaria_Chlorella_virus	26.2	3.8e-23
AUQ07517.1|1155799_1156369_+	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUQ07518.1|1156372_1157902_-	sensor histidine kinase	NA	NA	NA	NA	NA
AUQ07519.1|1157909_1158683_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.3	2.3e-34
AUQ07520.1|1160490_1160775_-	ESAT-6-like protein EsxI	NA	NA	NA	NA	NA
AUQ07521.1|1160801_1161098_-	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
AUQ07522.1|1161243_1162419_-	PPE family protein	NA	NA	NA	NA	NA
AUQ07523.1|1162495_1163323_-	PE family protein	NA	NA	NA	NA	NA
AUQ07524.1|1163883_1164132_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ07525.1|1164110_1164350_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ07526.1|1164255_1164474_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ10306.1|1164518_1165001_-|transposase	IS5 family transposase	transposase	A0A1V0SLQ8	Klosneuvirus	28.7	8.1e-06
AUQ07527.1|1165038_1165437_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AUQ10307.1|1165728_1166754_-|protease	serine protease	protease	NA	NA	NA	NA
AUQ07528.1|1167000_1167624_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ07529.1|1167620_1168502_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ07530.1|1168583_1169372_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ07531.1|1169371_1170619_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.1	3.1e-81
AUQ07532.1|1170986_1172102_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ07533.1|1172058_1172262_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ07534.1|1172334_1172781_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUQ10308.1|1172829_1173735_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUQ07535.1|1173893_1174649_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUQ10309.1|1174943_1175570_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ07536.1|1175636_1175819_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ07537.1|1176514_1176853_+|integrase	integrase	integrase	NA	NA	NA	NA
AUQ07538.1|1176876_1177191_+|integrase	integrase	integrase	Q854H9	Mycobacterium_phage	53.6	1.0e-09
1182271:1182287	attR	CGAGCAGACGCAAAATC	NA	NA	NA	NA
>prophage 2
CP025605	Mycobacterium tuberculosis strain GG-134-11 chromosome, complete genome	4411399	2941134	2976500	4411399	protease,integrase,tRNA,transposase,terminase,head,capsid	Tupanvirus(11.11%)	42	2969935:2969962	2980917:2980944
AUQ09005.1|2941134_2943213_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
AUQ09006.1|2943321_2943549_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09007.1|2943545_2944931_-	PE family protein	NA	NA	NA	NA	NA
AUQ09008.1|2945275_2945776_+	DUF1990 domain-containing protein	NA	NA	NA	NA	NA
AUQ09009.1|2945792_2946233_-	DoxX family membrane protein	NA	NA	NA	NA	NA
AUQ10498.1|2946379_2947057_+	transcriptional regulator	NA	NA	NA	NA	NA
AUQ09010.1|2947041_2947395_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AUQ09011.1|2947407_2947833_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ09012.1|2947829_2948504_-	transcriptional regulator	NA	NA	NA	NA	NA
AUQ09013.1|2948581_2949403_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUQ09014.1|2949538_2950432_+	universal stress protein	NA	NA	NA	NA	NA
AUQ10499.1|2950434_2951253_-	universal stress protein	NA	NA	NA	NA	NA
AUQ09015.1|2951267_2952449_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AUQ09016.1|2952507_2952939_-	hypoxic response protein 1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
AUQ09017.1|2953452_2954694_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUQ10500.1|2955003_2955366_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09018.1|2955712_2956837_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09019.1|2956838_2957378_+	archease	NA	NA	NA	NA	NA
AUQ09020.1|2957517_2958816_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
AUQ09021.1|2958854_2959136_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
AUQ09022.1|2959280_2959766_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
AUQ09023.1|2959792_2960050_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ09024.1|2960050_2962387_-	PE family protein	NA	NA	NA	NA	NA
AUQ09025.1|2962415_2962658_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09026.1|2962658_2963336_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09027.1|2963531_2964188_+	DedA family protein	NA	NA	NA	NA	NA
AUQ09028.1|2964350_2964797_+	STAS domain-containing protein	NA	NA	NA	NA	NA
AUQ09029.1|2964971_2965304_-	YnfA family protein	NA	NA	NA	NA	NA
AUQ09030.1|2965423_2965783_-	transcriptional regulator	NA	NA	NA	NA	NA
AUQ09031.1|2965884_2966343_+	cadmium-induced protein CadI	NA	NA	NA	NA	NA
AUQ09032.1|2966478_2966859_+	transcriptional regulator	NA	NA	NA	NA	NA
AUQ09033.1|2966855_2968352_+	arsenical-resistance protein	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
AUQ10501.1|2968541_2968778_+	DUF3018 domain-containing protein	NA	NA	NA	NA	NA
AUQ09034.1|2968850_2969024_+	hypothetical protein	NA	NA	NA	NA	NA
2969935:2969962	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
AUQ09035.1|2970068_2970500_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09036.1|2970496_2971495_+|integrase	integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
AUQ09037.1|2971508_2971973_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09038.1|2971960_2972149_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09039.1|2972105_2973366_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
AUQ09040.1|2973740_2975180_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
AUQ10502.1|2975187_2975721_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
AUQ09041.1|2975873_2976500_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980917:2980944	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 3
CP025605	Mycobacterium tuberculosis strain GG-134-11 chromosome, complete genome	4411399	3710401	3796303	4411399	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
AUQ09647.1|3710401_3711662_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
AUQ09648.1|3711900_3713430_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUQ10608.1|3713362_3714301_-	RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
AUQ09649.1|3714309_3715677_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
AUQ09650.1|3715745_3716963_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
AUQ09651.1|3717058_3718567_+	MFS transporter	NA	NA	NA	NA	NA
AUQ09652.1|3718563_3719715_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
AUQ09653.1|3719905_3720751_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
AUQ10609.1|3720727_3721207_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09654.1|3721225_3721666_+	Zn(2+)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUQ09655.1|3721699_3722569_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
AUQ09656.1|3722589_3723600_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUQ09657.1|3723884_3724517_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUQ09658.1|3724583_3725813_-	isocitrate dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUQ09659.1|3726095_3727445_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
AUQ09660.1|3727456_3728596_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUQ10610.1|3728592_3729324_+	methyltransferase	NA	NA	NA	NA	NA
AUQ09661.1|3729332_3736904_-	PPE family protein	NA	NA	NA	NA	NA
AUQ09662.1|3743130_3743388_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
AUQ09663.1|3743643_3753117_-	PPE family protein	NA	NA	NA	NA	NA
AUQ10612.1|3753154_3753646_-	hypothetical protein	NA	NA	NA	NA	NA
AUQ10611.1|3753742_3754189_+|transposase	transposase	transposase	NA	NA	NA	NA
AUQ09664.1|3754225_3755044_-|transposase	transposase	transposase	NA	NA	NA	NA
AUQ09665.1|3755260_3755497_-|transposase	transposase	transposase	NA	NA	NA	NA
AUQ09666.1|3755884_3767035_-	PPE family protein	NA	NA	NA	NA	NA
AUQ09667.1|3767278_3768073_-	oxidoreductase	NA	NA	NA	NA	NA
AUQ09668.1|3768154_3768526_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
AUQ09669.1|3768423_3768834_-	FAD-binding protein	NA	NA	NA	NA	NA
AUQ10613.1|3768668_3768929_-	oxidoreductase	NA	NA	NA	NA	NA
AUQ09670.1|3769043_3769433_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
AUQ09671.1|3769446_3769740_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
AUQ09672.1|3769736_3770582_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
AUQ09673.1|3770705_3770981_+	antitoxin	NA	NA	NA	NA	NA
AUQ09674.1|3770977_3771235_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
AUQ09675.1|3771276_3772467_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
AUQ09676.1|3772583_3772952_+	hypothetical protein	NA	NA	NA	NA	NA
AUQ09677.1|3772948_3773500_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
AUQ09678.1|3773506_3774088_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AUQ09679.1|3774068_3774437_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
AUQ09680.1|3774414_3774807_-	dynein regulation protein LC7	NA	NA	NA	NA	NA
AUQ09681.1|3774803_3777434_-	two-component system sensor histidine kinase EnvZ	NA	NA	NA	NA	NA
AUQ09682.1|3777669_3778134_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AUQ09683.1|3778500_3780276_+	PE family protein	NA	NA	NA	NA	NA
AUQ09684.1|3780276_3780921_-	oxidoreductase	NA	NA	NA	NA	NA
AUQ09685.1|3780919_3781354_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
AUQ09686.1|3781442_3784682_-	DNA polymerase III subunit alpha	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
AUQ09687.1|3784873_3786214_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
AUQ09688.1|3786255_3787431_+	trehalose-phosphatase	NA	NA	NA	NA	NA
AUQ09689.1|3787667_3788309_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUQ09690.1|3788309_3788558_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUQ09691.1|3788562_3789990_+	amidase	NA	NA	NA	NA	NA
AUQ10614.1|3790097_3790751_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUQ09692.1|3790789_3792295_-	type B diterpene cyclase	NA	NA	NA	NA	NA
AUQ09693.1|3792299_3793190_-	diterpene synthase	NA	NA	NA	NA	NA
AUQ09694.1|3793198_3794809_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUQ09695.1|3794753_3794999_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUQ09696.1|3795041_3796303_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
