assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	9	2087959-2088185	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCGTCGCCGCCGTCGCCGATCAAC	27	0	0	NA	NA	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|CP025604.1_2084464_2084665_+,NA|88aa|up_0|CP025604.1_2087554_2087818_-,NA	NA|165aa|up_9|CP025604.1_2073844_2074339_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|CP025604.1_2074745_2075423_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|CP025604.1_2075781_2078607_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|CP025604.1_2078833_2079694_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|CP025604.1_2079734_2080601_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_4|CP025604.1_2082508_2084542_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|67aa|up_3|CP025604.1_2084464_2084665_+	NA	NA|742aa|up_2|CP025604.1_2084661_2086887_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|CP025604.1_2087162_2087558_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|CP025604.1_2087554_2087818_-	NA	NA|346aa|down_0|CP025604.1_2089587_2090625_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|CP025604.1_2090624_2091992_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|CP025604.1_2092165_2093602_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|CP025604.1_2093637_2095089_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|CP025604.1_2095118_2096069_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|CP025604.1_2096083_2096500_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|CP025604.1_2096777_2097200_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|CP025604.1_2097248_2097551_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|CP025604.1_2097547_2097862_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|CP025604.1_2097861_2099595_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	10	2088196-2088779	3,7	CRT,CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC,CCACCGTCGCCGCCGTCGCCGATCAAC	21,27	2	3	2088277-2088294|2088277-2088294|2088367-2088384	CP025604.1_400977-400960|CP025604.1_607313-607296|CP025604.1_3450093-3450076	NA:NA	5,6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|CP025604.1_2084464_2084665_+,NA|88aa|up_0|CP025604.1_2087554_2087818_-,NA	NA|165aa|up_9|CP025604.1_2073844_2074339_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|CP025604.1_2074745_2075423_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|CP025604.1_2075781_2078607_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|CP025604.1_2078833_2079694_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|CP025604.1_2079734_2080601_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_4|CP025604.1_2082508_2084542_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|67aa|up_3|CP025604.1_2084464_2084665_+	NA	NA|742aa|up_2|CP025604.1_2084661_2086887_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|CP025604.1_2087162_2087558_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|CP025604.1_2087554_2087818_-	NA	NA|346aa|down_0|CP025604.1_2089587_2090625_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|CP025604.1_2090624_2091992_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|CP025604.1_2092165_2093602_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|CP025604.1_2093637_2095089_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|CP025604.1_2095118_2096069_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|CP025604.1_2096083_2096500_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|CP025604.1_2096777_2097200_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|CP025604.1_2097248_2097551_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|CP025604.1_2097547_2097862_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|CP025604.1_2097861_2099595_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	11	2088851-2089090	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCGTCGCCGCCGTCGCCGATCAAC	27	0	0	NA	NA	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|CP025604.1_2084464_2084665_+,NA|88aa|up_0|CP025604.1_2087554_2087818_-,NA	NA|165aa|up_9|CP025604.1_2073844_2074339_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|CP025604.1_2074745_2075423_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|CP025604.1_2075781_2078607_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|CP025604.1_2078833_2079694_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|CP025604.1_2079734_2080601_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_4|CP025604.1_2082508_2084542_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|67aa|up_3|CP025604.1_2084464_2084665_+	NA	NA|742aa|up_2|CP025604.1_2084661_2086887_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|CP025604.1_2087162_2087558_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|CP025604.1_2087554_2087818_-	NA	NA|346aa|down_0|CP025604.1_2089587_2090625_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|CP025604.1_2090624_2091992_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|CP025604.1_2092165_2093602_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|CP025604.1_2093637_2095089_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|CP025604.1_2095118_2096069_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|CP025604.1_2096083_2096500_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|CP025604.1_2096777_2097200_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|CP025604.1_2097248_2097551_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|CP025604.1_2097547_2097862_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|CP025604.1_2097861_2099595_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	13	3119080-3120434	2,10,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-B,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|CP025604.1_3112761_3113166_+,NA|64aa|up_6|CP025604.1_3113162_3113354_+,NA|86aa|up_4|CP025604.1_3114940_3115198_+,NA|104aa|up_3|CP025604.1_3115302_3115614_+,NA|203aa|up_2|CP025604.1_3116033_3116642_+,NA	NA|92aa|up_9|CP025604.1_3111908_3112184_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|CP025604.1_3112323_3112689_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|CP025604.1_3112761_3113166_+	NA	NA|64aa|up_6|CP025604.1_3113162_3113354_+	NA	NA|385aa|up_5|CP025604.1_3113552_3114707_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP025604.1_3114940_3115198_+	NA	NA|104aa|up_3|CP025604.1_3115302_3115614_+	NA	NA|203aa|up_2|CP025604.1_3116033_3116642_+	NA	NA|470aa|up_1|CP025604.1_3116712_3118122_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP025604.1_3118118_3118931_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|CP025604.1_3120460_3121722_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|CP025604.1_3123521_3123863_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|CP025604.1_3123863_3124880_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|CP025604.1_3124892_3126041_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|CP025604.1_3126136_3127264_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|CP025604.1_3127260_3128169_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|CP025604.1_3128149_3128860_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|CP025604.1_3128869_3129244_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|CP025604.1_3129240_3131679_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|CP025604.1_3131675_3132620_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	14	3121757-3123473	11,5,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-B,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGA,AAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,32,38	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	23,23,21,21	23	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|CP025604.1_3112761_3113166_+,NA|64aa|up_7|CP025604.1_3113162_3113354_+,NA|86aa|up_5|CP025604.1_3114940_3115198_+,NA|104aa|up_4|CP025604.1_3115302_3115614_+,NA|203aa|up_3|CP025604.1_3116033_3116642_+,NA	NA|122aa|up_9|CP025604.1_3112323_3112689_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|CP025604.1_3112761_3113166_+	NA	NA|64aa|up_7|CP025604.1_3113162_3113354_+	NA	NA|385aa|up_6|CP025604.1_3113552_3114707_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|CP025604.1_3114940_3115198_+	NA	NA|104aa|up_4|CP025604.1_3115302_3115614_+	NA	NA|203aa|up_3|CP025604.1_3116033_3116642_+	NA	NA|470aa|up_2|CP025604.1_3116712_3118122_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|CP025604.1_3118118_3118931_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|CP025604.1_3120460_3121722_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|CP025604.1_3123521_3123863_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP025604.1_3123863_3124880_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP025604.1_3124892_3126041_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP025604.1_3126136_3127264_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP025604.1_3127260_3128169_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP025604.1_3128149_3128860_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP025604.1_3128869_3129244_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|CP025604.1_3129240_3131679_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP025604.1_3131675_3132620_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP025604.1_3132797_3133343_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	15	3737769-3740448	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NGCCGCCGTTGCCGCCGN	18	2	9	3738012-3738029|3738012-3738029|3738012-3738029|3738012-3738029|3739351-3739368|3739351-3739368|3739351-3739368|3739351-3739368|3739351-3739368	CP025604.1_336836-336853|CP025604.1_1863746-1863763|CP025604.1_2356677-2356694|CP025604.1_3055036-3055019|CP025604.1_4374665-4374682|CP025604.1_567214-567231|CP025604.1_2653616-2653633|CP025604.1_2922610-2922593|CP025604.1_4259341-4259324	NA	39	39	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025604.1_3720647_3721127_+,NA|164aa|down_2|CP025604.1_3753128_3753620_-,NA|79aa|down_5|CP025604.1_3755234_3755471_-	NA|160aa|up_9|CP025604.1_3720647_3721127_+	NA	NA|147aa|up_8|CP025604.1_3721145_3721586_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025604.1_3721619_3722489_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025604.1_3722509_3723520_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025604.1_3723804_3724437_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025604.1_3724503_3725733_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025604.1_3726015_3727365_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025604.1_3727376_3728516_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025604.1_3728512_3729244_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025604.1_3729252_3736824_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025604.1_3743104_3743362_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025604.1_3743617_3753091_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025604.1_3753128_3753620_-	NA	NA|149aa|down_3|CP025604.1_3753716_3754163_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025604.1_3754199_3755018_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025604.1_3755234_3755471_-	NA	NA|3717aa|down_6|CP025604.1_3755858_3767009_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025604.1_3767252_3768047_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025604.1_3768128_3768500_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025604.1_3768397_3768808_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	16	3740592-3741361	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025604.1_3720647_3721127_+,NA|164aa|down_2|CP025604.1_3753128_3753620_-,NA|79aa|down_5|CP025604.1_3755234_3755471_-	NA|160aa|up_9|CP025604.1_3720647_3721127_+	NA	NA|147aa|up_8|CP025604.1_3721145_3721586_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025604.1_3721619_3722489_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025604.1_3722509_3723520_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025604.1_3723804_3724437_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025604.1_3724503_3725733_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025604.1_3726015_3727365_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025604.1_3727376_3728516_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025604.1_3728512_3729244_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025604.1_3729252_3736824_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025604.1_3743104_3743362_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025604.1_3743617_3753091_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025604.1_3753128_3753620_-	NA	NA|149aa|down_3|CP025604.1_3753716_3754163_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025604.1_3754199_3755018_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025604.1_3755234_3755471_-	NA	NA|3717aa|down_6|CP025604.1_3755858_3767009_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025604.1_3767252_3768047_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025604.1_3768128_3768500_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025604.1_3768397_3768808_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002886405.1_ASM288640v1	CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	18	4110564-4110652	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|CP025604.1_4099255_4099450_+,NA|257aa|up_7|CP025604.1_4101150_4101921_-,NA|90aa|up_2|CP025604.1_4107142_4107412_+,NA|233aa|up_0|CP025604.1_4109668_4110367_-,NA|126aa|down_6|CP025604.1_4115887_4116265_+	NA|65aa|up_9|CP025604.1_4099255_4099450_+	NA	NA|288aa|up_8|CP025604.1_4099532_4100396_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|CP025604.1_4101150_4101921_-	NA	NA|549aa|up_6|CP025604.1_4101917_4103564_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|CP025604.1_4103560_4104361_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|CP025604.1_4104416_4105343_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|CP025604.1_4105344_4106970_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|CP025604.1_4107142_4107412_+	NA	NA|652aa|up_1|CP025604.1_4107677_4109633_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP025604.1_4109668_4110367_-	NA	NA|173aa|down_0|CP025604.1_4110712_4111231_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP025604.1_4111231_4112215_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP025604.1_4112207_4113401_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP025604.1_4113406_4114228_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP025604.1_4114359_4115043_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP025604.1_4115042_4115780_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP025604.1_4115887_4116265_+	NA	NA|225aa|down_7|CP025604.1_4116363_4117038_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP025604.1_4117141_4117936_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP025604.1_4117942_4118398_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
