assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002886335.1_ASM288633v1	CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	8	1572178-1573249	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|74aa|up_8|CP025601.1_1563478_1563700_-,NA|106aa|up_7|CP025601.1_1563941_1564259_+,NA	NA|540aa|up_9|CP025601.1_1561761_1563381_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|74aa|up_8|CP025601.1_1563478_1563700_-	NA	NA|106aa|up_7|CP025601.1_1563941_1564259_+	NA	NA|209aa|up_6|CP025601.1_1564393_1565020_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|CP025601.1_1565085_1565418_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|CP025601.1_1565433_1566690_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|CP025601.1_1566817_1568029_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|CP025601.1_1568101_1569580_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|CP025601.1_1569576_1570962_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|CP025601.1_1571039_1572074_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|CP025601.1_1574103_1574505_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|CP025601.1_1574501_1574759_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|CP025601.1_1574841_1575801_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|CP025601.1_1575825_1576788_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|CP025601.1_1576921_1577524_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|CP025601.1_1577604_1579572_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|CP025601.1_1579589_1580414_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|CP025601.1_1580582_1581065_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|CP025601.1_1581136_1581961_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|CP025601.1_1582157_1583096_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCA_002886335.1_ASM288633v1	CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	12	3119217-3120571	1,8,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|CP025601.1_3112898_3113303_+,NA|64aa|up_6|CP025601.1_3113299_3113491_+,NA|86aa|up_4|CP025601.1_3115077_3115335_+,NA|104aa|up_3|CP025601.1_3115439_3115751_+,NA|203aa|up_2|CP025601.1_3116170_3116779_+,NA	NA|92aa|up_9|CP025601.1_3112045_3112321_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|CP025601.1_3112460_3112826_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|CP025601.1_3112898_3113303_+	NA	NA|64aa|up_6|CP025601.1_3113299_3113491_+	NA	NA|385aa|up_5|CP025601.1_3113689_3114844_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP025601.1_3115077_3115335_+	NA	NA|104aa|up_3|CP025601.1_3115439_3115751_+	NA	NA|203aa|up_2|CP025601.1_3116170_3116779_+	NA	NA|470aa|up_1|CP025601.1_3116849_3118259_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP025601.1_3118255_3119068_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|CP025601.1_3120597_3121859_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|CP025601.1_3123656_3123998_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|CP025601.1_3123998_3125015_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|CP025601.1_3125027_3126176_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|CP025601.1_3126271_3127399_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|CP025601.1_3127395_3128304_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|CP025601.1_3128284_3128995_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|CP025601.1_3129004_3129379_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|816aa|down_8|CP025601.1_3129375_3131823_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|CP025601.1_3131819_3132764_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCA_002886335.1_ASM288633v1	CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	13	3121894-3123608	9,6,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|CP025601.1_3112898_3113303_+,NA|64aa|up_7|CP025601.1_3113299_3113491_+,NA|86aa|up_5|CP025601.1_3115077_3115335_+,NA|104aa|up_4|CP025601.1_3115439_3115751_+,NA|203aa|up_3|CP025601.1_3116170_3116779_+,NA	NA|122aa|up_9|CP025601.1_3112460_3112826_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|CP025601.1_3112898_3113303_+	NA	NA|64aa|up_7|CP025601.1_3113299_3113491_+	NA	NA|385aa|up_6|CP025601.1_3113689_3114844_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|CP025601.1_3115077_3115335_+	NA	NA|104aa|up_4|CP025601.1_3115439_3115751_+	NA	NA|203aa|up_3|CP025601.1_3116170_3116779_+	NA	NA|470aa|up_2|CP025601.1_3116849_3118259_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|CP025601.1_3118255_3119068_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|CP025601.1_3120597_3121859_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|CP025601.1_3123656_3123998_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP025601.1_3123998_3125015_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP025601.1_3125027_3126176_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP025601.1_3126271_3127399_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP025601.1_3127395_3128304_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP025601.1_3128284_3128995_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP025601.1_3129004_3129379_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|816aa|down_7|CP025601.1_3129375_3131823_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP025601.1_3131819_3132764_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP025601.1_3132941_3133487_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002886335.1_ASM288633v1	CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	14	3740728-3741497	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025601.1_3720801_3721281_+,NA|164aa|down_2|CP025601.1_3753264_3753756_-,NA|79aa|down_5|CP025601.1_3755370_3755607_-	NA|160aa|up_9|CP025601.1_3720801_3721281_+	NA	NA|147aa|up_8|CP025601.1_3721299_3721740_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025601.1_3721773_3722643_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025601.1_3722663_3723674_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025601.1_3723958_3724591_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025601.1_3724657_3725887_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025601.1_3726169_3727519_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025601.1_3727530_3728670_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025601.1_3728666_3729398_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025601.1_3729406_3736978_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025601.1_3743240_3743498_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025601.1_3743753_3753227_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025601.1_3753264_3753756_-	NA	NA|149aa|down_3|CP025601.1_3753852_3754299_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025601.1_3754335_3755154_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025601.1_3755370_3755607_-	NA	NA|3717aa|down_6|CP025601.1_3755994_3767145_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025601.1_3767388_3768183_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025601.1_3768264_3768636_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025601.1_3768533_3768944_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002886335.1_ASM288633v1	CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	16	4110734-4110822	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|CP025601.1_4099425_4099620_+,NA|257aa|up_7|CP025601.1_4101320_4102091_-,NA|90aa|up_2|CP025601.1_4107312_4107582_+,NA|233aa|up_0|CP025601.1_4109838_4110537_-,NA|126aa|down_6|CP025601.1_4116057_4116435_+	NA|65aa|up_9|CP025601.1_4099425_4099620_+	NA	NA|288aa|up_8|CP025601.1_4099702_4100566_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|CP025601.1_4101320_4102091_-	NA	NA|549aa|up_6|CP025601.1_4102087_4103734_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|CP025601.1_4103730_4104531_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|CP025601.1_4104586_4105513_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|CP025601.1_4105514_4107140_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|CP025601.1_4107312_4107582_+	NA	NA|652aa|up_1|CP025601.1_4107847_4109803_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP025601.1_4109838_4110537_-	NA	NA|173aa|down_0|CP025601.1_4110882_4111401_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP025601.1_4111401_4112385_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP025601.1_4112377_4113571_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP025601.1_4113576_4114398_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP025601.1_4114529_4115213_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP025601.1_4115212_4115950_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP025601.1_4116057_4116435_+	NA	NA|225aa|down_7|CP025601.1_4116533_4117208_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP025601.1_4117313_4118108_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP025601.1_4118114_4118570_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
